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Items: 50

1.

Non-antibiotic Small-Molecule Regulation of DHFR-Based Destabilizing Domains In Vivo.

Peng H, Chau VQ, Phetsang W, Sebastian RM, Stone MRL, Datta S, Renwick M, Tamer YT, Toprak E, Koh AY, Blaskovich MAT, Hulleman JD.

Mol Ther Methods Clin Dev. 2019 Aug 15;15:27-39. doi: 10.1016/j.omtm.2019.08.002. eCollection 2019 Dec 13.

2.

Rapid ultrasensitive detection platform for antimicrobial susceptibility testing.

Cansizoglu MF, Tamer YT, Farid M, Koh AY, Toprak E.

PLoS Biol. 2019 May 30;17(5):e3000291. doi: 10.1371/journal.pbio.3000291. eCollection 2019 May.

3.

High-Order Epistasis in Catalytic Power of Dihydrofolate Reductase Gives Rise to a Rugged Fitness Landscape in the Presence of Trimethoprim Selection.

Tamer YT, Gaszek IK, Abdizadeh H, Batur TA, Reynolds KA, Atilgan AR, Atilgan C, Toprak E.

Mol Biol Evol. 2019 Jul 1;36(7):1533-1550. doi: 10.1093/molbev/msz086.

4.

Prenatal Diagnosis and Intrapartum Management of Congenital Ranula.

Ercan F, Sarikaya M, Toprak E, Findik S, Arbag H, Acar A.

Z Geburtshilfe Neonatol. 2018 Dec;222(6):262-265. doi: 10.1055/a-0660-9808. Epub 2018 Dec 10.

PMID:
30536262
5.

The relationship between placental transfusion, and thymic size and neonatal morbidities in premature infants - A Randomized Control Trial

Silahli M, Duman E, Gokmen Z, Toprak E, Gokdemir M, Ecevit A.

J Pak Med Assoc. 2018 Nov;68(11):1560-1565.

6.

Evaluation of the relationship between compliance with the follow-up and treatment protocol and health literacy in bladder tumor patients.

Turkoglu AR, Demirci H, Coban S, Guzelsoy M, Toprak E, Aydos MM, Ture DA, Ustundag Y.

Aging Male. 2019 Dec;22(4):266-271. doi: 10.1080/13685538.2018.1447558. Epub 2018 Mar 7.

PMID:
29513058
7.

On the Race to Starvation: How Do Bacteria Survive High Doses of Antibiotics?

Tamer YT, Toprak E.

Mol Cell. 2017 Dec 21;68(6):1019-1021. doi: 10.1016/j.molcel.2017.12.004.

8.

Platelet-to-lymphocyte ratio: A new inflammatory marker for the diagnosis of preterm premature rupture of membranes.

Toprak E, Bozkurt M, Dinçgez Çakmak B, Özçimen EE, Silahlı M, Ender Yumru A, Çalışkan E.

J Turk Ger Gynecol Assoc. 2017 Sep 1;18(3):122-126. doi: 10.4274/jtgga.2017.0028.

9.

Fighting against evolution of antibiotic resistance by utilizing evolvable antimicrobial drugs.

Cansizoglu MF, Toprak E.

Curr Genet. 2017 Dec;63(6):973-976. doi: 10.1007/s00294-017-0703-x. Epub 2017 May 11. Review.

PMID:
28497241
10.

Increased substrate affinity in the Escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance.

Abdizadeh H, Tamer YT, Acar O, Toprak E, Atilgan AR, Atilgan C.

Phys Chem Chem Phys. 2017 May 10;19(18):11416-11428. doi: 10.1039/c7cp01458a.

PMID:
28422217
11.

Sequence-Specific Targeting of Bacterial Resistance Genes Increases Antibiotic Efficacy.

Ayhan DH, Tamer YT, Akbar M, Bailey SM, Wong M, Daly SM, Greenberg DE, Toprak E.

PLoS Biol. 2016 Sep 15;14(9):e1002552. doi: 10.1371/journal.pbio.1002552. eCollection 2016 Sep.

