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Items: 1 to 50 of 212

1.

Cell-free synthesis of stable isotope-labeled internal standards for targeted quantitative proteomics.

Narumi R, Masuda K, Tomonaga T, Adachi J, Ueda HR, Shimizu Y.

Synth Syst Biotechnol. 2018 Feb 21;3(2):97-104. doi: 10.1016/j.synbio.2018.02.004. eCollection 2018 Jun. Review.

2.

Potential role of extracellular vesicle-mediated antigen presentation in Helicobacter pylori hypersensitivity during eradication therapy.

Ito T, Shiromizu T, Ohnishi S, Suzuki S, Mabe K, Hasegawa A, Ujiie H, Fujita Y, Sato Y, Terai S, Kato M, Asaka M, Tomonaga T, Shimizu H, Abe R.

J Allergy Clin Immunol. 2018 Apr 11. pii: S0091-6749(18)30513-X. doi: 10.1016/j.jaci.2018.02.046. [Epub ahead of print] No abstract available.

PMID:
29653117
3.

Biopersistence of NiO and TiO₂ Nanoparticles Following Intratracheal Instillation and Inhalation.

Oyabu T, Myojo T, Lee BW, Okada T, Izumi H, Yoshiura Y, Tomonaga T, Li YS, Kawai K, Shimada M, Kubo M, Yamamoto K, Kawaguchi K, Sasaki T, Morimoto Y.

Int J Mol Sci. 2017 Dec 19;18(12). pii: E2757. doi: 10.3390/ijms18122757.

4.

Quantitation of putative colorectal cancer biomarker candidates in serum extracellular vesicles by targeted proteomics.

Shiromizu T, Kume H, Ishida M, Adachi J, Kano M, Matsubara H, Tomonaga T.

Sci Rep. 2017 Oct 6;7(1):12782. doi: 10.1038/s41598-017-13092-x.

5.

Fibroblast growth factor 2 (FGF2) regulates cytoglobin expression and activation of human hepatic stellate cells via JNK signaling.

Sato-Matsubara M, Matsubara T, Daikoku A, Okina Y, Longato L, Rombouts K, Thuy LTT, Adachi J, Tomonaga T, Ikeda K, Yoshizato K, Pinzani M, Kawada N.

J Biol Chem. 2017 Nov 17;292(46):18961-18972. doi: 10.1074/jbc.M117.793794. Epub 2017 Sep 15.

6.

Deep Phospho- and Phosphotyrosine Proteomics Identified Active Kinases and Phosphorylation Networks in Colorectal Cancer Cell Lines Resistant to Cetuximab.

Abe Y, Nagano M, Kuga T, Tada A, Isoyama J, Adachi J, Tomonaga T.

Sci Rep. 2017 Sep 5;7(1):10463. doi: 10.1038/s41598-017-10478-9.

7.

TKI-addicted ROS1-rearranged cells are destined to survival or death by the intensity of ROS1 kinase activity.

Ogura H, Nagatake-Kobayashi Y, Adachi J, Tomonaga T, Fujita N, Katayama R.

Sci Rep. 2017 Jul 17;7(1):5519. doi: 10.1038/s41598-017-05736-9.

8.

Enhancement of TGF-β-induced Smad3 activity by c-Abl-mediated tyrosine phosphorylation of its coactivator SKI-interacting protein (SKIP).

Kuki K, Yamaguchi N, Iwasawa S, Takakura Y, Aoyama K, Yuki R, Nakayama Y, Kuga T, Hashimoto Y, Tomonaga T, Yamaguchi N.

Biochem Biophys Res Commun. 2017 Aug 26;490(3):1045-1051. doi: 10.1016/j.bbrc.2017.06.163. Epub 2017 Jun 28.

PMID:
28666867
9.

Discovery of drug targets by quantitative proteomics and their clinical application.

Tomonaga T.

Nihon Yakurigaku Zasshi. 2017;149(3):123-127. doi: 10.1254/fpj.149.123. Review. Japanese. No abstract available.

PMID:
28260742
10.

Proteomic analysis of urinary extracellular vesicles from high Gleason score prostate cancer.

