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Theoretical considerations on programmatic assessment.

Torre DM, Schuwirth LWT, Van der Vleuten CPM.

Med Teach. 2019 Oct 17:1-8. doi: 10.1080/0142159X.2019.1672863. [Epub ahead of print]


In Response to RE: Uniformed Services University Women's Enrollment and Career Choices in Military Medicine: A Retrospective Descriptive Analysis.

Cervero RM, Battista A, Schreiber-Gregory DN, Konopasky A, Torre D, Maggio LA, Boulet JR, Reamy BV, Durning SJ.

Mil Med. 2019 Oct 11. pii: usz282. doi: 10.1093/milmed/usz282. [Epub ahead of print] No abstract available.


Early identification of struggling learners: using prematriculation and early academic performance data.

Bennion LD, Torre D, Durning SJ, Mears D, Schreiber-Gregory D, Servey JT, Cruess DF, Yoon M, Dong T.

Perspect Med Educ. 2019 Sep 27. doi: 10.1007/s40037-019-00539-2. [Epub ahead of print]


Programmed chromosome fission and fusion enable precise large-scale genome rearrangement and assembly.

Wang K, de la Torre D, Robertson WE, Chin JW.

Science. 2019 Aug 30;365(6456):922-926. doi: 10.1126/science.aay0737.


Dynamic Measurement in Health Professions Education: Rationale, Application, and Possibilities.

Dumas D, McNeish D, Schreiber-Gregory D, Durning SJ, Torre DM.

Acad Med. 2019 Sep;94(9):1323-1328. doi: 10.1097/ACM.0000000000002729.


Trust in Group Decisions: a scoping review.

Sapp JE, Torre DM, Larsen KL, Holmboe ES, Durning SJ.

BMC Med Educ. 2019 Aug 14;19(1):309. doi: 10.1186/s12909-019-1726-4.


A seminested RT-PCR for molecular genotyping of the Brazilian BR-I Infectious Bronchitis Virus Strain (GI-11).

Chacón RD, Astolfi-Ferreira CS, Chacón JL, Nuñez LFN, De la Torre DI, Piantino Ferreira AJ.

Mol Cell Probes. 2019 Oct;47:101426. doi: 10.1016/j.mcp.2019.101426. Epub 2019 Jul 28.


ChEA3: transcription factor enrichment analysis by orthogonal omics integration.

Keenan AB, Torre D, Lachmann A, Leong AK, Wojciechowicz ML, Utti V, Jagodnik KM, Kropiwnicki E, Wang Z, Ma'ayan A.

Nucleic Acids Res. 2019 Jul 2;47(W1):W212-W224. doi: 10.1093/nar/gkz446.


Geneshot: search engine for ranking genes from arbitrary text queries.

Lachmann A, Schilder BM, Wojciechowicz ML, Torre D, Kuleshov MV, Keenan AB, Ma'ayan A.

Nucleic Acids Res. 2019 Jul 2;47(W1):W571-W577. doi: 10.1093/nar/gkz393.


Medical Student Leader Performance in an Applied Medical Field Practicum.

Barry ES, Dong T, Durning SJ, Schreiber-Gregory D, Torre D, Grunberg NE.

Mil Med. 2019 May 21. pii: usz121. doi: 10.1093/milmed/usz121. [Epub ahead of print]


Use of an e‑portfolio mapping tool: connecting experiences, analysis and action by learners.

Heeneman S, Driessen E, Durning SJ, Torre D.

Perspect Med Educ. 2019 Jun;8(3):197-200. doi: 10.1007/s40037-019-0514-5.


Total synthesis of Escherichia coli with a recoded genome.

Fredens J, Wang K, de la Torre D, Funke LFH, Robertson WE, Christova Y, Chia T, Schmied WH, Dunkelmann DL, Beránek V, Uttamapinant C, Llamazares AG, Elliott TS, Chin JW.

Nature. 2019 May;569(7757):514-518. doi: 10.1038/s41586-019-1192-5. Epub 2019 May 15.