12.

Corrigendum: Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells.

Okumus B, Landgraf D, Lai GC, Bakshi S, Arias-Castro JC, Yildiz S, Huh D, Fernandez-Lopez R, Peterson CN, Toprak E, El Karoui M, Paulsson J.

Nat Commun. 2016 Jun 24;7:12130. doi: 10.1038/ncomms12130. No abstract available.

13.

Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells.

Okumus B, Landgraf D, Lai GC, Bakshi S, Arias-Castro JC, Yildiz S, Huh D, Fernandez-Lopez R, Peterson CN, Toprak E, El Karoui M, Paulsson J.

Nat Commun. 2016 May 18;7:11641. doi: 10.1038/ncomms11641. Erratum in: Nat Commun. 2016 Jun 24;7:12130. Bakhsi, Somenath [corrected to Bakshi, Somenath].

14.

Does the Presence of Endometrial Polyp Predict Colorectal Polyp?

Unler GK, Gokturk HS, Toprak E, Erinanc OH, Korkmaz H.

Am J Med Sci. 2016 Feb;351(2):129-32. doi: 10.1016/j.amjms.2015.11.006.

PMID:
26897266
15.

Management and outcome of topical beta-blocker-induced atrioventricular block.

Özcan KS, Güngör B, Osmonov D, Tekkeşin AI, Altay S, Ekmekçi A, Toprak E, Yildirim E, Çalik N, Alper AT, Gürkan K, Erdinler I.

Cardiovasc J Afr. 2015 Nov-Dec;26(6):210-3. doi: 10.5830/CVJA-2015-030.

16.

Quantifying the Determinants of Evolutionary Dynamics Leading to Drug Resistance.

Chevereau G, Dravecká M, Batur T, Guvenek A, Ayhan DH, Toprak E, Bollenbach T.

PLoS Biol. 2015 Nov 18;13(11):e1002299. doi: 10.1371/journal.pbio.1002299. eCollection 2015.

17.

Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes.

Palmer AC, Toprak E, Baym M, Kim S, Veres A, Bershtein S, Kishony R.

Nat Commun. 2015 Jun 10;6:7385. doi: 10.1038/ncomms8385.

18.

A new technique for the removal of a transmigrated intrauterine device with rectum penetration.

Toprak E, Göktürk HS, Tolu A.

Turk J Gastroenterol. 2015 Jan;26(1):82-4. doi: 10.5152/tjg.2015.5050. No abstract available.

19.

Impaired coronary microvascular function and increased intima-media thickness in preeclampsia.

Ciftci FC, Caliskan M, Ciftci O, Gullu H, Uckuyu A, Toprak E, Yanik F.

J Am Soc Hypertens. 2014 Nov;8(11):820-6. doi: 10.1016/j.jash.2014.08.012. Epub 2014 Aug 21.

PMID:
25455007
20.

Strength of selection pressure is an important parameter contributing to the complexity of antibiotic resistance evolution.

Oz T, Guvenek A, Yildiz S, Karaboga E, Tamer YT, Mumcuyan N, Ozan VB, Senturk GH, Cokol M, Yeh P, Toprak E.

Mol Biol Evol. 2014 Sep;31(9):2387-401. doi: 10.1093/molbev/msu191. Epub 2014 Jun 24.

21.

Red cell distribution width is increased in patients with ascending aortic dilatation.

Güngör B, Ozcan KS, Ozpamuk Karadeniz F, Uluganyan M, Ekmekçi A, Alper AT, Osmonov D, Karataş B, Toprak E, Erdinler IC, Bolca O.

Turk Kardiyol Dern Ars. 2014 Apr;42(3):227-35. doi: 10.5543/tkda.2014.77508.

22.

Is left ventricular diastolic dysfunction independent from presence of hypertension in metabolic syndrome? An echocardiographic study.

Aksoy S, Durmuş G, Özcan S, Toprak E, Gurkan U, Oz D, Canga Y, Karatas B, Duman D.

