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Items: 1 to 50 of 72

1.

A novel clustering algorithm for time-series data based on precise correlation coefficient matching in the IoT.

Li HB, Tong JC.

Math Biosci Eng. 2019 Jul 19;16(6):6654-6671. doi: 10.3934/mbe.2019331.

2.

Helicid Ameliorates Learning and Cognitive Ability and Activities cAMP/PKA/CREB Signaling in Chronic Unpredictable Mild Stress Rats.

Li XY, Qi WW, Zhang YX, Jiang SY, Yang B, Xiong L, Tong JC.

Biol Pharm Bull. 2019;42(7):1146-1154. doi: 10.1248/bpb.b19-00012.

3.

Estimating Biological Age in the Singapore Longitudinal Aging Study.

Zhong X, Lu Y, Gao Q, Nyunt MSZ, Fulop T, Monterola CP, Tong JC, Larbi A, Ng TP.

J Gerontol A Biol Sci Med Sci. 2019 Jun 8. pii: glz146. doi: 10.1093/gerona/glz146. [Epub ahead of print]

PMID:
31179487
4.

Implementation and new insights in molecular diagnostics for HIV infection.

Tsang HF, Chan LW, Tong JC, Wong HT, Lai CK, Au TC, Chan AK, Ng LP, Cho WC, Wong SC.

Expert Rev Mol Diagn. 2018 May;18(5):433-441. doi: 10.1080/14737159.2018.1464393. Epub 2018 Apr 19. Review.

PMID:
29641941
5.

Airborne bacterial assemblage in a zero carbon building: A case study.

Leung MHY, Tong X, Tong JCK, Lee PKH.

Indoor Air. 2018 Jan;28(1):40-50. doi: 10.1111/ina.12410. Epub 2017 Aug 16.

PMID:
28767182
6.

Predicting Zoonotic Risk of Influenza A Viruses from Host Tropism Protein Signature Using Random Forest.

Eng CLP, Tong JC, Tan TW.

Int J Mol Sci. 2017 May 25;18(6). pii: E1135. doi: 10.3390/ijms18061135.

7.

Human cytomegalovirus may promote tumour progression by upregulating arginase-2.

Costa H, Xu X, Overbeek G, Vasaikar S, Patro CP, Kostopoulou ON, Jung M, Shafi G, Ananthaseshan S, Tsipras G, Davoudi B, Mohammad AA, Lam H, Strååt K, Wilhelmi V, Shang M, Tegner J, Tong JC, Wong KT, Söderberg-Naucler C, Yaiw KC.

Oncotarget. 2016 Jul 26;7(30):47221-47231. doi: 10.18632/oncotarget.9722.

8.

T-Cell Epitope Prediction of Chikungunya Virus.

Eng CL, Tan TW, Tong JC.

Methods Mol Biol. 2016;1426:201-7. doi: 10.1007/978-1-4939-3618-2_18.

PMID:
27233273
9.

Distinct Host Tropism Protein Signatures to Identify Possible Zoonotic Influenza A Viruses.

Eng CL, Tong JC, Tan TW.

PLoS One. 2016 Feb 25;11(2):e0150173. doi: 10.1371/journal.pone.0150173. eCollection 2016.

10.

Expression and clinical significance of Tiam1 gene in esophageal carcinoma.

Wu QY, Wang Y, Tong JC, Zhang M, Zhang K.

Int J Clin Exp Med. 2015 Nov 15;8(11):21229-34. eCollection 2015.

11.

Building MHC class II epitope predictor using machine learning approaches.

Eng LP, Tan TW, Tong JC.

Methods Mol Biol. 2015;1268:67-73. doi: 10.1007/978-1-4939-2285-7_4.

PMID:
25555721
12.

Predicting host tropism of influenza A virus proteins using random forest.

Eng CL, Tong JC, Tan TW.

BMC Med Genomics. 2014;7 Suppl 3:S1. doi: 10.1186/1755-8794-7-S3-S1. Epub 2014 Dec 8.

13.

Novel SNP improves differential survivability and mortality in non-small cell lung cancer patients.

Mah TL, Yap XN, Limviphuvadh V, Li N, Sridharan S, Kuralmani V, Feng M, Liem N, Adhikari S, Yong WP, Soo RA, Maurer-Stroh S, Eisenhaber F, Tong JC.

BMC Genomics. 2014;15 Suppl 9:S20. doi: 10.1186/1471-2164-15-S9-S20. Epub 2014 Dec 8.

14.

Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design.

Tong JC, Tan TW, Ranganathan S.

Methods Mol Biol. 2014;1184:503-11. doi: 10.1007/978-1-4939-1115-8_27.

PMID:
25048142
15.

mCare: using secure mobile technology to support soldier reintegration and rehabilitation.

Poropatich RK, Pavliscsak HH, Tong JC, Little JR, McVeigh FL.