Fujita K, Kume H, Matsuzaki K, Kawashima A, Ujike T, Nagahara A, Uemura M, Miyagawa Y, Tomonaga T, Nonomura N.

Sci Rep. 2017 Feb 17;7:42961. doi: 10.1038/srep42961.

11.

Assessment of Pulmonary Toxicity Induced by Inhaled Toner with External Additives.

Tomonaga T, Izumi H, Yoshiura Y, Myojo T, Oyabu T, Lee BW, Okada T, Li Y, Kawai K, Higashi T, Morimoto Y.

Biomed Res Int. 2017;2017:4245309. doi: 10.1155/2017/4245309. Epub 2017 Jan 16.

12.

Deep Phosphotyrosine Proteomics by Optimization of Phosphotyrosine Enrichment and MS/MS Parameters.

Abe Y, Nagano M, Tada A, Adachi J, Tomonaga T.

J Proteome Res. 2017 Feb 3;16(2):1077-1086. doi: 10.1021/acs.jproteome.6b00576. Epub 2016 Dec 5.

PMID:
28152594
13.

Identification of Small Peptides in Human Cerebrospinal Fluid upon Amyloid-β Degradation.

Mizuta N, Yanagida K, Kodama T, Tomonaga T, Takami M, Oyama H, Kudo T, Ikeda M, Takeda M, Tagami S, Okochi M.

Neurodegener Dis. 2017;17(2-3):103-109. doi: 10.1159/000453358. Epub 2017 Jan 20.

PMID:
28103595
14.

Src Acts as an Effector for Ku70-dependent Suppression of Apoptosis through Phosphorylation of Ku70 at Tyr-530.

Morii M, Kubota S, Honda T, Yuki R, Morinaga T, Kuga T, Tomonaga T, Yamaguchi N, Yamaguchi N.

J Biol Chem. 2017 Feb 3;292(5):1648-1665. doi: 10.1074/jbc.M116.753202. Epub 2016 Dec 20.

15.

Tyrosine Phosphorylation of the Pioneer Transcription Factor FoxA1 Promotes Activation of Estrogen Signaling.

Yamaguchi N, Shibazaki M, Yamada C, Anzai E, Morii M, Nakayama Y, Kuga T, Hashimoto Y, Tomonaga T, Yamaguchi N.

J Cell Biochem. 2017 Jun;118(6):1453-1461. doi: 10.1002/jcb.25804. Epub 2016 Dec 29.

PMID:
27883218
16.

Adenovirus vector-based incorporation of a photo-cross-linkable amino acid into proteins in human primary cells and cancerous cell lines.

Kita A, Hino N, Higashi S, Hirota K, Narumi R, Adachi J, Takafuji K, Ishimoto K, Okada Y, Sakamoto K, Tomonaga T, Takashima S, Mizuguchi H, Doi T.

Sci Rep. 2016 Nov 11;6:36946. doi: 10.1038/srep36946.

17.

Fibrinogen alpha C chain 5.9 kDa fragment (FIC5.9), a biomarker for various pathological conditions, is produced in post-blood collection by fibrinolysis and coagulation factors.

Kikuchi W, Nishimura M, Kuga T, Tsuchida S, Saito T, Satoh M, Noda K, Kodera Y, Tomonaga T, Nomura F.

Clin Proteomics. 2016 Oct 7;13:27. eCollection 2016.

18.

Casein kinase 1 is recruited to nuclear speckles by FAM83H and SON.

Kuga T, Kume H, Adachi J, Kawasaki N, Shimizu M, Hoshino I, Matsubara H, Saito Y, Nakayama Y, Tomonaga T.

Sci Rep. 2016 Sep 29;6:34472. doi: 10.1038/srep34472.

19.

Evaluation of Pulmonary Toxicity of Zinc Oxide Nanoparticles Following Inhalation and Intratracheal Instillation.

Morimoto Y, Izumi H, Yoshiura Y, Tomonaga T, Oyabu T, Myojo T, Kawai K, Yatera K, Shimada M, Kubo M, Yamamoto K, Kitajima S, Kuroda E, Kawaguchi K, Sasaki T.

Int J Mol Sci. 2016 Aug 1;17(8). pii: E1241. doi: 10.3390/ijms17081241.