J Cardiol. 2014 Sep;64(3):194-8. doi: 10.1016/j.jjcc.2014.01.002. Epub 2014 Feb 10.

23.

Fluidic and microfluidic tools for quantitative systems biology.

Okumus B, Yildiz S, Toprak E.

Curr Opin Biotechnol. 2014 Feb;25:30-8. doi: 10.1016/j.copbio.2013.08.016. Epub 2013 Sep 14. Review.

PMID:
24484878
24.

The relationship between endothelial nitric oxide synthase 4a/4b gene polymorphism and premature coronary artery disease.

Ekmekçi A, Ozcan KS, Güngör B, Abaci N, Osmonov D, Zencirci A, Toprak E, Dönmez C, Ustek D, Güleç C, Eren M.

Acta Cardiol. 2013 Oct;68(5):464-8.

PMID:
24283106
25.

Sick euthyroid syndrome is associated with poor prognosis in patients with ST segment elevation myocardial infarction undergoing primary percutaneous intervention.

Özcan KS, Osmonov D, Toprak E, Güngör B, Tatlısu A, Ekmekçi A, Kaya A, Tayyareci G, Erdinler İ.

Cardiol J. 2014;21(3):238-44. doi: 10.5603/CJ.a2013.0108. Epub 2013 Aug 30.

PMID:
23990180
26.

Elevated levels of RDW is associated with non-valvular atrial fibrillation.

Güngör B, Özcan KS, Erdinler İ, Ekmekçi A, Alper AT, Osmonov D, Çalık N, Akyuz S, Toprak E, Yılmaz H, Yıldırım A, Bolca O.

J Thromb Thrombolysis. 2014 May;37(4):404-10. doi: 10.1007/s11239-013-0957-1.

PMID:
23821044
27.

Phenotypic subgroups of polycystic ovary syndrome have different intra-renal resistance symptoms.

Ciftci CF, Uckuyu A, Karadeli E, Turhan E, Toprak E, Ozcimen EE.

Ginekol Pol. 2012 Dec;83(12):910-5.

PMID:
23488293
28.

The relationship between coronary artery ectasia and eNOS intron 4a/b gene polymorphisms.

Ekmekçi A, Ozcan KS, Abaci N, Güngör B, Osmonov D, Tosu R, Toprak E, Güleç C, Ustek D, Oz D, Eren M.

Acta Cardiol. 2013 Feb;68(1):19-22.

PMID:
23457905
29.

Building a morbidostat: an automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition.

Toprak E, Veres A, Yildiz S, Pedraza JM, Chait R, Paulsson J, Kishony R.

Nat Protoc. 2013 Mar;8(3):555-67. doi: 10.1038/nprot.nprot.2013.021. Epub 2013 Feb 21.

30.

A cross sectional observational study on the influence of chronic obstructive pulmonary disease on activities of daily living: the COPD-Life study.

Polatlı M, Bilgin C, Şaylan B, Başlılar Ş, Toprak E, Ergen H, Bakan ND, Kart L, Kılıç Z, Üstünel A, Şengün A, Varol Y, Yılmaz A, Ataol Ç, Bulgur D, Bozdoğan S, Tunaboyu İ, Özkan ZG, Uysal E, Gülgösteren S, Akın N, Selim Y, Irmak M, Turgut E, Keskin O, Bektaş Uysal H, Sofuoğlu N, Yılmaz M; COPD-Life Study Group.

Tuberk Toraks. 2012;60(1):1-12.

31.

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection.

Toprak E, Veres A, Michel JB, Chait R, Hartl DL, Kishony R.

Nat Genet. 2011 Dec 18;44(1):101-5. doi: 10.1038/ng.1034.

32.
33.

Effect of controlled ovarian hyperstimulation treatment on cardiac function.

Uckuyu A, Ciftci CF, Ozcimen EE, Ciftci O, Toprak E, Turhan E.

J Reprod Med. 2010 Nov-Dec;55(11-12):503-8.

PMID:
21291037
34.

