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Items: 1 to 50 of 54

1.

Corrigendum to: A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland.

Alon S, Eisenberg E, Jacob-Hirsch J, Rechavi G, Vatine G, Toyama R, Coon SL, Klein DC, Gothilf Y.

Bioinformatics. 2019 Oct 15;35(20):4206. doi: 10.1093/bioinformatics/btz410. No abstract available.

2.

New splicing variants of mitochondrial Rho GTPase-1 (Miro1) transport peroxisomes.

Okumoto K, Ono T, Toyama R, Shimomura A, Nagata A, Fujiki Y.

J Cell Biol. 2018 Feb 5;217(2):619-633. doi: 10.1083/jcb.201708122. Epub 2017 Dec 8.

3.

Synthesis and Physicochemical Properties of Piceno[4,3-b:9,10-b']dithiophene Derivatives and Their Application in Organic Field-Effect Transistors.

Hyodo K, Toyama R, Mori H, Nishihara Y.

ACS Omega. 2017 Jan 30;2(1):308-315. doi: 10.1021/acsomega.7b00015. eCollection 2017 Jan 31.

4.

Mild reduction of plasmalogens causes rhizomelic chondrodysplasia punctata: functional characterization of a novel mutation.

Noguchi M, Honsho M, Abe Y, Toyama R, Niwa H, Sato Y, Ghaedi K, Rahmanifar A, Shafeghati Y, Fujiki Y.

J Hum Genet. 2014 Jul;59(7):387-92. doi: 10.1038/jhg.2014.39. Epub 2014 May 22. Erratum in: J Hum Genet. 2014 Jul;59(7):417.

PMID:
24849933
5.

Dose-dependent sickness behavior, abortion and inflammation induced by systemic LPS injection in pregnant mice.

Toyama RP, Xikota JC, Schwarzbold ML, Frode TS, Buss Zda S, Nunes JC, Funchal GD, Nunes FC, Walz R, Pires MM.

J Matern Fetal Neonatal Med. 2015 Mar;28(4):426-30. doi: 10.3109/14767058.2014.918600. Epub 2014 May 27.

PMID:
24824102
6.

Habenular commissure formation in zebrafish is regulated by the pineal gland-specific gene unc119c.

Toyama R, Kim MH, Rebbert ML, Gonzales J, Burgess H, Dawid IB.

Dev Dyn. 2013 Sep;242(9):1033-42. doi: 10.1002/dvdy.23994. Epub 2013 Jun 27.

7.

Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork.

Tovin A, Alon S, Ben-Moshe Z, Mracek P, Vatine G, Foulkes NS, Jacob-Hirsch J, Rechavi G, Toyama R, Coon SL, Klein DC, Eisenberg E, Gothilf Y.

PLoS Genet. 2012;8(12):e1003116. doi: 10.1371/journal.pgen.1003116. Epub 2012 Dec 20.

8.

Acute regeneration and chronic acellular transformation of rabbit cryopreserved aortic allografts.

Yamada A, Takahashi R, Toyama R, Okita Y.

Acta Histochem Cytochem. 2012 Jun 28;45(3):177-86. doi: 10.1267/ahc.11060. Epub 2012 May 15.

9.

All-fiber Q-switched operation of thulium-doped silica fiber laser by piezoelectric microbending.

Sakata H, Araki S, Toyama R, Tomiki M.

Appl Opt. 2012 Mar 10;51(8):1067-70. doi: 10.1364/AO.51.001067.

PMID:
22410984
10.

Influence of matrix and insertion technique on the microleakage and microhardness of posterior composite restorations.

Borges AB, Torres CR, Cassiano KV, Toyama RV, Pucci CR.

Gen Dent. 2009 Mar-Apr;57(2):163-70.

PMID:
19552367
11.

Transcriptome analysis of the zebrafish pineal gland.

Toyama R, Chen X, Jhawar N, Aamar E, Epstein J, Reany N, Alon S, Gothilf Y, Klein DC, Dawid IB.

Dev Dyn. 2009 Jul;238(7):1813-26. doi: 10.1002/dvdy.21988.

12.

A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland.

Alon S, Eisenberg E, Jacob-Hirsch J, Rechavi G, Vatine G, Toyama R, Coon SL, Klein DC, Gothilf Y.

Bioinformatics. 2009 Mar 1;25(5):559-62. doi: 10.1093/bioinformatics/btp031. Epub 2009 Jan 15. Erratum in: Bioinformatics. 2019 Oct 15;35(20):4206.

13.

Brd4 associates with mitotic chromosomes throughout early zebrafish embryogenesis.

Toyama R, Rebbert ML, Dey A, Ozato K, Dawid IB.

Dev Dyn. 2008 Jun;237(6):1636-44. doi: 10.1002/dvdy.21576.

