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Items: 1 to 50 of 57

1.

RumimiR: a detailed microRNA database focused on ruminant species.

Bourdon C, Bardou P, Aujean E, Le Guillou S, Tosser-Klopp G, Le Provost F.

Database (Oxford). 2019 Jan 1;2019. pii: baz099. doi: 10.1093/database/baz099.

2.

Alternative methods improve the accuracy of genomic prediction using information from a causal point mutation in a dairy sheep model.

Oget C, Teissier M, Astruc JM, Tosser-Klopp G, Rupp R.

BMC Genomics. 2019 Sep 18;20(1):719. doi: 10.1186/s12864-019-6068-4.

3.

Transcriptome variation in response to gastrointestinal nematode infection in goats.

Aboshady HM, Mandonnet N, Stear MJ, Arquet R, Bederina M, Sarry J, Tosser-Klopp G, Klopp C, Johansson AM, Jonas E, Bambou JC.

PLoS One. 2019 Jun 20;14(6):e0218719. doi: 10.1371/journal.pone.0218719. eCollection 2019.

4.

Divergent selection on milk somatic cell count in goats improves udder health and milk quality with no effect on nematode resistance.

Rupp R, Huau C, Caillat H, Fassier T, Bouvier F, Pampouille E, Clément V, Palhière I, Larroque H, Tosser-Klopp G, Jacquiet P, Rainard P.

J Dairy Sci. 2019 Jun;102(6):5242-5253. doi: 10.3168/jds.2018-15664. Epub 2019 Mar 21.

5.

A validation study of loci associated with mastitis resistance in two French dairy sheep breeds.

Oget C, Allain C, Portes D, Foucras G, Stella A, Astruc JM, Sarry J, Tosser-Klopp G, Rupp R.

Genet Sel Evol. 2019 Feb 13;51(1):5. doi: 10.1186/s12711-019-0448-8.

6.

AdaptMap: exploring goat diversity and adaptation.

Stella A, Nicolazzi EL, Van Tassell CP, Rothschild MF, Colli L, Rosen BD, Sonstegard TS, Crepaldi P, Tosser-Klopp G, Joost S; AdaptMap Consortium.

Genet Sel Evol. 2018 Nov 19;50(1):61. doi: 10.1186/s12711-018-0427-5. No abstract available.

7.

Functional SNP panel for parentage assessment and assignment in worldwide goat breeds.

Talenti A, Palhière I, Tortereau F, Pagnacco G, Stella A, Nicolazzi EL, Crepaldi P, Tosser-Klopp G; AdaptMap Consortium.

Genet Sel Evol. 2018 Nov 19;50(1):55. doi: 10.1186/s12711-018-0423-9.

8.

Signatures of selection and environmental adaptation across the goat genome post-domestication.

Bertolini F, Servin B, Talenti A, Rochat E, Kim ES, Oget C, Palhière I, Crisà A, Catillo G, Steri R, Amills M, Colli L, Marras G, Milanesi M, Nicolazzi E, Rosen BD, Van Tassell CP, Guldbrandtsen B, Sonstegard TS, Tosser-Klopp G, Stella A, Rothschild MF, Joost S, Crepaldi P; AdaptMap consortium.

Genet Sel Evol. 2018 Nov 19;50(1):57. doi: 10.1186/s12711-018-0421-y.

9.

Diversity of copy number variation in the worldwide goat population.

Liu M, Zhou Y, Rosen BD, Van Tassell CP, Stella A, Tosser-Klopp G, Rupp R, Palhière I, Colli L, Sayre B, Crepaldi P, Fang L, Mészáros G, Chen H, Liu GE; ADAPTmap Consortium.

Heredity (Edinb). 2019 May;122(5):636-646. doi: 10.1038/s41437-018-0150-6. Epub 2018 Nov 6.

PMID:
30401973
10.

Host factors determine the evolution of infection with Staphylococcus aureus to gangrenous mastitis in goats.