20.

Improved Proteome and Phosphoproteome Analysis on a Cation Exchanger by a Combined Acid and Salt Gradient.

Adachi J, Hashiguchi K, Nagano M, Sato M, Sato A, Fukamizu K, Ishihama Y, Tomonaga T.

Anal Chem. 2016 Aug 16;88(16):7899-903. doi: 10.1021/acs.analchem.6b01232. Epub 2016 Aug 2.

PMID:
27436111
21.

Differentiation between Viable and Dead Cryptosporidium Oocysts Using Fluorochrome Staining.

Tomonaga T, Rai SK, Uga S.

Kobe J Med Sci. 2016 Apr 4;61(5):E138-43.

22.

Low-dose docetaxel, estramustine and prednisolone combination chemotherapy for castration-resistant prostate cancer.

Nakano M, Shoji S, Higure T, Kawakami M, Tomonaga T, Terachi T, Uchida T.

Mol Clin Oncol. 2016 Jun;4(6):942-946. Epub 2016 Mar 24.

23.

Corrigendum: Generation of a monoclonal antibody recognizing the CEACAM glycan structure and inhibiting adhesion using cancer tissue-originated spheroid as an antigen.

Sato Y, Tateno H, Adachi J, Okuyama H, Endo H, Tomonaga T, Inoue M.

Sci Rep. 2016 May 31;6:26575. doi: 10.1038/srep26575. No abstract available.

24.

FAM83H and casein kinase I regulate the organization of the keratin cytoskeleton and formation of desmosomes.

Kuga T, Sasaki M, Mikami T, Miake Y, Adachi J, Shimizu M, Saito Y, Koura M, Takeda Y, Matsuda J, Tomonaga T, Nakayama Y.

Sci Rep. 2016 May 25;6:26557. doi: 10.1038/srep26557.

25.

Generation of a monoclonal antibody recognizing the CEACAM glycan structure and inhibiting adhesion using cancer tissue-originated spheroid as an antigen.

Sato Y, Tateno H, Adachi J, Okuyama H, Endo H, Tomonaga T, Inoue M.

Sci Rep. 2016 Apr 21;6:24823. doi: 10.1038/srep24823. Erratum in: Sci Rep. 2016 May 31;6:26575.

26.

Cell surface localization of importin α1/KPNA2 affects cancer cell proliferation by regulating FGF1 signalling.

Yamada K, Miyamoto Y, Tsujii A, Moriyama T, Ikuno Y, Shiromizu T, Serada S, Fujimoto M, Tomonaga T, Naka T, Yoneda Y, Oka M.

Sci Rep. 2016 Feb 18;6:21410. doi: 10.1038/srep21410.

27.

Comparison of the Pulmonary Oxidative Stress Caused by Intratracheal Instillation and Inhalation of NiO Nanoparticles when Equivalent Amounts of NiO Are Retained in the Lung.

Horie M, Yoshiura Y, Izumi H, Oyabu T, Tomonaga T, Okada T, Lee BW, Myojo T, Kubo M, Shimada M, Morimoto Y.

Antioxidants (Basel). 2016 Jan 18;5(1). pii: E4. doi: 10.3390/antiox5010004.

28.

Targeted Phosphoproteome Analysis Using Selected/Multiple Reaction Monitoring (SRM/MRM).

Adachi J, Narumi R, Tomonaga T.

Methods Mol Biol. 2016;1394:87-100. doi: 10.1007/978-1-4939-3341-9_7.

PMID:
26700043
29.

Data for proteomic analysis of ATP-binding proteins and kinase inhibitor target proteins using an ATP probe.

Adachi J, Kishida M, Watanabe S, Hashimoto Y, Fukamizu K, Tomonaga T.

Data Brief. 2015 Oct 26;5:726-9. doi: 10.1016/j.dib.2015.10.018. eCollection 2015 Dec.

30.

Pulmonary toxicity of well-dispersed cerium oxide nanoparticles following intratracheal instillation and inhalation.

Morimoto Y, Izumi H, Yoshiura Y, Tomonaga T, Oyabu T, Myojo T, Kawai K, Yatera K, Shimada M, Kubo M, Yamamoto K, Kitajima S, Kuroda E, Kawaguchi K, Sasaki T.