14.

Perturbation of rRNA synthesis in the bap28 mutation leads to apoptosis mediated by p53 in the zebrafish central nervous system.

Azuma M, Toyama R, Laver E, Dawid IB.

J Biol Chem. 2006 May 12;281(19):13309-16. Epub 2006 Mar 10.

15.

Impaired regulation of gonadotropins leads to the atrophy of the female reproductive system in klotho-deficient mice.

Toyama R, Fujimori T, Nabeshima Y, Itoh Y, Tsuji Y, Osamura RY, Nabeshima Y.

Endocrinology. 2006 Jan;147(1):120-9. Epub 2005 Sep 22.

PMID:
16179415
16.

Functional development of the zebrafish pineal gland: light-induced expression of period2 is required for onset of the circadian clock.

Ziv L, Levkovitz S, Toyama R, Falcon J, Gothilf Y.

J Neuroendocrinol. 2005 May;17(5):314-20.

PMID:
15869567
17.

Sequence relationships and expression patterns of zebrafish zic2 and zic5 genes.

Toyama R, Gomez DM, Mana MD, Dawid IB.

Gene Expr Patterns. 2004 May;4(3):345-50.

PMID:
15053986
18.

Zebrafish serotonin-N-acetyltransferase-2 gene regulation: pineal-restrictive downstream module contains a functional E-box and three photoreceptor conserved elements.

Appelbaum L, Toyama R, Dawid IB, Klein DC, Baler R, Gothilf Y.

Mol Endocrinol. 2004 May;18(5):1210-21. Epub 2004 Feb 26.

PMID:
14988431
19.

Regulation of the Lim-1 gene is mediated through conserved FAST-1/FoxH1 sites in the first intron.

Watanabe M, Rebbert ML, Andreazzoli M, Takahashi N, Toyama R, Zimmerman S, Whitman M, Dawid IB.

Dev Dyn. 2002 Dec;225(4):448-56.

20.
21.

A gene expression screen in zebrafish embryogenesis.

Kudoh T, Tsang M, Hukriede NA, Chen X, Dedekian M, Clarke CJ, Kiang A, Schultz S, Epstein JA, Toyama R, Dawid IB.

Genome Res. 2001 Dec;11(12):1979-87.

22.

The IA-2 gene family: homologs in Caenorhabditis elegans, Drosophila and zebrafish.

Cai T, Krause MW, Odenwald WF, Toyama R, Notkins AL.

Diabetologia. 2001 Jan;44(1):81-8.

PMID:
11206415
23.

Zebrafish serotonin N-acetyltransferase-2: marker for development of pineal photoreceptors and circadian clock function.

Gothilf Y, Coon SL, Toyama R, Chitnis A, Namboodiri MA, Klein DC.

Endocrinology. 1999 Oct;140(10):4895-903.

PMID:
10499549
24.

Gastrulation in zebrafish: what mutants teach us.

Kodjabachian L, Dawid IB, Toyama R.

Dev Biol. 1999 Sep 15;213(2):231-45. Review.

25.

Isolation, characterization and mutation analysis of PEX13-defective Chinese hamster ovary cell mutants.

Toyama R, Mukai S, Itagaki A, Tamura S, Shimozawa N, Suzuki Y, Kondo N, Wanders RJ, Fujiki Y.

Hum Mol Genet. 1999 Sep;8(9):1673-81.

PMID:
10441330
26.

Nonsense and temperature-sensitive mutations in PEX13 are the cause of complementation group H of peroxisome biogenesis disorders.

Shimozawa N, Suzuki Y, Zhang Z, Imamura A, Toyama R, Mukai S, Fujiki Y, Tsukamoto T, Osumi T, Orii T, Wanders RJ, Kondo N.

Hum Mol Genet. 1999 Jun;8(6):1077-83.

PMID:
10332040
27.

Newly identified Chinese hamster ovary cell mutants defective in peroxisome assembly represent complementation group A of human peroxisome biogenesis disorders and one novel group in mammals.

Ghaedi K, Itagaki A, Toyama R, Tamura S, Matsumura T, Kawai A, Shimozawa N, Suzuki Y, Kondo N, Fujiki Y.

Exp Cell Res. 1999 May 1;248(2):482-8.

PMID:
10222139
28.

cyclops encodes a nodal-related factor involved in midline signaling.

Rebagliati MR, Toyama R, Haffter P, Dawid IB.

Proc Natl Acad Sci U S A. 1998 Aug 18;95(17):9932-7.

29.

Zebrafish nodal-related genes are implicated in axial patterning and establishing left-right asymmetry.

Rebagliati MR, Toyama R, Fricke C, Haffter P, Dawid IB.

Dev Biol. 1998 Jul 15;199(2):261-72.

30.