Rainard P, Gitton C, Chaumeil T, Fassier T, Huau C, Riou M, Tosser-Klopp G, Krupova Z, Chaize A, Gilbert FB, Rupp R, Martin P.

Vet Res. 2018 Jul 25;49(1):72. doi: 10.1186/s13567-018-0564-4.

11.

Convergent genomic signatures of domestication in sheep and goats.

Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, Joost S, Ajmone-Marsan P, Negrini R, Orlando L, Rezaei HR, Naderi S, Clarke L, Flicek P, Wincker P, Coissac E, Kijas J, Tosser-Klopp G, Chikhi A, Bruford MW, Taberlet P, Pompanon F.

Nat Commun. 2018 Mar 6;9(1):813. doi: 10.1038/s41467-018-03206-y.

12.

Author Correction: A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content.

Martin P, Palhière I, Maroteau C, Bardou P, Canale-Tabet K, Sarry J, Woloszyn F, Bertrand-Michel J, Racke I, Besir H, Rupp R, Tosser-Klopp G.

Sci Rep. 2018 Mar 1;8(1):4060. doi: 10.1038/s41598-018-22118-x.

13.

Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep.

Rochus CM, Tortereau F, Plisson-Petit F, Restoux G, Moreno-Romieux C, Tosser-Klopp G, Servin B.

BMC Genomics. 2018 Jan 23;19(1):71. doi: 10.1186/s12864-018-4447-x.

14.

Correction: Genome Wide Association Study Identifies New Loci Associated with Undesired Coat Color Phenotypes in Saanen Goats.

Martin PM, Palhière I, Ricard A, Tosser-Klopp G, Rupp R.

PLoS One. 2017 Oct 5;12(10):e0186029. doi: 10.1371/journal.pone.0186029. eCollection 2017.

15.

Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing pieces.

Amills M, Capote J, Tosser-Klopp G.

Anim Genet. 2017 Dec;48(6):631-644. doi: 10.1111/age.12598. Epub 2017 Sep 4. Review.

PMID:
28872195
16.

Corrigendum to "Heritability and genome-wide association mapping for supernumerary teats in French Alpine and Saanen dairy goats" (J. Dairy Sci. 99:8891-8900).

Martin P, Palhière I, Tosser-Klopp G, Rupp R.

J Dairy Sci. 2017 Sep;100(9):7750. doi: 10.3168/jds.2017-100-9-7750. No abstract available.

17.

Development of a SNP panel dedicated to parentage assignment in French sheep populations.

Tortereau F, Moreno CR, Tosser-Klopp G, Servin B, Raoul J.

BMC Genet. 2017 May 26;18(1):50. doi: 10.1186/s12863-017-0518-2.

18.

A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content.

Martin P, Palhière I, Maroteau C, Bardou P, Canale-Tabet K, Sarry J, Woloszyn F, Bertrand-Michel J, Racke I, Besir H, Rupp R, Tosser-Klopp G.

Sci Rep. 2017 May 12;7(1):1872. doi: 10.1038/s41598-017-02052-0. Erratum in: Sci Rep. 2018 Mar 1;8(1):4060.

19.

Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep.

Demars J, Cano M, Drouilhet L, Plisson-Petit F, Bardou P, Fabre S, Servin B, Sarry J, Woloszyn F, Mulsant P, Foulquier D, Carrière F, Aletru M, Rodde N, Cauet S, Bouchez O, Pirson M, Tosser-Klopp G, Allain D.

Mol Biol Evol. 2017 Jul 1;34(7):1722-1729. doi: 10.1093/molbev/msx114.

20.

Variant discovery in the sheep milk transcriptome using RNA sequencing.

Suárez-Vega A, Gutiérrez-Gil B, Klopp C, Tosser-Klopp G, Arranz JJ.

BMC Genomics. 2017 Feb 15;18(1):170. doi: 10.1186/s12864-017-3581-1.

21.

Differentially expressed genes and gene networks involved in pig ovarian follicular atresia.