Draft Genome Sequences of Four Salmonella enterica subsp. enterica Serovar Gallinarum Strains Isolated from Layer Breeder Flocks in an Outbreak of Fowl Typhoid in Colombia.

Chacón RD, Moura Q, Astolfi-Ferreira CS, De la Torre DI, Guerrero LMC, Martínez LAR, Corzo AN, Morales López NH, Ramírez M, Lincopan N, Piantino Ferreira AJ.

Microbiol Resour Announc. 2019 Apr 25;8(17). pii: e00122-19. doi: 10.1128/MRA.00122-19.


Correction to: Intraoperative Imaging with a Portable Gamma Camera May Reduce the False-Negative Rate for Melanoma Sentinel Lymph Node Surgery.

Leong SP, Wu M, Lu Y, Torre DM, von Bakonyi A, Ospina AM, Newsom JD, Luckett WS, Soon CW, Kim KB, Kashani-Sabet M.

Ann Surg Oncol. 2019 Feb 25. doi: 10.1245/s10434-019-07233-x. [Epub ahead of print]


Clinical Reasoning in the Primary Care Setting: Two Scenario-Based Simulations for Residents and Attendings.

Battista A, Konopasky A, Ramani D, Ohmer M, Mikita J, Howle A, Krajnik S, Torre D, Durning SJ.

MedEdPORTAL. 2018 Nov 16;14:10773. doi: 10.15766/mep_2374-8265.10773.


The Clinical Reasoning Mapping Exercise (CResME): a new tool for exploring clinical reasoning.

Torre DM, Hernandez CA, Castiglioni A, Durning SJ, Daley BJ, Hemmer PA, LaRochelle J.

Perspect Med Educ. 2019 Feb;8(1):47-51. doi: 10.1007/s40037-018-0493-y.


Sensitive SYBR Green-Real Time PCR for the Detection and Quantitation of Avian Rotavirus A.

De la Torre D, Astolfi-Ferreira CS, Chacon RD, Piantino Ferreira AJ.

Vet Sci. 2018 Dec 29;6(1). pii: E2. doi: 10.3390/vetsci6010002.


A mixed-methods exploration of cognitive dispositions to respond and clinical reasoning errors with multiple choice questions.

Surry LT, Torre D, Trowbridge RL, Durning SJ.

BMC Med Educ. 2018 Nov 23;18(1):277. doi: 10.1186/s12909-018-1372-2.


BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.

Torre D, Lachmann A, Ma'ayan A.

Cell Syst. 2018 Nov 28;7(5):556-561.e3. doi: 10.1016/j.cels.2018.10.007. Epub 2018 Nov 14.


Uniformed Services University Women's Enrollment and Career Choices in Military Medicine: A Retrospective Descriptive Analysis.

Cervero RM, Battista A, Schreiber-Gregory DN, Konopasky A, Torre D, Maggio LA, Boulet JR, Reamy BV, Durning SJ.

Mil Med. 2019 May 1;184(5-6):e158-e163. doi: 10.1093/milmed/usy265.


Isolation of avian nephritis virus from chickens showing enteric disorders.

Nuñez LFN, Parra SHS, De la Torre D, Catroxo MH, Buim MR, Chacon RV, Ferreira CSA, Piantino Ferreira AJ.

Poult Sci. 2018 Oct 1;97(10):3478-3488. doi: 10.3382/ps/pey207.


Intraoperative Imaging with a Portable Gamma Camera May Reduce the False-Negative Rate for Melanoma Sentinel Lymph Node Surgery.

Leong SP, Wu M, Lu Y, Torre DM, von Bakonyi A, Ospina AM, Newsom JD, Luckett WS, Soon CW, Kim KB, Kashani-Sabet M.

Ann Surg Oncol. 2018 Oct;25(11):3326-3333. doi: 10.1245/s10434-018-6685-1. Epub 2018 Aug 13. Erratum in: Ann Surg Oncol. 2019 Feb 25;:.


