Sort by
Items per page

Send to

Choose Destination

Search results

Items: 28


Characterizing 3D inflorescence architecture in grapevine using X-ray imaging and advanced morphometrics: implications for understanding cluster density.

Li M, Klein LL, Duncan KE, Jiang N, Chitwood DH, Londo JP, Miller AJ, Topp CN.

J Exp Bot. 2019 Nov 18;70(21):6261-6276. doi: 10.1093/jxb/erz394.


TRANSPORTER OF IBA1 Links Auxin and Cytokinin to Influence Root Architecture.

Michniewicz M, Ho CH, Enders TA, Floro E, Damodaran S, Gunther LK, Powers SK, Frick EM, Topp CN, Frommer WB, Strader LC.

Dev Cell. 2019 Sep 9;50(5):599-609.e4. doi: 10.1016/j.devcel.2019.06.010. Epub 2019 Jul 18.


Three-Dimensional Time-Lapse Analysis Reveals Multiscale Relationships in Maize Root Systems with Contrasting Architectures.

Jiang N, Floro E, Bray AL, Laws B, Duncan KE, Topp CN.

Plant Cell. 2019 Aug;31(8):1708-1722. doi: 10.1105/tpc.19.00015. Epub 2019 May 23.


Convergent evolution of root system architecture in two independently evolved lineages of weedy rice.

Wedger MJ, Topp CN, Olsen KM.

New Phytol. 2019 Jul;223(2):1031-1042. doi: 10.1111/nph.15791. Epub 2019 Apr 10.


The Quantitative Genetic Control of Root Architecture in Maize.

Bray AL, Topp CN.

Plant Cell Physiol. 2018 Oct 1;59(10):1919-1930. doi: 10.1093/pcp/pcy141.


Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace.

Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH.

Front Plant Sci. 2018 Apr 25;9:553. doi: 10.3389/fpls.2018.00553. eCollection 2018.


The Persistent Homology Mathematical Framework Provides Enhanced Genotype-to-Phenotype Associations for Plant Morphology.

Li M, Frank MH, Coneva V, Mio W, Chitwood DH, Topp CN.

Plant Physiol. 2018 Aug;177(4):1382-1395. doi: 10.1104/pp.18.00104. Epub 2018 Jun 5.


archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems.

Delory BM, Li M, Topp CN, Lobet G.

F1000Res. 2018 Jan 8;7:22. doi: 10.12688/f1000research.13541.1. eCollection 2018.


Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences.

Bucksch A, Atta-Boateng A, Azihou AF, Battogtokh D, Baumgartner A, Binder BM, Braybrook SA, Chang C, Coneva V, DeWitt TJ, Fletcher AG, Gehan MA, Diaz-Martinez DH, Hong L, Iyer-Pascuzzi AS, Klein LL, Leiboff S, Li M, Lynch JP, Maizel A, Maloof JN, Markelz RJC, Martinez CC, Miller LA, Mio W, Palubicki W, Poorter H, Pradal C, Price CA, Puttonen E, Reese JB, Rellán-Álvarez R, Spalding EP, Sparks EE, Topp CN, Williams JH, Chitwood DH.

Front Plant Sci. 2017 Jun 9;8:900. doi: 10.3389/fpls.2017.00900. eCollection 2017. Review.


Persistent homology and the branching topologies of plants.

Li M, Duncan K, Topp CN, Chitwood DH.

Am J Bot. 2017 Mar;104(3):349-353. doi: 10.3732/ajb.1700046. Epub 2017 Mar 24. No abstract available.


Whole-Plant Manual and Image-Based Phenotyping in Controlled Environments.

Agnew E, Bray A, Floro E, Ellis N, Gierer J, Lizárraga C, O'Brien D, Wiechert M, Mockler TC, Shakoor N, Topp CN.

Curr Protoc Plant Biol. 2017 Mar;2(1):1-21. doi: 10.1002/cppb.20044.


Hope in Change: The Role of Root Plasticity in Crop Yield Stability.

Topp CN.

Plant Physiol. 2016 Sep;172(1):5-6. doi: 10.1104/pp.16.01257. No abstract available.


The Quest for Understanding Phenotypic Variation via Integrated Approaches in the Field Environment.