J Nanopart Res. 2015;17(11):442. Epub 2015 Nov 13.

31.

Quantitative Analysis of Tissue Samples by Combining iTRAQ Isobaric Labeling with Selected/Multiple Reaction Monitoring (SRM/MRM).

Narumi R, Tomonaga T.

Methods Mol Biol. 2016;1355:85-101. doi: 10.1007/978-1-4939-3049-4_6.

PMID:
26584920
32.

Comparison of pulmonary inflammatory responses following intratracheal instillation and inhalation of nanoparticles.

Morimoto Y, Izumi H, Yoshiura Y, Tomonaga T, Lee BW, Okada T, Oyabu T, Myojo T, Kawai K, Yatera K, Shimada M, Kubo M, Yamamoto K, Kitajima S, Kuroda E, Horie M, Kawaguchi K, Sasaki T.

Nanotoxicology. 2016;10(5):607-18. doi: 10.3109/17435390.2015.1104740. Epub 2015 Nov 11.

PMID:
26558952
33.

[Biomarker Discovery of Colorectal Cancer Using Membrane Proteins Extracted from Cancer Tissues].

Tomonaga T, Kume H.

Rinsho Byori. 2015 Mar;63(3):322-7. Japanese.

PMID:
26524855
34.

Comparison between whole-body inhalation and nose-only inhalation on the deposition and health effects of nanoparticles.

Oyabu T, Morimoto Y, Izumi H, Yoshiura Y, Tomonaga T, Lee BW, Okada T, Myojo T, Shimada M, Kubo M, Yamamoto K, Kawaguchi K, Sasaki T.

Environ Health Prev Med. 2016 Jan;21(1):42-8. doi: 10.1007/s12199-015-0493-z. Epub 2015 Oct 5.

35.

Urethra-sparing high-intensity focused ultrasound for localized prostate cancer: Functional and oncological outcomes.

Shoji S, Nakano M, Fujikawa H, Endo K, Hashimoto A, Tomonaga T, Terachi T, Uchida T.

Int J Urol. 2015 Nov;22(11):1043-9. doi: 10.1111/iju.12876. Epub 2015 Aug 6.

36.

c-Abl-mediated tyrosine phosphorylation of JunB is required for Adriamycin-induced expression of p21.

Yamaguchi N, Yuki R, Kubota S, Aoyama K, Kuga T, Hashimoto Y, Tomonaga T, Yamaguchi N.

Biochem J. 2015 Oct 1;471(1):67-77. doi: 10.1042/BJ20150372. Epub 2015 Jul 27.

PMID:
26217035
37.

Correction: Transcriptional Dynamics of Immortalized Human Mesenchymal Stem Cells during Transformation.

Takeuchi M, Higashino A, Takeuchi K, Hori Y, Koshiba-Takeuchi K, Makino H, Monobe Y, Kishida M, Adachi J, Takeuchi J, Tomonaga T, Umezawa A, Kameoka Y, Akagi K.

PLoS One. 2015 Jun 22;10(6):e0131383. doi: 10.1371/journal.pone.0131383. eCollection 2015. No abstract available.

38.

Pulmonary toxicity of well-dispersed titanium dioxide nanoparticles following intratracheal instillation.

Yoshiura Y, Izumi H, Oyabu T, Hashiba M, Kambara T, Mizuguchi Y, Lee BW, Okada T, Tomonaga T, Myojo T, Yamamoto K, Kitajima S, Horie M, Kuroda E, Morimoto Y.

J Nanopart Res. 2015;17(6):241. Epub 2015 Jun 2.

39.

Differential Proteome Analysis Identifies TGF-β-Related Pro-Metastatic Proteins in a 4T1 Murine Breast Cancer Model.

Sato M, Matsubara T, Adachi J, Hashimoto Y, Fukamizu K, Kishida M, Yang YA, Wakefield LM, Tomonaga T.

PLoS One. 2015 May 18;10(5):e0126483. doi: 10.1371/journal.pone.0126483. eCollection 2015.

40.

