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Items: 24

1.

Genome-wide analysis of the human malaria parasite Plasmodium falciparum transcription factor PfNF-YB shows interaction with a CCAAT motif.

Lima WR, Martins DC, Parreira KS, Scarpelli P, Santos de Moraes M, Topalis P, Hashimoto RF, Garcia CRS.

Oncotarget. 2017 Dec 9;8(69):113987-114001. doi: 10.18632/oncotarget.23053. eCollection 2017 Dec 26.

2.

Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution.

Chen XG, Jiang X, Gu J, Xu M, Wu Y, Deng Y, Zhang C, Bonizzoni M, Dermauw W, Vontas J, Armbruster P, Huang X, Yang Y, Zhang H, He W, Peng H, Liu Y, Wu K, Chen J, Lirakis M, Topalis P, Van Leeuwen T, Hall AB, Jiang X, Thorpe C, Mueller RL, Sun C, Waterhouse RM, Yan G, Tu ZJ, Fang X, James AA.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E5907-15. doi: 10.1073/pnas.1516410112. Epub 2015 Oct 19. Erratum in: Proc Natl Acad Sci U S A. 2016 Jan 26;113(4):E489.

3.

A draft genome sequence of an invasive mosquito: an Italian Aedes albopictus.

Dritsou V, Topalis P, Windbichler N, Simoni A, Hall A, Lawson D, Hinsley M, Hughes D, Napolioni V, Crucianelli F, Deligianni E, Gasperi G, Gomulski LM, Savini G, Manni M, Scolari F, Malacrida AR, Arcà B, Ribeiro JM, Lombardo F, Saccone G, Salvemini M, Moretti R, Aprea G, Calvitti M, Picciolini M, Papathanos PA, Spaccapelo R, Favia G, Crisanti A, Louis C.

Pathog Glob Health. 2015 Jul;109(5):207-20. doi: 10.1179/2047773215Y.0000000031. Epub 2015 Sep 14.

4.

Describing the breakbone fever: IDODEN, an ontology for dengue fever.

Mitraka E, Topalis P, Dritsou V, Dialynas E, Louis C.

PLoS Negl Trop Dis. 2015 Feb 3;9(2):e0003479. doi: 10.1371/journal.pntd.0003479. eCollection 2015 Feb.

5.

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, Besansky NJ.

Science. 2015 Jan 2;347(6217):1258522. doi: 10.1126/science.1258522. Epub 2014 Nov 27.

6.

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases.

Giraldo-Calderón GI, Emrich SJ, MacCallum RM, Maslen G, Dialynas E, Topalis P, Ho N, Gesing S; VectorBase Consortium, Madey G, Collins FH, Lawson D.

Nucleic Acids Res. 2015 Jan;43(Database issue):D707-13. doi: 10.1093/nar/gku1117. Epub 2014 Dec 15.

7.

Non-coding RNA gene families in the genomes of anopheline mosquitoes.

Dritsou V, Deligianni E, Dialynas E, Allen J, Poulakakis N, Louis C, Lawson D, Topalis P.

BMC Genomics. 2014 Nov 28;15:1038. doi: 10.1186/1471-2164-15-1038.

8.

IDOMAL: the malaria ontology revisited.

Topalis P, Mitraka E, Dritsou V, Dialynas E, Louis C.

J Biomed Semantics. 2013 Sep 13;4(1):16. doi: 10.1186/2041-1480-4-16.

9.

The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.

Parikh PP, Zheng J, Logan-Klumpler F, Stoeckert CJ Jr, Louis C, Topalis P, Protasio AV, Sheth AP, Carrington M, Berriman M, Sahoo SS.

J Biomed Semantics. 2012 May 23;3(1):5. doi: 10.1186/2041-1480-3-5.

10.

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.

Megy K, Emrich SJ, Lawson D, Campbell D, Dialynas E, Hughes DS, Koscielny G, Louis C, Maccallum RM, Redmond SN, Sheehan A, Topalis P, Wilson D; VectorBase Consortium.

Nucleic Acids Res. 2012 Jan;40(Database issue):D729-34. doi: 10.1093/nar/gkr1089. Epub 2011 Dec 1.

11.

IDOMAL: an ontology for malaria.

Topalis P, Mitraka E, Bujila I, Deligianni E, Dialynas E, Siden-Kiamos I, Troye-Blomberg M, Louis C.

Malar J. 2010 Aug 10;9:230. doi: 10.1186/1475-2875-9-230.

12.

A set of ontologies to drive tools for the control of vector-borne diseases.