Pauli D, Chapman SC, Bart R, Topp CN, Lawrence-Dill CJ, Poland J, Gore MA.

Plant Physiol. 2016 Oct;172(2):622-634. Epub 2016 Aug 1. Review. No abstract available.


How can we harness quantitative genetic variation in crop root systems for agricultural improvement?

Topp CN, Bray AL, Ellis NA, Liu Z.

J Integr Plant Biol. 2016 Mar;58(3):213-25. doi: 10.1111/jipb.12470. Epub 2016 Mar 11. Review.


Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics.

Das A, Schneider H, Burridge J, Ascanio AK, Wojciechowski T, Topp CN, Lynch JP, Weitz JS, Bucksch A.

Plant Methods. 2015 Nov 2;11:51. doi: 10.1186/s13007-015-0093-3. eCollection 2015.


DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots.

Symonova O, Topp CN, Edelsbrunner H.

PLoS One. 2015 Jun 1;10(6):e0127657. doi: 10.1371/journal.pone.0127657. eCollection 2015.


Quantitative trait locus mapping reveals regions of the maize genome controlling root system architecture.

Zurek PR, Topp CN, Benfey PN.

Plant Physiol. 2015 Apr;167(4):1487-96. doi: 10.1104/pp.114.251751. Epub 2015 Feb 11.


Revealing plant cryptotypes: defining meaningful phenotypes among infinite traits.

Chitwood DH, Topp CN.

Curr Opin Plant Biol. 2015 Apr;24:54-60. doi: 10.1016/j.pbi.2015.01.009. Epub 2015 Feb 3. Review.


3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.

Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Zurek PR, Symonova O, Zheng Y, Bucksch A, Mileyko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, Benfey PN.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):E1695-704. doi: 10.1073/pnas.1304354110. Epub 2013 Apr 11.


GiA Roots: software for the high throughput analysis of plant root system architecture.

Galkovskyi T, Mileyko Y, Bucksch A, Moore B, Symonova O, Price CA, Topp CN, Iyer-Pascuzzi AS, Zurek PR, Fang S, Harer J, Benfey PN, Weitz JS.

BMC Plant Biol. 2012 Jul 26;12:116. doi: 10.1186/1471-2229-12-116.


Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning.

Gent JI, Schneider KL, Topp CN, Rodriguez C, Presting GG, Dawe RK.

Epigenetics Chromatin. 2011 Feb 25;4:3. doi: 10.1186/1756-8935-4-3.


DNA binding of centromere protein C (CENPC) is stabilized by single-stranded RNA.

Du Y, Topp CN, Dawe RK.

PLoS Genet. 2010 Feb 5;6(2):e1000835. doi: 10.1371/journal.pgen.1000835.


Identification of a maize neocentromere in an oat-maize addition line.

Topp CN, Okagaki RJ, Melo JR, Kynast RG, Phillips RL, Dawe RK.

Cytogenet Genome Res. 2009;124(3-4):228-38. doi: 10.1159/000218128. Epub 2009 Jun 25.


Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z.

Deal RB, Topp CN, McKinney EC, Meagher RB.

Plant Cell. 2007 Jan;19(1):74-83. Epub 2007 Jan 12.


Transformation of rice with long DNA-segments consisting of random genomic DNA or centromere-specific DNA.

Phan BH, Jin W, Topp CN, Zhong CX, Jiang J, Dawe RK, Parrott WA.

Transgenic Res. 2007 Jun;16(3):341-51. Epub 2006 Nov 14.


Reinterpreting pericentromeric heterochromatin.

Topp CN, Dawe RK.

Curr Opin Plant Biol. 2006 Dec;9(6):647-53. Epub 2006 Oct 2. Review.


Centromere-encoded RNAs are integral components of the maize kinetochore.

Topp CN, Zhong CX, Dawe RK.

Proc Natl Acad Sci U S A. 2004 Nov 9;101(45):15986-91. Epub 2004 Oct 28.


Integration of the gene for carboxin resistance does not impact the Ustilago maydis-maize interaction.

Topp CN, Ruiz-Herrera J, Martínez-Espinoza AD, Gold SE.

Curr Microbiol. 2002 Jan;44(1):67-70.


Supplemental Content

Support Center