Ultrasonography of traumatic injuries to limb peripheral nerves: technical aspects and spectrum of features.

Visalli C, Cavallaro M, Concerto A, La Torre D, Di Salvo R, Mazziotti S, Salamone I.

Jpn J Radiol. 2018 Oct;36(10):592-602. doi: 10.1007/s11604-018-0765-9. Epub 2018 Aug 13. Review.


Silencing of telomere-binding protein adrenocortical dysplasia (ACD) homolog enhances radiosensitivity in glioblastoma cells.

Polito F, Cucinotta M, Abbritti RV, Brogna A, Pergolizzi S, Tomasello C, Barresi V, Angileri FF, Di Giorgio R, Conti A, La Torre D, Germanò A, Aguennouz M.

Transl Res. 2018 Dec;202:99-108. doi: 10.1016/j.trsl.2018.07.005. Epub 2018 Jul 20.


A Novel Diagnostic and Prognostic Tool for Simple Decompression of Ulnar Nerve in Cubital Tunnel Syndrome.

La Torre D, Raffa G, Pino MA, Fodale V, Rizzo V, Visalli C, Guzzi G, Della Torre A, Lavano A, Germanò A.

World Neurosurg. 2018 Oct;118:e964-e973. doi: 10.1016/j.wneu.2018.07.123. Epub 2018 Jul 23.


Development of a Sensitive Real-Time Fast-qPCR Based on SYBR® Green for Detection and Quantification of Chicken Parvovirus (ChPV).

Nuñez LF, Santander-Parra SH, Chaible L, De la Torre DI, Buim MR, Murakami A, Zaidan Dagli ML, Astolfi-Ferreira CS, Piantino Ferreira AJ.

Vet Sci. 2018 Jul 25;5(3). pii: E69. doi: 10.3390/vetsci5030069.


Specialty Choices, Practice Characteristics, and Long-term Outcomes of Two Cohorts of USUHS Medical School Graduates Compared with National Data.

Torre D, Schreiber-Gregory D, Boulet JR, Cervero RM, Hemmer P, Pangaro LN, Durning SJ.

Mil Med. 2019 Jan 1;184(1-2):e65-e70. doi: 10.1093/milmed/usy158.


Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.

Stathias V, Koleti A, Vidović D, Cooper DJ, Jagodnik KM, Terryn R, Forlin M, Chung C, Torre D, Ayad N, Medvedovic M, Ma'ayan A, Pillai A, Schürer SC.

Sci Data. 2018 Jun 19;5:180117. doi: 10.1038/sdata.2018.117.


Fractal attractors in economic growth models with random pollution externalities.

La Torre D, Marsiglio S, Privileggi F.

Chaos. 2018 May;28(5):055916. doi: 10.1063/1.5023782.


Untying the Gordian knot: remediation problems in medical schools that need remediation.

Bennion LD, Durning SJ, LaRochelle J, Yoon M, Schreiber-Gregory D, Reamy BV, Torre D.

BMC Med Educ. 2018 May 31;18(1):120. doi: 10.1186/s12909-018-1219-x.


Molecular characterization of canine parvovirus variants (CPV-2a, CPV-2b, and CPV-2c) based on the VP2 gene in affected domestic dogs in Ecuador.

De la Torre D, Mafla E, Puga B, Erazo L, Astolfi-Ferreira C, Ferreira AP.

Vet World. 2018 Apr;11(4):480-487. doi: 10.14202/vetworld.2018.480-487. Epub 2018 Apr 16.


eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

Clarke DJB, Kuleshov MV, Schilder BM, Torre D, Duffy ME, Keenan AB, Lachmann A, Feldmann AS, Gundersen GW, Silverstein MC, Wang Z, Ma'ayan A.

Nucleic Acids Res. 2018 Jul 2;46(W1):W171-W179. doi: 10.1093/nar/gky458.


Petrosal Meningiomas: Factors Affecting Outcome and the Role of Intraoperative Multimodal Assistance to Microsurgery.

