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Items: 10

1.

What can we do with 1000 plastid genomes?

Tonti-Filippini J, Nevill PG, Dixon K, Small I.

Plant J. 2017 May;90(4):808-818. doi: 10.1111/tpj.13491. Epub 2017 Mar 30.

2.

STAR: an integrated solution to management and visualization of sequencing data.

Wang T, Liu J, Shen L, Tonti-Filippini J, Zhu Y, Jia H, Lister R, Whitaker JW, Ecker JR, Millar AH, Ren B, Wang W.

Bioinformatics. 2013 Dec 15;29(24):3204-10. doi: 10.1093/bioinformatics/btt558. Epub 2013 Sep 27.

3.

Global epigenomic reconfiguration during mammalian brain development.

Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR.

Science. 2013 Aug 9;341(6146):1237905. doi: 10.1126/science.1237905. Epub 2013 Jul 4.

4.

Human DNA methylomes at base resolution show widespread epigenomic differences.

Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR.

Nature. 2009 Nov 19;462(7271):315-22. doi: 10.1038/nature08514. Epub 2009 Oct 14.

5.

A link between RNA metabolism and silencing affecting Arabidopsis development.

Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR.

Dev Cell. 2008 Jun;14(6):854-66. doi: 10.1016/j.devcel.2008.04.005. Epub 2008 May 22.

6.

Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR.

Cell. 2008 May 2;133(3):523-36. doi: 10.1016/j.cell.2008.03.029.

7.

Characterization of the preprotein and amino acid transporter gene family in Arabidopsis.

Murcha MW, Elhafez D, Lister R, Tonti-Filippini J, Baumgartner M, Philippar K, Carrie C, Mokranjac D, Soll J, Whelan J.

Plant Physiol. 2007 Jan;143(1):199-212. Epub 2006 Nov 10.

8.

SUBA: the Arabidopsis Subcellular Database.

Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I, Millar AH.

Nucleic Acids Res. 2007 Jan;35(Database issue):D213-8. Epub 2006 Oct 28.

9.

Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis.

Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH.

Plant Physiol. 2005 Oct;139(2):598-609.

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