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Items: 17

1.

Global transcriptome analysis of the aphelid Paraphelidium tribonemae supports the phagotrophic origin of fungi.

Torruella G, Grau-Bové X, Moreira D, Karpov SA, Burns JA, Sebé-Pedrós A, Völcker E, López-García P.

Commun Biol. 2018 Dec 19;1:231. doi: 10.1038/s42003-018-0235-z. eCollection 2018.

2.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.

Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q.

J Eukaryot Microbiol. 2019 Jan;66(1):4-119. doi: 10.1111/jeu.12691.

3.

Evolutionary Genomics of Metchnikovella incurvata (Metchnikovellidae): An Early Branching Microsporidium.

Galindo LJ, Torruella G, Moreira D, Timpano H, Paskerova G, Smirnov A, Nassonova E, López-García P.

Genome Biol Evol. 2018 Oct 1;10(10):2736-2748. doi: 10.1093/gbe/evy205.

4.

Clarifying the Relationships between Microsporidia and Cryptomycota.

Bass D, Czech L, Williams BAP, Berney C, Dunthorn M, Mahé F, Torruella G, Stentiford GD, Williams TA.

J Eukaryot Microbiol. 2018 Nov;65(6):773-782. doi: 10.1111/jeu.12519. Epub 2018 Apr 28.

5.

Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta).

López-Escardó D, López-García P, Moreira D, Ruiz-Trillo I, Torruella G.

J Eukaryot Microbiol. 2018 Mar;65(2):170-179. doi: 10.1111/jeu.12450. Epub 2017 Aug 12.

6.

Dynamics of genomic innovation in the unicellular ancestry of animals.

Grau-Bové X, Torruella G, Donachie S, Suga H, Leonard G, Richards TA, Ruiz-Trillo I.

Elife. 2017 Jul 20;6. pii: e26036. doi: 10.7554/eLife.26036.

7.

Molecular Phylogeny of Paraphelidium letcheri sp. nov. (Aphelida, Opisthosporidia).

Karpov SA, Torruella G, Moreira D, Mamkaeva MA, López-García P.

J Eukaryot Microbiol. 2017 Sep;64(5):573-578. doi: 10.1111/jeu.12389. Epub 2017 Jan 22.

8.

Phylogenetic and ecological diversity of apusomonads, a lineage of deep-branching eukaryotes.

Torruella G, Moreira D, López-García P.

Environ Microbiol Rep. 2017 Apr;9(2):113-119. doi: 10.1111/1758-2229.12507. Epub 2017 Jan 25.

9.

Morphological and Genetic Diversity of Opisthosporidia: New Aphelid Paraphelidium tribonemae gen. et sp. nov.

Karpov SA, Tcvetkova VS, Mamkaeva MA, Torruella G, Timpano H, Moreira D, Mamanazarova KS, López-García P.

J Eukaryot Microbiol. 2017 Mar;64(2):204-212. doi: 10.1111/jeu.12352. Epub 2016 Aug 23.

10.

Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi.

Torruella G, de Mendoza A, Grau-Bové X, Antó M, Chaplin MA, del Campo J, Eme L, Pérez-Cordón G, Whipps CM, Nichols KM, Paley R, Roger AJ, Sitjà-Bobadilla A, Donachie S, Ruiz-Trillo I.

Curr Biol. 2015 Sep 21;25(18):2404-10. doi: 10.1016/j.cub.2015.07.053. Epub 2015 Sep 10.

11.

Bacterial proteins pinpoint a single eukaryotic root.

Derelle R, Torruella G, Klimeš V, Brinkmann H, Kim E, Vlček Č, Lang BF, Eliáš M.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E693-9. doi: 10.1073/pnas.1420657112. Epub 2015 Feb 2.

12.

Earliest Holozoan expansion of phosphotyrosine signaling.

Suga H, Torruella G, Burger G, Brown MW, Ruiz-Trillo I.

Mol Biol Evol. 2014 Mar;31(3):517-28. doi: 10.1093/molbev/mst241. Epub 2013 Dec 3.

13.

Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.

de Mendoza A, Sebé-Pedrós A, Šestak MS, Matejcic M, Torruella G, Domazet-Loso T, Ruiz-Trillo I.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4858-66. doi: 10.1073/pnas.1311818110. Epub 2013 Nov 25.

14.

Early evolution of the T-box transcription factor family.

Sebé-Pedrós A, Ariza-Cosano A, Weirauch MT, Leininger S, Yang A, Torruella G, Adamski M, Adamska M, Hughes TR, Gómez-Skarmeta JL, Ruiz-Trillo I.

Proc Natl Acad Sci U S A. 2013 Oct 1;110(40):16050-5. doi: 10.1073/pnas.1309748110. Epub 2013 Sep 16.

15.

The Capsaspora genome reveals a complex unicellular prehistory of animals.

Suga H, Chen Z, de Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P, Vervoort M, Sánchez-Pons N, Torruella G, Derelle R, Manning G, Lang BF, Russ C, Haas BJ, Roger AJ, Nusbaum C, Ruiz-Trillo I.

Nat Commun. 2013;4:2325. doi: 10.1038/ncomms3325.

16.

Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains.

Torruella G, Derelle R, Paps J, Lang BF, Roger AJ, Shalchian-Tabrizi K, Ruiz-Trillo I.

Mol Biol Evol. 2012 Feb;29(2):531-44. doi: 10.1093/molbev/msr185. Epub 2011 Jul 18.

17.

The evolutionary history of lysine biosynthesis pathways within eukaryotes.

Torruella G, Suga H, Riutort M, Peretó J, Ruiz-Trillo I.

J Mol Evol. 2009 Sep;69(3):240-8. doi: 10.1007/s00239-009-9266-x. Epub 2009 Aug 11.

PMID:
19669682

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