Terenina E, Fabre S, Bonnet A, Monniaux D, Robert-Granié C, SanCristobal M, Sarry J, Vignoles F, Gondret F, Monget P, Tosser-Klopp G.

Physiol Genomics. 2017 Feb 1;49(2):67-80. doi: 10.1152/physiolgenomics.00069.2016. Epub 2016 Dec 9.

PMID:
27940565
22.

Heritability and genome-wide association mapping for supernumerary teats in French Alpine and Saanen dairy goats.

Martin P, Palhière I, Tosser-Klopp G, Rupp R.

J Dairy Sci. 2016 Nov;99(11):8891-8900. doi: 10.3168/jds.2016-11210. Epub 2016 Aug 17.

23.

Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome.

Suárez-Vega A, Gutiérrez-Gil B, Klopp C, Tosser-Klopp G, Arranz JJ.

Sci Data. 2016 Jul 5;3:160051. doi: 10.1038/sdata.2016.51.

24.

Genome Wide Association Study Identifies New Loci Associated with Undesired Coat Color Phenotypes in Saanen Goats.

Martin PM, Palhière I, Ricard A, Tosser-Klopp G, Rupp R.

PLoS One. 2016 Mar 31;11(3):e0152426. doi: 10.1371/journal.pone.0152426. eCollection 2016. Erratum in: PLoS One. 2017 Oct 5;12 (10 ):e0186029.

25.

Correction: Design and Characterization of a 52K SNP Chip for Goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Wang J, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2016 Mar 24;11(3):e0152632. doi: 10.1371/journal.pone.0152632. eCollection 2016. No abstract available.

26.

Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing.

Suárez-Vega A, Gutiérrez-Gil B, Klopp C, Robert-Granie C, Tosser-Klopp G, Arranz JJ.

Sci Rep. 2015 Dec 18;5:18399. doi: 10.1038/srep18399.

27.

A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model.

Rupp R, Senin P, Sarry J, Allain C, Tasca C, Ligat L, Portes D, Woloszyn F, Bouchez O, Tabouret G, Lebastard M, Caubet C, Foucras G, Tosser-Klopp G.

PLoS Genet. 2015 Dec 11;11(12):e1005629. doi: 10.1371/journal.pgen.1005629. eCollection 2015 Dec.

28.

Combining GWAS and RNA-Seq Approaches for Detection of the Causal Mutation for Hereditary Junctional Epidermolysis Bullosa in Sheep.

Suárez-Vega A, Gutiérrez-Gil B, Benavides J, Perez V, Tosser-Klopp G, Klopp C, Keennel SJ, Arranz JJ.

PLoS One. 2015 May 8;10(5):e0126416. doi: 10.1371/journal.pone.0126416. eCollection 2015.

29.

SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species.

Nicolazzi EL, Caprera A, Nazzicari N, Cozzi P, Strozzi F, Lawley C, Pirani A, Soans C, Brew F, Jorjani H, Evans G, Simpson B, Tosser-Klopp G, Brauning R, Williams JL, Stella A.

BMC Genomics. 2015 Apr 10;16:283. doi: 10.1186/s12864-015-1497-1.

30.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.

31.

Selection signatures in worldwide sheep populations.

Fariello MI, Servin B, Tosser-Klopp G, Rupp R, Moreno C; International Sheep Genomics Consortium, San Cristobal M, Boitard S.

PLoS One. 2014 Aug 15;9(8):e103813. doi: 10.1371/journal.pone.0103813. eCollection 2014.

32.

Genetic parameter estimation for major milk fatty acids in Alpine and Saanen primiparous goats.

Maroteau C, Palhière I, Larroque H, Clément V, Ferrand M, Tosser-Klopp G, Rupp R.

J Dairy Sci. 2014 May;97(5):3142-55. doi: 10.3168/jds.2013-7328. Epub 2014 Mar 5.

33.

Design and characterization of a 52K SNP chip for goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Jun Wang, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2014 Jan 22;9(1):e86227. doi: 10.1371/journal.pone.0086227. eCollection 2014. Erratum in: PLoS One. 2016;11(3):e0152632.