Tomasello F, Angileri FF, Conti A, Scibilia A, Cardali S, La Torre D, Germanò A.

Neurosurgery. 2019 Jun 1;84(6):1313-1324. doi: 10.1093/neuros/nyy188.


Honoring Thyself in the Transition to Online Teaching.

Maggio LA, Daley BJ, Pratt DD, Torre DM.

Acad Med. 2018 Aug;93(8):1129-1134. doi: 10.1097/ACM.0000000000002285.


Human papillomavirus prevalence in a Mid-European oral squamous cell cancer population: A cohort study.

Dalla Torre D, Burtscher D, Soelder E, Offermanns V, Rasse M, Puelacher W.

Oral Dis. 2018 Sep;24(6):948-956. doi: 10.1111/odi.12882. Epub 2018 Jun 8.


Massive mining of publicly available RNA-seq data from human and mouse.

Lachmann A, Torre D, Keenan AB, Jagodnik KM, Lee HJ, Wang L, Silverstein MC, Ma'ayan A.

Nat Commun. 2018 Apr 10;9(1):1366. doi: 10.1038/s41467-018-03751-6.


Molecular characterization of fowl adenovirus group I in commercial broiler chickens in Brazil.

De la Torre D, Nuñez LFN, Santander Parra SH, Astolfi-Ferreira CS, Piantino Ferreira AJ.

Virusdisease. 2018 Mar;29(1):83-88. doi: 10.1007/s13337-018-0430-z. Epub 2018 Feb 13.


Enteric Virus Diversity Examined by Molecular Methods in Brazilian Poultry Flocks.

De la Torre DI, Nuñez LF, Astolfi-Ferreira CS, Piantino Ferreira AJ.

Vet Sci. 2018 Mar 29;5(2). pii: E38. doi: 10.3390/vetsci5020038.


Staying Power: Does the Uniformed Services University Continue to Meet Its Obligation to the Nation's Health Care Needs?

Cervero RM, Torre D, Durning SJ, Schreiber-Gregory D, Reamy BV, Pangaro LN, Boulet JR.

Mil Med. 2018 Sep 1;183(9-10):e277-e280. doi: 10.1093/milmed/usx205.


The correlation between the quality of oral hygiene and oral HPV infection in adults: a prospective cross-sectional study.

Dalla Torre D, Burtscher D, Sölder E, Rasse M, Puelacher W.

Clin Oral Investig. 2019 Jan;23(1):179-185. doi: 10.1007/s00784-018-2425-y. Epub 2018 Mar 25.


Cell-autonomous and cell non-autonomous downregulation of tumor suppressor DAB2IP by microRNA-149-3p promotes aggressiveness of cancer cells.

Bellazzo A, Di Minin G, Valentino E, Sicari D, Torre D, Marchionni L, Serpi F, Stadler MB, Taverna D, Zuccolotto G, Montagner IM, Rosato A, Tonon F, Zennaro C, Agostinis C, Bulla R, Mano M, Del Sal G, Collavin L.

Cell Death Differ. 2018 Jul;25(7):1224-1238. doi: 10.1038/s41418-018-0088-5. Epub 2018 Mar 22.


Using a Community Bus Tour for Pediatric Residents to Increase Their Knowledge of Health Disparities.

Lichtenstein C, de la Torre D, Falusi O, Sims A, Smiley Y, Baiyewu M.

Acad Pediatr. 2018 Aug;18(6):717-719. doi: 10.1016/j.acap.2018.03.004. Epub 2018 Mar 9.


Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses.

Torre D, Krawczuk P, Jagodnik KM, Lachmann A, Wang Z, Wang L, Kuleshov MV, Ma'ayan A.

Sci Data. 2018 Feb 27;5:180023. doi: 10.1038/sdata.2018.23.


Using Relational Reasoning Strategies to Help Improve Clinical Reasoning Practice.

Dumas D, Torre DM, Durning SJ.