Topalis P, Dialynas E, Mitraka E, Deligianni E, Siden-Kiamos I, Louis C.

J Biomed Inform. 2011 Feb;44(1):42-7. doi: 10.1016/j.jbi.2010.03.012. Epub 2010 Apr 2.

13.

MIRO and IRbase: IT tools for the epidemiological monitoring of insecticide resistance in mosquito disease vectors.

Dialynas E, Topalis P, Vontas J, Louis C.

PLoS Negl Trop Dis. 2009 Jun 23;3(6):e465. doi: 10.1371/journal.pntd.0000465.

14.

VectorBase: a data resource for invertebrate vector genomics.

Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Hammond M, Hill CA, Konopinski N, Lobo NF, MacCallum RM, Madey G, Megy K, Meyer J, Redmond S, Severson DW, Stinson EO, Topalis P, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH.

Nucleic Acids Res. 2009 Jan;37(Database issue):D583-7. doi: 10.1093/nar/gkn857. Epub 2008 Nov 21.

15.

How can ontologies help vector biology?

Topalis P, Lawson D, Collins FH, Louis C.

Trends Parasitol. 2008 Jun;24(6):249-52. doi: 10.1016/j.pt.2008.03.002. Epub 2008 Apr 24.

PMID:
18440275
16.

Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase.

Topalis P, Tzavlaki C, Vestaki K, Dialynas E, Sonenshine DE, Butler R, Bruggner RV, Stinson EO, Collins FH, Louis C.

Insect Mol Biol. 2008 Feb;17(1):87-9. doi: 10.1111/j.1365-2583.2008.00781.x.

PMID:
18237287
17.

VectorBase: a home for invertebrate vectors of human pathogens.

Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Emmert D, Hammond M, Hill CA, Kennedy RC, Lobo NF, MacCallum MR, Madey G, Megy K, Redmond S, Russo S, Severson DW, Stinson EO, Topalis P, Zdobnov EM, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH.

Nucleic Acids Res. 2007 Jan;35(Database issue):D503-5. Epub 2006 Dec 1.

18.

Biochemical, molecular, and functional characterization of PISCF-allatostatin, a regulator of juvenile hormone biosynthesis in the mosquito Aedes aegypti.

Li Y, Hernandez-Martinez S, Fernandez F, Mayoral JG, Topalis P, Priestap H, Perez M, Navare A, Noriega FG.

J Biol Chem. 2006 Nov 10;281(45):34048-55. Epub 2006 Sep 12.

19.

AnoBase: a genetic and biological database of anophelines.

Topalis P, Koutsos A, Dialynas E, Kiamos C, Hope LK, Strode C, Hemingway J, Louis C.

Insect Mol Biol. 2005 Dec;14(6):591-7.

PMID:
16313559
20.

AnoXcel: an Anopheles gambiae protein database.

Ribeiro JM, Topalis P, Louis C.

Insect Mol Biol. 2004 Oct;13(5):449-57.

PMID:
15373803
21.

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster.

Zdobnov EM, von Mering C, Letunic I, Torrents D, Suyama M, Copley RR, Christophides GK, Thomasova D, Holt RA, Subramanian GM, Mueller HM, Dimopoulos G, Law JH, Wells MA, Birney E, Charlab R, Halpern AL, Kokoza E, Kraft CL, Lai Z, Lewis S, Louis C, Barillas-Mury C, Nusskern D, Rubin GM, Salzberg SL, Sutton GG, Topalis P, Wides R, Wincker P, Yandell M, Collins FH, Ribeiro J, Gelbart WM, Kafatos FC, Bork P.

Science. 2002 Oct 4;298(5591):149-59.

22.

The genome sequence of the malaria mosquito Anopheles gambiae.

Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O'Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL.

Science. 2002 Oct 4;298(5591):129-49.

23.

A comparative genomic analysis of two distant diptera, the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae.

Bolshakov VN, Topalis P, Blass C, Kokoza E, della Torre A, Kafatos FC, Louis C.

Genome Res. 2002 Jan;12(1):57-66.

24.

One-hundred and five new potential Drosophila melanogaster genes revealed through STS analysis.

Louis C, Madueño E, Modolell J, Omar MM, Papagiannakis G, Saunders RD, Savakis C, Sidén-Kiamos I, Spanos L, Topalis P, Zhang YQ, Ashburner M, Benos P, Bolshakov VN, Deak P, Glover DM, Herrmann S, Kafatos FC.

Gene. 1997 Aug 22;195(2):187-93.

PMID:
9305763

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