Telemed J E Health. 2014 Jun;20(6):563-9. doi: 10.1089/tmj.2013.0226. Epub 2014 Mar 25.

PMID:
24666038
16.

Simple re-instantiation of small databases using cloud computing.

Tan TW, Xie C, De Silva M, Lim KS, Patro CP, Lim SJ, Govindarajan KR, Tong JC, Choo KH, Ranganathan S, Khan AM.

BMC Genomics. 2013;14 Suppl 5:S13. doi: 10.1186/1471-2164-14-S5-S13. Epub 2013 Oct 16.

17.

Clustering HLA class I superfamilies using structural interaction patterns.

Harjanto S, Ng LF, Tong JC.

PLoS One. 2014 Jan 27;9(1):e86655. doi: 10.1371/journal.pone.0086655. eCollection 2014.

18.

Comparison of parathyroid hormone (1-34) and elcatonin in postmenopausal women with osteoporosis: an 18-month randomized, multicenter controlled trial in China.

Li Y, Xuan M, Wang B, Yang J, Zhang H, Zhang XZ, Guo XH, Lü XF, Xue QY, Yang GY, Ji QH, Liu ZM, Li CJ, Wu TF, Sheng ZY, Li PQ, Tong JC.

Chin Med J (Engl). 2013 Feb;126(3):457-63.

PMID:
23422107
19.

HLA-E*0103X is associated with susceptibility to Pemphigus vulgaris.

Bhanusali DG, Sachdev A, Rahmanian A, Gerlach JA, Tong JC, Seiffert-Sinha K, Sinha AA.

Exp Dermatol. 2013 Feb;22(2):108-12. doi: 10.1111/exd.12077.

PMID:
23362868
20.

In silico prediction of the granzyme B degradome.

Wee LJ, Er EP, Ng LF, Tong JC.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S11.

21.

Early neutralizing IgG response to Chikungunya virus in infected patients targets a dominant linear epitope on the E2 glycoprotein.

Kam YW, Lum FM, Teo TH, Lee WW, Simarmata D, Harjanto S, Chua CL, Chan YF, Wee JK, Chow A, Lin RT, Leo YS, Le Grand R, Sam IC, Tong JC, Roques P, Wiesmüller KH, Rénia L, Rötzschke O, Ng LF.

EMBO Mol Med. 2012 Apr;4(4):330-43. doi: 10.1002/emmm.201200213. Epub 2012 Mar 5.

22.

Immunoinformatics: how in silico methods are re-shaping the investigation of peptide immune specificity.

Wee LJ, Lim SJ, Ng LF, Tong JC.

Front Biosci (Elite Ed). 2012 Jan 1;4:311-9. Review.

PMID:
22201873
23.

In silico design of small molecules.

Bernardo PH, Tong JC.

Methods Mol Biol. 2012;800:25-31. doi: 10.1007/978-1-61779-349-3_3. Review.

PMID:
21964780
24.

MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures.

Khan JM, Cheruku HR, Tong JC, Ranganathan S.

Bioinformatics. 2011 Apr 15;27(8):1192-3. doi: 10.1093/bioinformatics/btr104. Epub 2011 Feb 23.

PMID:
21349870
25.

Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi).

Tan TW, Tong JC, Khan AM, de Silva M, Lim KS, Ranganathan S.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S27. doi: 10.1186/1471-2164-11-S4-S27.

26.

SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction.

Wee LJ, Simarmata D, Kam YW, Ng LF, Tong JC.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S21. doi: 10.1186/1471-2164-11-S4-S21.

27.

CLEVER: A general design tool for combinatorial libraries.

Lam TH, Bernardo PH, Chai CL, Tong JC.

Methods Mol Biol. 2011;685:347-56. doi: 10.1007/978-1-60761-931-4_18.

PMID:
20981533
28.

[A randomized, multicenter, active-controlled trial to compare the efficacy of recombinant human parathyroid hormone (1-34) with that of elcatonin in postmenopausal women with osteoporosis in China].

Zhang XZ, Song LG, Wang B, Yang J, Li H, Xuan M, Lei T, Guo XH, Lü XF, Xue QY, Yang GY, Ji QH, Shen J, Liu ZM, Li CJ, Wu TF, Xie HB, Tong JC.

Zhonghua Nei Ke Za Zhi. 2010 Aug;49(8):662-6. Chinese.

PMID:
20979784
29.

Computational Epigenetics: the new scientific paradigm.

Lim SJ, Tan TW, Tong JC.

Bioinformation. 2010 Jan 23;4(7):331-7.

30.

Understanding infectious agents from an in silico perspective.

Tong JC, Ng LF.

Drug Discov Today. 2011 Jan;16(1-2):42-9. doi: 10.1016/j.drudis.2010.10.007. Epub 2010 Oct 23. Review.

PMID:
20974283
31.