34.

Genome-wide association studies identify two novel BMP15 mutations responsible for an atypical hyperprolificacy phenotype in sheep.

Demars J, Fabre S, Sarry J, Rossetti R, Gilbert H, Persani L, Tosser-Klopp G, Mulsant P, Nowak Z, Drobik W, Martyniuk E, Bodin L.

PLoS Genet. 2013 Apr;9(4):e1003482. doi: 10.1371/journal.pgen.1003482. Epub 2013 Apr 25.

35.

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).

Dong Y, Xie M, Jiang Y, Xiao N, Du X, Zhang W, Tosser-Klopp G, Wang J, Yang S, Liang J, Chen W, Chen J, Zeng P, Hou Y, Bian C, Pan S, Li Y, Liu X, Wang W, Servin B, Sayre B, Zhu B, Sweeney D, Moore R, Nie W, Shen Y, Zhao R, Zhang G, Li J, Faraut T, Womack J, Zhang Y, Kijas J, Cockett N, Xu X, Zhao S, Wang J, Wang W.

Nat Biotechnol. 2013 Feb;31(2):135-41. doi: 10.1038/nbt.2478. Epub 2012 Dec 23.

PMID:
23263233
36.

Genetic diversity and investigation of polledness in divergent goat populations using 52 088 SNPs.

Kijas JW, Ortiz JS, McCulloch R, James A, Brice B, Swain B, Tosser-Klopp G; International Goat Genome Consortium.

Anim Genet. 2013 Jun;44(3):325-35. doi: 10.1111/age.12011. Epub 2012 Dec 6.

PMID:
23216229
37.

Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by laser capture microdissection.

Bonnet A, Bevilacqua C, Benne F, Bodin L, Cotinot C, Liaubet L, Sancristobal M, Sarry J, Terenina E, Martin P, Tosser-Klopp G, Mandon-Pepin B.

BMC Genomics. 2011 Aug 18;12:417. doi: 10.1186/1471-2164-12-417.

38.

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment.

Hedegaard J, Arce C, Bicciato S, Bonnet A, Buitenhuis B, Collado-Romero M, Conley LN, SanCristobal M, Ferrari F, Garrido JJ, Groenen MA, Hornshøj H, Hulsegge I, Jiang L, Jiménez-Marín Á, Kommadath A, Lagarrigue S, Leunissen JA, Liaubet L, Neerincx PB, Nie H, Poel JV, Prickett D, Ramirez-Boo M, Rebel JM, Robert-Granié C, Skarman A, Smits MA, Sørensen P, Tosser-Klopp G, Watson M.

BMC Proc. 2009 Jul 16;3 Suppl 4:S5.

39.

Gene network reconstruction from microarray data.

Jaffrezic F, Tosser-Klopp G.

BMC Proc. 2009 Jul 16;3 Suppl 4:S12. doi: 10.1186/1753-6561-3-S4-S12.

40.

Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares.

Bonnet A, Lagarrigue S, Liaubet L, Robert-Granié C, Sancristobal M, Tosser-Klopp G.

BMC Proc. 2009 Jul 16;3 Suppl 4:S11. doi: 10.1186/1753-6561-3-S4-S11.

41.

A pilot study on transcriptome data analysis of folliculogenesis in pigs.

Tosser-Klopp G, Lê Cao KA, Bonnet A, Gobert N, Hatey F, Robert-Granié C, Déjean S, Antic J, Baschet L, Sancristobal M.

Animal. 2009 Mar;3(3):393-401. doi: 10.1017/S1751731108003479.

PMID:
22444310
42.

In vivo gene expression in granulosa cells during pig terminal follicular development.

Bonnet A, Lê Cao KA, Sancristobal M, Benne F, Robert-Granié C, Law-So G, Fabre S, Besse P, De Billy E, Quesnel H, Hatey F, Tosser-Klopp G.

Reproduction. 2008 Aug;136(2):211-24. doi: 10.1530/REP-07-0312. Epub 2008 May 2.

