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Items: 24

1.

Sample tracking in microbiome community profiling assays using synthetic 16S rRNA gene spike-in controls.

Tourlousse DM, Ohashi A, Sekiguchi Y.

Sci Rep. 2018 Jun 14;8(1):9095. doi: 10.1038/s41598-018-27314-3.

2.

Draft Genome Sequence of Terrimicrobium sacchariphilum NM-5T, a Facultative Anaerobic Soil Bacterium of the Class Spartobacteria.

Qiu YL, Tourlousse DM, Matsuura N, Ohashi A, Sekiguchi Y.

Genome Announc. 2017 Jul 27;5(30). pii: e00666-17. doi: 10.1128/genomeA.00666-17.

3.

Draft Genome Sequence of Paludibacter jiangxiensis NM7T, a Propionate-Producing Fermentative Bacterium.

Qiu YL, Tourlousse DM, Matsuura N, Ohashi A, Sekiguchi Y.

Genome Announc. 2017 Jul 20;5(29). pii: e00667-17. doi: 10.1128/genomeA.00667-17.

4.

Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner.

Srinivasan V, Stedtfeld RD, Tourlousse DM, Baushke SW, Xin Y, Miller SM, Pham T, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.

J Microbiol Methods. 2017 Aug;139:15-21. doi: 10.1016/j.mimet.2017.04.009. Epub 2017 Apr 23.

5.

Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing.

Tourlousse DM, Yoshiike S, Ohashi A, Matsukura S, Noda N, Sekiguchi Y.

Nucleic Acids Res. 2017 Feb 28;45(4):e23. doi: 10.1093/nar/gkw984.

6.

Lentimicrobium saccharophilum gen. nov., sp. nov., a strictly anaerobic bacterium representing a new family in the phylum Bacteroidetes, and proposal of Lentimicrobiaceae fam. nov.

Sun L, Toyonaga M, Ohashi A, Tourlousse DM, Matsuura N, Meng XY, Tamaki H, Hanada S, Cruz R, Yamaguchi T, Sekiguchi Y.

Int J Syst Evol Microbiol. 2016 Jul;66(7):2635-2642. doi: 10.1099/ijsem.0.001103. Epub 2016 Apr 20.

PMID:
27098854
7.

Draft Genome Sequence of Thermodesulfovibrio aggregans TGE-P1T, an Obligately Anaerobic, Thermophilic, Sulfate-Reducing Bacterium in the Phylum Nitrospirae.

Matsuura N, Ohashi A, Tourlousse DM, Sekiguchi Y.

Genome Announc. 2016 Mar 10;4(2). pii: e00089-16. doi: 10.1128/genomeA.00089-16.

8.

Draft Genome Sequence of the Syntrophic Lactate-Degrading Bacterium Tepidanaerobacter syntrophicus JLT.

Matsuura N, Ohashi A, Tourlousse DM, Sekiguchi Y.

Genome Announc. 2016 Feb 11;4(1). pii: e01712-15. doi: 10.1128/genomeA.01712-15.

9.

Isolation and characterization of Flexilinea flocculi gen. nov., sp. nov., a filamentous, anaerobic bacterium belonging to the class Anaerolineae in the phylum Chloroflexi.

Sun L, Toyonaga M, Ohashi A, Matsuura N, Tourlousse DM, Meng XY, Tamaki H, Hanada S, Cruz R, Yamaguchi T, Sekiguchi Y.

Int J Syst Evol Microbiol. 2016 Feb;66(2):988-996. doi: 10.1099/ijsem.0.000822. Epub 2015 Dec 4.

PMID:
26637817
10.

Selection of fluorescent DNA dyes for real-time LAMP with portable and simple optics.

Seyrig G, Stedtfeld RD, Tourlousse DM, Ahmad F, Towery K, Cupples AM, Tiedje JM, Hashsham SA.

J Microbiol Methods. 2015 Dec;119:223-7. doi: 10.1016/j.mimet.2015.11.004. Epub 2015 Nov 10.

PMID:
26554941
11.

Draft Genome Sequence of Bacteroidales Strain TBC1, a Novel Isolate from a Methanogenic Wastewater Treatment System.

Tourlousse DM, Matsuura N, Sun L, Toyonaga M, Kuroda K, Ohashi A, Cruz R, Yamaguchi T, Sekiguchi Y.