Overexpression of the forebrain-specific homeobox gene six3 induces rostral forebrain enlargement in zebrafish.

Kobayashi M, Toyama R, Takeda H, Dawid IB, Kawakami K.

Development. 1998 Aug;125(15):2973-82.

31.

Expression of LIM-domain binding protein (ldb) genes during zebrafish embryogenesis.

Toyama R, Kobayashi M, Tomita T, Dawid IB.

Mech Dev. 1998 Feb;71(1-2):197-200.

32.

LIM domains: multiple roles as adapters and functional modifiers in protein interactions.

Dawid IB, Breen JJ, Toyama R.

Trends Genet. 1998 Apr;14(4):156-62. Review.

PMID:
9594664
33.

Human PEX1 cloned by functional complementation on a CHO cell mutant is responsible for peroxisome-deficient Zellweger syndrome of complementation group I.

Tamura S, Okumoto K, Toyama R, Shimozawa N, Tsukamoto T, Suzuki Y, Osumi T, Kondo N, Fujiki Y.

Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4350-5.

34.
35.

Retinoid X receptor (RXR) within the RXR-retinoic acid receptor heterodimer binds its ligand and enhances retinoid-dependent gene expression.

Minucci S, Leid M, Toyama R, Saint-Jeannet JP, Peterson VJ, Horn V, Ishmael JE, Bhattacharyya N, Dey A, Dawid IB, Ozato K.

Mol Cell Biol. 1997 Feb;17(2):644-55.

36.

Oncocytic hepatocellular carcinoma with numerous globular hyaline bodies.

Fukunaga N, Fujioka A, Tanaka K, Toyama R.

Pathol Int. 1996 Apr;46(4):286-91.

PMID:
8726853
37.

Retinoid X receptor-selective ligands produce malformations in Xenopus embryos.

Minucci S, Saint-Jeannet JP, Toyama R, Scita G, DeLuca LM, Tiara M, Levin AA, Ozato K, Dawid IB.

Proc Natl Acad Sci U S A. 1996 Mar 5;93(5):1803-7.

38.

The LIM class homeobox gene lim5: implied role in CNS patterning in Xenopus and zebrafish.

Toyama R, Curtiss PE, Otani H, Kimura M, Dawid IB, Taira M.

Dev Biol. 1995 Aug;170(2):583-93.

39.

LIM domain proteins.

Dawid IB, Toyama R, Taira M.

C R Acad Sci III. 1995 Mar;318(3):295-306. Review.

PMID:
7788499
40.

Nodal induces ectopic goosecoid and lim1 expression and axis duplication in zebrafish.

Toyama R, O'Connell ML, Wright CV, Kuehn MR, Dawid IB.

Development. 1995 Feb;121(2):383-91.

41.

Fungal metabolites. Part 12. Potent immunosuppressant, 14-deoxomyriocin, (2S,3R,4R)-(E)-2-amino-3,4-dihydroxy-2-hydroxymethyleicos-6-enoic acid and structure-activity relationships of myriocin derivatives.

Fujita T, Inoue K, Yamamoto S, Ikumoto T, Sasaki S, Toyama R, Yoneta M, Chiba K, Hoshino Y, Okumoto T.

J Antibiot (Tokyo). 1994 Feb;47(2):216-24.

42.

Fungal metabolites. Part 11. A potent immunosuppressive activity found in Isaria sinclairii metabolite.

Fujita T, Inoue K, Yamamoto S, Ikumoto T, Sasaki S, Toyama R, Chiba K, Hoshino Y, Okumoto T.

J Antibiot (Tokyo). 1994 Feb;47(2):208-15.

43.

Expression patterns of the murine LIM class homeobox gene lim1 in the developing brain and excretory system.

Fujii T, Pichel JG, Taira M, Toyama R, Dawid IB, Westphal H.

Dev Dyn. 1994 Jan;199(1):73-83.

44.

E2F site activates transcription in fission yeast Schizosaccharomyces pombe and binds to a 30-kDa transcription factor.

Malhotra P, Manohar CF, Swaminathan S, Toyama R, Dhar R, Reichel R, Thimmapaya B.

J Biol Chem. 1993 Sep 25;268(27):20392-401.

46.
47.

A genomic sequence of the Schizosaccharomyces pombe 16 kDa vacuolar H(+)-ATPase.

Toyama R, Goldstein DJ, Schlegel R, Dhar R.

Yeast. 1991 Dec;7(9):989-91.

PMID:
1839480
48.

[Physiologically active compounds in the extracts from tochukaso and cultured mycelia of Cordyceps and Isaria].

Ikumoto T, Sasaki S, Namba H, Toyama R, Moritoki H, Mouri T.

Yakugaku Zasshi. 1991 Sep;111(9):504-9. Japanese.

PMID:
1762052
49.

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