Acad Med. 2018 May;93(5):709-714. doi: 10.1097/ACM.0000000000002114.


Sexual Dimorphism and Estrogen Action in Mouse Liver.

Torre D, Lolli F, Ciana P, Maggi A.

Adv Exp Med Biol. 2017;1043:141-151. doi: 10.1007/978-3-319-70178-3_8. Review. Erratum in: Adv Exp Med Biol. 2017;1043:E1.


The Impact of Diffusion Tensor Imaging Fiber Tracking of the Corticospinal Tract Based on Navigated Transcranial Magnetic Stimulation on Surgery of Motor-Eloquent Brain Lesions.

Raffa G, Conti A, Scibilia A, Cardali SM, Esposito F, Angileri FF, La Torre D, Sindorio C, Abbritti RV, Germanò A, Tomasello F.

Neurosurgery. 2018 Oct 1;83(4):768-782. doi: 10.1093/neuros/nyx554.


The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Keenan AB, Jenkins SL, Jagodnik KM, Koplev S, He E, Torre D, Wang Z, Dohlman AB, Silverstein MC, Lachmann A, Kuleshov MV, Ma'ayan A, Stathias V, Terryn R, Cooper D, Forlin M, Koleti A, Vidovic D, Chung C, Schürer SC, Vasiliauskas J, Pilarczyk M, Shamsaei B, Fazel M, Ren Y, Niu W, Clark NA, White S, Mahi N, Zhang L, Kouril M, Reichard JF, Sivaganesan S, Medvedovic M, Meller J, Koch RJ, Birtwistle MR, Iyengar R, Sobie EA, Azeloglu EU, Kaye J, Osterloh J, Haston K, Kalra J, Finkbiener S, Li J, Milani P, Adam M, Escalante-Chong R, Sachs K, Lenail A, Ramamoorthy D, Fraenkel E, Daigle G, Hussain U, Coye A, Rothstein J, Sareen D, Ornelas L, Banuelos M, Mandefro B, Ho R, Svendsen CN, Lim RG, Stocksdale J, Casale MS, Thompson TG, Wu J, Thompson LM, Dardov V, Venkatraman V, Matlock A, Van Eyk JE, Jaffe JD, Papanastasiou M, Subramanian A, Golub TR, Erickson SD, Fallahi-Sichani M, Hafner M, Gray NS, Lin JR, Mills CE, Muhlich JL, Niepel M, Shamu CE, Williams EH, Wrobel D, Sorger PK, Heiser LM, Gray JW, Korkola JE, Mills GB, LaBarge M, Feiler HS, Dane MA, Bucher E, Nederlof M, Sudar D, Gross S, Kilburn DF, Smith R, Devlin K, Margolis R, Derr L, Lee A, Pillai A.

Cell Syst. 2018 Jan 24;6(1):13-24. doi: 10.1016/j.cels.2017.11.001. Epub 2017 Nov 29. Review.


Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.

Koleti A, Terryn R, Stathias V, Chung C, Cooper DJ, Turner JP, Vidovic D, Forlin M, Kelley TT, D'Urso A, Allen BK, Torre D, Jagodnik KM, Wang L, Jenkins SL, Mader C, Niu W, Fazel M, Mahi N, Pilarczyk M, Clark N, Shamsaei B, Meller J, Vasiliauskas J, Reichard J, Medvedovic M, Ma'ayan A, Pillai A, Schürer SC.

Nucleic Acids Res. 2018 Jan 4;46(D1):D558-D566. doi: 10.1093/nar/gkx1063.


Concept Maps: Definition, Structure, and Scoring.

Torre DM, Durning SJ, Daley BJ.

Acad Med. 2017 Dec;92(12):1802. doi: 10.1097/ACM.0000000000001969. No abstract available.


Exploring examinee behaviours as validity evidence for multiple-choice question examinations.

Surry LT, Torre D, Durning SJ.

Med Educ. 2017 Oct;51(10):1075-1085. doi: 10.1111/medu.13367. Epub 2017 Jul 31.


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