Genome Announc. 2015 Oct 8;3(5). pii: e01168-15. doi: 10.1128/genomeA.01168-15.

12.

Draft Genome Sequence of Bacteroidales Strain 6E, Isolated from a Rice Paddy Field in Japan.

Tourlousse DM, Honda T, Matsuura N, Ohashi A, Tonouchi A, Sekiguchi Y.

Genome Announc. 2015 Oct 8;3(5). pii: e01167-15. doi: 10.1128/genomeA.01167-15.

13.

Draft Genome Sequence of Anaerolineae Strain TC1, a Novel Isolate from a Methanogenic Wastewater Treatment System.

Matsuura N, Tourlousse DM, Sun L, Toyonaga M, Kuroda K, Ohashi A, Cruz R, Yamaguchi T, Sekiguchi Y.

Genome Announc. 2015 Oct 8;3(5). pii: e01104-15. doi: 10.1128/genomeA.01104-15.

15.

Sensitive and substrate-specific detection of metabolically active microorganisms in natural microbial consortia using community isotope arrays.

Tourlousse DM, Kurisu F, Tobino T, Furumai H.

FEMS Microbiol Lett. 2013 May;342(1):70-5. doi: 10.1111/1574-6968.12112. Epub 2013 Mar 22.

16.

A polymer microfluidic chip for quantitative detection of multiple water- and foodborne pathogens using real-time fluorogenic loop-mediated isothermal amplification.

Tourlousse DM, Ahmad F, Stedtfeld RD, Seyrig G, Tiedje JM, Hashsham SA.

Biomed Microdevices. 2012 Aug;14(4):769-78. doi: 10.1007/s10544-012-9658-3.

PMID:
22566273
17.

Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves.

Baushke SW, Stedtfeld RD, Tourlousse DM, Ahmad F, Wick LM, Gulari E, Tiedje JM, Hashsham SA.

J Microbiol Methods. 2012 Jul;90(1):29-35. doi: 10.1016/j.mimet.2012.04.003. Epub 2012 Apr 17.

18.

Gene-Z: a device for point of care genetic testing using a smartphone.

Stedtfeld RD, Tourlousse DM, Seyrig G, Stedtfeld TM, Kronlein M, Price S, Ahmad F, Gulari E, Tiedje JM, Hashsham SA.

Lab Chip. 2012 Apr 21;12(8):1454-62. doi: 10.1039/c2lc21226a. Epub 2012 Feb 29.

PMID:
22374412
19.

Complete mineralization of benzene by a methanogenic enrichment culture and effect of putative metabolites on the degradation.

Masumoto H, Kurisu F, Kasuga I, Tourlousse DM, Furumai H.

Chemosphere. 2012 Feb;86(8):822-8. doi: 10.1016/j.chemosphere.2011.11.051. Epub 2011 Dec 26.

PMID:
22205046
20.

A CCD-based fluorescence imaging system for real-time loop-mediated isothermal amplification-based rapid and sensitive detection of waterborne pathogens on microchips.

Ahmad F, Seyrig G, Tourlousse DM, Stedtfeld RD, Tiedje JM, Hashsham SA.

Biomed Microdevices. 2011 Oct;13(5):929-37. doi: 10.1007/s10544-011-9562-2.

PMID:
21720851
21.

Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray platform.

Stedtfeld RD, Baushke SW, Tourlousse DM, Miller SM, Stedtfeld TM, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2008 Jun;74(12):3831-8. doi: 10.1128/AEM.02743-07. Epub 2008 Apr 18.

22.

In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water.

Miller SM, Tourlousse DM, Stedtfeld RD, Baushke SW, Herzog AB, Wick LM, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2008 Apr;74(7):2200-9. doi: 10.1128/AEM.01962-07. Epub 2008 Feb 1.

23.

Virulence factor activity relationships: challenges and development approaches.

Tourlousse DM, Stedtfeld RD, Baushke SW, Wick LM, Hashsham SA.

Water Environ Res. 2007 Mar;79(3):246-59. Review.

PMID:
17469656
24.

Influence of dangling ends and surface-proximal tails of targets on probe-target duplex formation in 16S rRNA gene-based diagnostic arrays.

Stedtfeld RD, Wick LM, Baushke SW, Tourlousse DM, Herzog AB, Xia Y, Rouillard JM, Klappenbach JA, Cole JR, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2007 Jan;73(2):380-9. Epub 2006 Nov 17.

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