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Items: 38

1.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Sep;37(9):1091. doi: 10.1038/s41587-019-0252-6.

PMID:
31399723
2.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. No abstract available. Erratum in: Nat Biotechnol. 2019 Sep;37(9):1091.

PMID:
31341288
3.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8.

PMID:
31285584
4.

Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center.

Prussin AJ 2nd, Torres PJ, Shimashita J, Head SR, Bibby KJ, Kelley ST, Marr LC.

Microbiome. 2019 Apr 1;7(1):53. doi: 10.1186/s40168-019-0672-z.

5.

Exposure to a Healthy Gut Microbiome Protects Against Reproductive and Metabolic Dysregulation in a PCOS Mouse Model.

Torres PJ, Ho BS, Arroyo P, Sau L, Chen A, Kelley ST, Thackray VG.

Endocrinology. 2019 May 1;160(5):1193-1204. doi: 10.1210/en.2019-00050.

PMID:
30924862
6.

Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice.

Torres PJ, Skarra DV, Ho BS, Sau L, Anvar AR, Kelley ST, Thackray VG.

BMC Microbiol. 2019 Mar 12;19(1):57. doi: 10.1186/s12866-019-1425-7.

7.

ATRX, DAXX or MEN1 mutant pancreatic neuroendocrine tumors are a distinct alpha-cell signature subgroup.

Chan CS, Laddha SV, Lewis PW, Koletsky MS, Robzyk K, Da Silva E, Torres PJ, Untch BR, Li J, Bose P, Chan TA, Klimstra DS, Allis CD, Tang LH.

Nat Commun. 2018 Oct 12;9(1):4158. doi: 10.1038/s41467-018-06498-2.

8.

The role of intragestational ghrelin on postnatal development and reproductive programming in mice

Torres PJ, Luque EM, Ponzio MF, Cantarelli V, Diez M, Figueroa S, Vincenti LM, Carlini VP, Martini AC.

Reproduction. 2018 Oct 1;156(4):331–341. doi: 10.1530/REP-18-0192.

PMID:
30306766
9.

PAHs contamination in edible gastropods from north Patagonian harbor areas.

Primost MA, Commendatore M, Torres PJ, Bigatti G.

Mar Pollut Bull. 2018 Oct;135:828-831. doi: 10.1016/j.marpolbul.2018.08.021. Epub 2018 Aug 10.

PMID:
30301103
10.

THE ROLE OF INTRAGESTATIONAL GHRELIN ON POSTNATAL DEVELOPMENT AND REPRODUCTIVE PROGRAMMING IN MICE.

Torres PJ, Luque EM, Ponzio MF, Cantarelli V, Diez M, Figueroa S, Vincenti LM, Carlini VP, Martini AC.

Reproduction. 2018 Jul 10. pii: REP-18-0192. doi: 10.1530/REP-18-0192. [Epub ahead of print]

PMID:
29991568
11.

Discovery of a Novel Periodontal Disease-Associated Bacterium.

Torres PJ, Thompson J, McLean JS, Kelley ST, Edlund A.

Microb Ecol. 2019 Jan;77(1):267-276. doi: 10.1007/s00248-018-1200-6. Epub 2018 Jun 2.

12.

Effects of moderate, voluntary ethanol consumption on the rat and human gut microbiome.

Kosnicki KL, Penprase JC, Cintora P, Torres PJ, Harris GL, Brasser SM, Kelley ST.

Addict Biol. 2019 Jul;24(4):617-630. doi: 10.1111/adb.12626. Epub 2018 May 11.

PMID:
29750384
13.

Effects of diffusion on total biomass in simple metacommunities.

Ruiz-Herrera A, Torres PJ.

J Theor Biol. 2018 Jun 14;447:12-24. doi: 10.1016/j.jtbi.2018.03.018. Epub 2018 Mar 14.

PMID:
29550452
14.

Gut Microbial Diversity in Women With Polycystic Ovary Syndrome Correlates With Hyperandrogenism.

Torres PJ, Siakowska M, Banaszewska B, Pawelczyk L, Duleba AJ, Kelley ST, Thackray VG.

J Clin Endocrinol Metab. 2018 Apr 1;103(4):1502-1511. doi: 10.1210/jc.2017-02153.

15.

Sampling, Extraction, and High-Throughput Sequencing Methods for Environmental Microbial and Viral Communities.

Torres PJ, Kelley ST.

Methods Mol Biol. 2018;1712:163-173. doi: 10.1007/978-1-4939-7514-3_11.

PMID:
29224074
16.

Endosymbiont interference and microbial diversity of the Pacific coast tick, Dermacentor occidentalis, in San Diego County, California.

Gurfield N, Grewal S, Cua LS, Torres PJ, Kelley ST.

PeerJ. 2017 Apr 13;5:e3202. doi: 10.7717/peerj.3202. eCollection 2017.

17.

PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.

Torres PJ, Edwards RA, McNair KA.

Bioinformatics. 2017 Aug 1;33(15):2389-2391. doi: 10.1093/bioinformatics/btx184.

18.

Summer Freezing Resistance: A Critical Filter for Plant Community Assemblies in Mediterranean High Mountains.

Pescador DS, Sierra-Almeida Á, Torres PJ, Escudero A.

Front Plant Sci. 2016 Feb 22;7:194. doi: 10.3389/fpls.2016.00194. eCollection 2016.

19.

Characterization of the salivary microbiome in patients with pancreatic cancer.

Torres PJ, Fletcher EM, Gibbons SM, Bouvet M, Doran KS, Kelley ST.