Indirect hernial sac containing the uterus, ovary, and fallopian tube in association with a giant intraabdominal lipoma: report of a case.

Turk E, Karagulle E, Oguz H, Toprak E.

Hernia. 2012 Oct;16(5):593-5. doi: 10.1007/s10029-011-0790-4. Epub 2011 Jan 26.

PMID:
21267614
35.

Super-accuracy and super-resolution getting around the diffraction limit.

Toprak E, Kural C, Selvin PR.

Methods Enzymol. 2010;475:1-26. doi: 10.1016/S0076-6879(10)75001-1.

PMID:
20627151
36.

Myosin VI undergoes a 180 degrees power stroke implying an uncoupling of the front lever arm.

Reifenberger JG, Toprak E, Kim H, Safer D, Sweeney HL, Selvin PR.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18255-60. doi: 10.1073/pnas.0900005106. Epub 2009 Oct 14.

37.

Why kinesin is so processive.

Toprak E, Yildiz A, Hoffman MT, Rosenfeld SS, Selvin PR.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12717-22. doi: 10.1073/pnas.0808396106. Epub 2009 Jul 15.

38.

Salmonella typhimurium outbreak in a neonatal unit in Turkey.

Anil M, Helvaci M, Ozkalay N, Toprak E, Anil AB, Dilek M, Agus N.

Indian J Pediatr. 2009 Jun;76(6):629-33. doi: 10.1007/s12098-009-0083-4. Epub 2009 Apr 23.

PMID:
19418032
39.

Single-molecule fluorescence to study molecular motors.

Park H, Toprak E, Selvin PR.

Q Rev Biophys. 2007 Feb;40(1):87-111. Epub 2007 Jul 31. Review.

PMID:
17666122
40.

Three-dimensional particle tracking via bifocal imaging.

Toprak E, Balci H, Blehm BH, Selvin PR.

Nano Lett. 2007 Jul;7(7):2043-5. Epub 2007 Jun 21. Review.

PMID:
17583964
41.

New fluorescent tools for watching nanometer-scale conformational changes of single molecules.

Toprak E, Selvin PR.

Annu Rev Biophys Biomol Struct. 2007;36:349-69. Review.

PMID:
17298239
42.

Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.top27. doi: 10.1101/pdb.top27.

PMID:
21356960
43.

Fluorescence Imaging with One-Nanometer Accuracy (FIONA) of Cy3-DNA under Deoxygenation Conditions.

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.prot4868. doi: 10.1101/pdb.prot4868.

PMID:
21356956
44.

Constructing Sample Chambers for Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.prot4867. doi: 10.1101/pdb.prot4867.

PMID:
21356955
45.

Data Analysis Methods for Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.ip46. doi: 10.1101/pdb.ip46.

PMID:
21356943
46.

Equipment Setup for Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.ip45. doi: 10.1101/pdb.ip45.

PMID:
21356942
47.

Polarization effect on position accuracy of fluorophore localization.

Enderlein J, Toprak E, Selvin PR.

Opt Express. 2006 Sep 4;14(18):8111-20.

PMID:
19529183
48.

Arsenic trioxide exposure to ovarian carcinoma cells leads to decreased level of topoisomerase II and cytotoxicity.

Askar N, Cirpan T, Toprak E, Karabulut B, Selvi N, Terek MC, Uslu R, Sanli UA, Goker E.

Int J Gynecol Cancer. 2006 Jul-Aug;16(4):1552-6.

PMID:
16884364
49.

Defocused orientation and position imaging (DOPI) of myosin V.

Toprak E, Enderlein J, Syed S, McKinney SA, Petschek RG, Ha T, Goldman YE, Selvin PR.

Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6495-9. Epub 2006 Apr 13.

50.

Effects of extended-wear soft contact lenses on the ocular surface and central corneal thickness.

Gürdal C, Aydin S, Kirimlioğlu H, Toprak E, Sengör T.

Ophthalmologica. 2003 Sep-Oct;217(5):329-36.

PMID:
12913322

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