PMID:
18456903
43.

A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation.

Bonnet A, Iannuccelli E, Hugot K, Benne F, Bonaldo MF, Soares MB, Hatey F, Tosser-Klopp G.

BMC Genomics. 2008 Jan 14;9:17. doi: 10.1186/1471-2164-9-17.

44.

Analysis of a simulated microarray dataset: comparison of methods for data normalisation and detection of differential expression (open access publication).

Watson M, Pérez-Alegre M, Baron MD, Delmas C, Dovc P, Duval M, Foulley JL, Garrido-Pavón JJ, Hulsegge I, Jaffrézic F, Jiménez-Marín A, Lavric M, Lê Cao KA, Marot G, Mouzaki D, Pool MH, Robert-Granié C, San Cristobal M, Tosser-Klopp G, Waddington D, de Koning DJ.

Genet Sel Evol. 2007 Nov-Dec;39(6):669-83. Epub 2007 Dec 6.

45.

Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication).

Sørensen P, Bonnet A, Buitenhuis B, Closset R, Déjean S, Delmas C, Duval M, Glass L, Hedegaard J, Hornshøj H, Hulsegge I, Jaffrézic F, Jensen K, Jiang L, de Koning DJ, Lê Cao KA, Nie H, Petzl W, Pool MH, Robert-Granié C, San Cristobal M, Lund MS, van Schothorst EM, Schuberth HJ, Seyfert HM, Tosser-Klopp G, Waddington D, Watson M, Yang W, Zerbe H.

Genet Sel Evol. 2007 Nov-Dec;39(6):651-68. Epub 2007 Dec 6.

46.

Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication).

Jaffrézic F, de Koning DJ, Boettcher PJ, Bonnet A, Buitenhuis B, Closset R, Déjean S, Delmas C, Detilleux JC, Dovc P, Duval M, Foulley JL, Hedegaard J, Hornshøj H, Hulsegge I, Janss L, Jensen K, Jiang L, Lavric M, Lê Cao KA, Lund MS, Malinverni R, Marot G, Nie H, Petzl W, Pool MH, Robert-Granié C, San Cristobal M, van Schothorst EM, Schuberth HJ, Sørensen P, Stella A, Tosser-Klopp G, Waddington D, Watson M, Yang W, Zerbe H, Seyfert HM.

Genet Sel Evol. 2007 Nov-Dec;39(6):633-50. Epub 2007 Dec 6.

47.

Longitudinal analysis of gene expression in porcine skeletal muscle after post-injection local injury.

Ferré PJ, Liaubet L, Concordet D, SanCristobal M, Uro-Coste E, Tosser-Klopp G, Bonnet A, Toutain PL, Hatey F, Lefebvre HP.

Pharm Res. 2007 Aug;24(8):1480-9. Epub 2007 Mar 23.

PMID:
17380264
48.

Identification of differential gene expression in in vitro FSH treated pig granulosa cells using suppression subtractive hybridization.

Bonnet A, Frappart PO, Dehais P, Tosser-Klopp G, Hatey F.

Reprod Biol Endocrinol. 2006 Jul 7;4:35.

49.

Contribution to high-resolution mapping in pigs with 101 type I markers and progress in comparative map between humans and pigs.

Lahbib-Mansais Y, Tosser-Klopp G, Leroux S, Cabau C, Karsenty E, Milan D, Barillot E, Yerle M, Hatey F, Gellin J.

Mamm Genome. 2003 Apr;14(4):275-88.

PMID:
12682780
50.

The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa).

Karsenty E, Barillot E, Tosser-Klopp G, Lahbib-Mansais Y, Milan D, Hatey F, Cirera S, Sawera M, Jørgensen CB, Chowdhary B, Fredholm M, Wimmers K, Ponsuksili S, Davoli R, Fontanesi L, Braglia S, Zambonelli P, Bigi D, Neuenschwander S, Gellin J.

Nucleic Acids Res. 2003 Jan 1;31(1):138-41.

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