PeerJ. 2015 Nov 5;3:e1373. doi: 10.7717/peerj.1373. eCollection 2015.

20.
21.

Periodic oscillations of a model for membrane permeability with fluctuating environmental conditions.

Torres PJ.

J Math Biol. 2015 Jul;71(1):57-68. doi: 10.1007/s00285-014-0815-6. Epub 2014 Jul 14.

PMID:
25017486
22.

Role of ghrelin in fertilization, early embryo development, and implantation periods.

Luque EM, Torres PJ, de Loredo N, Vincenti LM, Stutz G, Santillán ME, Ruiz RD, de Cuneo MF, Martini AC.

Reproduction. 2014 Aug;148(2):159-67. doi: 10.1530/REP-14-0129. Epub 2014 May 12.

PMID:
24821833
23.

Dynamics of a few corotating vortices in Bose-Einstein condensates.

Navarro R, Carretero-González R, Torres PJ, Kevrekidis PG, Frantzeskakis DJ, Ray MW, Altuntaş E, Hall DS.

Phys Rev Lett. 2013 May 31;110(22):225301. Epub 2013 May 28.

PMID:
23767732
24.

Lie symmetries and solitons in nonlinear systems with spatially inhomogeneous nonlinearities.

Belmonte-Beitia J, Pérez-García VM, Vekslerchik V, Torres PJ.

Phys Rev Lett. 2007 Feb 9;98(6):064102. Epub 2007 Feb 5.

PMID:
17358944
25.

The births of five Spanish babies from cryopreserved donated oocytes.

Fosas N, Marina F, Torres PJ, Jové I, Martín P, Pérez N, Arnedo N, Marina S.

Hum Reprod. 2003 Jul;18(7):1417-21.

PMID:
12832365
26.

Does the use of contraception reduce the risk of pregnancy-induced hypertension?

Gratacós E, Torres PJ, Cararach V, Quinto L, Alonso PL, Fortuny A.

Hum Reprod. 1996 Oct;11(10):2138-41.

PMID:
8943518
27.

Platelet sensitivity to prostaglandin E1 inhibition is reduced in pre-eclampsia but not in nonproteinuric gestational hypertension.

Torres PJ, Escolar G, Palacio M, Gratacós E, Alonso PL, Ordinas A.

Br J Obstet Gynaecol. 1996 Jan;103(1):19-24.

PMID:
8608092
28.

Prevalence and clinical significance of anticardiolipin antibodies in pregnancies complicated by parvovirus B19 infection.

Gratacós E, Torres PJ, Vidal J, Font J, Antolin E, Cararach V, Fortuny A.

Prenat Diagn. 1995 Dec;15(12):1109-13.

PMID:
8750289
29.

Cortical blindness in preeclampsia: diagnostic evaluation by transcranial Doppler and magnetic resonance imaging techniques.

Torres PJ, Antolin E, Gratacós E, Chamorro A, Cararach V.

Acta Obstet Gynecol Scand. 1995 Sep;74(8):642-4. No abstract available.

PMID:
7660773
30.

Umbilical artery Doppler ultrasound predicts low birth weight and fetal death in hypertensive pregnancies.

Torres PJ, Gratacós E, Alonso PL.

Acta Obstet Gynecol Scand. 1995 May;74(5):352-5.

PMID:
7778426
31.

The incidence of human parvovirus B19 infection during pregnancy and its impact on perinatal outcome.

Gratacós E, Torres PJ, Vidal J, Antolín E, Costa J, Jiménez de Anta MT, Cararach V, Alonso PL, Fortuny A.

J Infect Dis. 1995 May;171(5):1360-3.

PMID:
7751717
32.

Acardius acephalus after ovulation induction by clomiphene.

Martínez-Román S, Torres PJ, Puerto B.

Teratology. 1995 Apr;51(4):231-2. No abstract available.

PMID:
7570363
33.

Screening and treatment of asymptomatic bacteriuria in pregnancy prevent pyelonephritis.

Gratacós E, Torres PJ, Vila J, Alonso PL, Cararach V.

J Infect Dis. 1994 Jun;169(6):1390-2.

PMID:
8195624
34.

Antithyroid antibodies underlying thyroid abnormalities and miscarriage or pregnancy induced hypertension.

Gratacós E, Torres PJ.

Br J Obstet Gynaecol. 1994 May;101(5):461-2. No abstract available.

PMID:
8018628
35.

Maternal primary pulmonary hypertension associated with pregnancy.

Martínez JM, Comas C, Sala X, Gratacós E, Torres PJ, Fortuny A.

Eur J Obstet Gynecol Reprod Biol. 1994 Apr;54(2):143-7. Review.

PMID:
8070600
36.

Primary pulmonary hypertension and pre-eclampsia: a successful pregnancy.

Torres PJ, Gratacós E, Magriñá J, Martínez-Crespo JM, Cardrach V.

Br J Obstet Gynaecol. 1994 Feb;101(2):163-5. No abstract available.

PMID:
8305394
37.

Use of cocaine during pregnancy.

Gratacós E, Torres PJ, Antolín E.

N Engl J Med. 1993 Aug 26;329(9):667. No abstract available.

PMID:
8341359
38.

[Program and organization of medical care in an outpatient clinic for following up infants of low weight birth].

Cerón A, Torres PJ, Ortiz C, Grandón R.

Rev Chil Pediatr. 1977 Mar-Apr;48(2):103-8. Spanish. No abstract available.

PMID:
616940

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