TAP Hunter: a SVM-based system for predicting TAP ligands using local description of amino acid sequence.

Lam TH, Mamitsuka H, Ren EC, Tong JC.

Immunome Res. 2010 Sep 27;6 Suppl 1:S6. doi: 10.1186/1745-7580-6-S1-S6.

32.

HLA class I restriction as a possible driving force for Chikungunya evolution.

Tong JC, Simarmata D, Lin RT, Rénia L, Ng LF.

PLoS One. 2010 Feb 26;5(2):e9291. doi: 10.1371/journal.pone.0009291.

33.

Structural insights into the design of small molecule inhibitors that selectively antagonize Mcl-1.

Bernardo PH, Sivaraman T, Wan KF, Xu J, Krishnamoorthy J, Song CM, Tian L, Chin JS, Lim DS, Mok HY, Yu VC, Tong JC, Chai CL.

J Med Chem. 2010 Mar 11;53(5):2314-8. doi: 10.1021/jm901469p.

PMID:
20158203
34.

A multi-factor model for caspase degradome prediction.

Wee LJ, Tong JC, Tan TW, Ranganathan S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S6. doi: 10.1186/1471-2164-10-S3-S6.

35.

Extending Asia Pacific bioinformatics into new realms in the "-omics" era.

Ranganathan S, Eisenhaber F, Tong JC, Tan TW.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S1. doi: 10.1186/1471-2164-10-S3-S1.

36.

Immuno-biology of Chikungunya and implications for disease intervention.

Kam YW, Ong EK, Rénia L, Tong JC, Ng LF.

Microbes Infect. 2009 Dec;11(14-15):1186-96. doi: 10.1016/j.micinf.2009.09.003. Epub 2009 Sep 6. Review.

PMID:
19737625
37.

AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins.

Muh HC, Tong JC, Tammi MT.

PLoS One. 2009 Jun 10;4(6):e5861. doi: 10.1371/journal.pone.0005861.

38.

Recent advances in computer-aided drug design.

Song CM, Lim SJ, Tong JC.

Brief Bioinform. 2009 Sep;10(5):579-91. doi: 10.1093/bib/bbp023. Epub 2009 May 11. Review.

PMID:
19433475
39.

Immunoinformatics: current trends and future directions.

Tong JC, Ren EC.

Drug Discov Today. 2009 Jul;14(13-14):684-9. doi: 10.1016/j.drudis.2009.04.001. Epub 2009 Apr 18. Review.

PMID:
19379830
40.

BEID: database for sequence-structure-function information on antigen-antibody interactions.

Tong JC, Song CM, Tan PT, Ren EC, Sinha AA.

Bioinformation. 2008;3(2):58-60. Epub 2008 Oct 13.

41.

Allergen Atlas: a comprehensive knowledge center and analysis resource for allergen information.

Tong JC, Lim SJ, Muh HC, Chew FT, Tammi MT.

Bioinformatics. 2009 Apr 1;25(7):979-80. doi: 10.1093/bioinformatics/btp077. Epub 2009 Feb 11.

42.

The value of position-specific scoring matrices for assessment of protein allegenicity.

Lim SJ, Tong JC, Chew FT, Tammi MT.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S21. doi: 10.1186/1471-2105-9-S12-S21.

43.

CLEVER: pipeline for designing in silico chemical libraries.

Song CM, Bernardo PH, Chai CL, Tong JC.

J Mol Graph Model. 2009 Jan;27(5):578-83. doi: 10.1016/j.jmgm.2008.09.009. Epub 2008 Sep 26.

PMID:
18986817
44.
45.

Prediction of protein allergenicity using local description of amino acid sequence.

Tong JC, Tammi MT.

Front Biosci. 2008 May 1;13:6072-8.

PMID:
18508644
46.

Methods and protocols for the assessment of protein allergenicity and cross-reactivity.

Tong JC, Tammi MT.

Front Biosci. 2008 May 1;13:4882-8. Review.

PMID:
18508553
47.

A practical guide to structure-based prediction of MHC-binding peptides.

Ranganathan S, Tong JC.

Methods Mol Biol. 2007;409:301-8. doi: 10.1007/978-1-60327-118-9_22.

PMID:
18450010
48.

Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage.

Choo KH, Tong JC, Ranganathan S.

BMC Bioinformatics. 2008;9 Suppl 1:S15. doi: 10.1186/1471-2105-9-S1-S15.

49.

Functional and structural implications of the complement factor H Y402H polymorphism associated with age-related macular degeneration.

Ormsby RJ, Ranganathan S, Tong JC, Griggs KM, Dimasi DP, Hewitt AW, Burdon KP, Craig JE, Hoh J, Gordon DL.

Invest Ophthalmol Vis Sci. 2008 May;49(5):1763-70. doi: 10.1167/iovs.07-1297. Epub 2008 Feb 8.

PMID:
18263814
50.

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