Transcriptional Dynamics of Immortalized Human Mesenchymal Stem Cells during Transformation.

Takeuchi M, Higashino A, Takeuchi K, Hori Y, Koshiba-Takeuchi K, Makino H, Monobe Y, Kishida M, Adachi J, Takeuchi J, Tomonaga T, Umezawa A, Kameoka Y, Akagi K.

PLoS One. 2015 May 15;10(5):e0126562. doi: 10.1371/journal.pone.0126562. eCollection 2015. Erratum in: PLoS One. 2015;10(6):e0131383.

41.

Morphological analysis of the effects of intraoperative transrectal compression of the prostate during high-intensity focused ultrasound for localized prostate cancer.

Shoji S, Hashimoto A, Nakamoto M, Fukuda N, Fujikawa H, Endo K, Tomonaga T, Nakano M, Terachi T, Uchida T.

Int J Urol. 2015 Jun;22(6):563-71. doi: 10.1111/iju.12747. Epub 2015 Mar 23.

42.

Role for Tyrosine Phosphorylation of A-kinase Anchoring Protein 8 (AKAP8) in Its Dissociation from Chromatin and the Nuclear Matrix.

Kubota S, Morii M, Yuki R, Yamaguchi N, Yamaguchi H, Aoyama K, Kuga T, Tomonaga T, Yamaguchi N.

J Biol Chem. 2015 Apr 24;290(17):10891-904. doi: 10.1074/jbc.M115.643882. Epub 2015 Mar 13.

43.

Haploinsufficiency of the c-myc transcriptional repressor FIR, as a dominant negative-alternative splicing model, promoted p53-dependent T-cell acute lymphoblastic leukemia progression by activating Notch1.

Matsushita K, Kitamura K, Rahmutulla B, Tanaka N, Ishige T, Satoh M, Hoshino T, Miyagi S, Mori T, Itoga S, Shimada H, Tomonaga T, Kito M, Nakajima-Takagi Y, Kubo S, Nakaseko C, Hatano M, Miki T, Matsuo M, Fukuyo M, Kaneda A, Iwama A, Nomura F.

Oncotarget. 2015 Mar 10;6(7):5102-17.

44.

Correction to "Proteome-Wide Discovery of Unknown ATP-Binding Proteins and Kinase Inhibitor Target Proteins Using an ATP Probe".

Adachi J, Kishida M, Watanabe S, Hashimoto Y, Fukamizu K, Tomonaga T.

J Proteome Res. 2015 Feb 6;14(2):1333. doi: 10.1021/pr5012685. Epub 2015 Jan 7. No abstract available.

PMID:
25564989
45.

c-Abl induces stabilization of histone deacetylase 1 (HDAC1) in a kinase activity-dependent manner.

Aoyama K, Yamaguchi N, Yuki R, Morii M, Kubota S, Hirata K, Abe K, Honda T, Kuga T, Hashimoto Y, Tomonaga T, Yamaguchi N.

Cell Biol Int. 2015 Apr;39(4):446-56. doi: 10.1002/cbin.10413. Epub 2015 Jan 5.

PMID:
25561363
46.

Serum periplakin as a potential biomarker for urothelial carcinoma of the urinary bladder.

Matsumoto K, Ikeda M, Matsumoto T, Nagashio R, Nishimori T, Tomonaga T, Nomura F, Sato Y, Kitasato H, Iwamura M.

Asian Pac J Cancer Prev. 2014;15(22):9927-31.

47.

Nuclear accumulation of annexin A2 contributes to chromosomal instability by coilin-mediated centromere damage.

Kazami T, Nie H, Satoh M, Kuga T, Matsushita K, Kawasaki N, Tomonaga T, Nomura F.

Oncogene. 2015 Aug 6;34(32):4177-89. doi: 10.1038/onc.2014.345. Epub 2014 Oct 27.

PMID:
25347736
48.

Manually controlled targeted prostate biopsy with real-time fusion imaging of multiparametric magnetic resonance imaging and transrectal ultrasound: an early experience.

Shoji S, Hiraiwa S, Endo J, Hashida K, Tomonaga T, Nakano M, Sugiyama T, Tajiri T, Terachi T, Uchida T.

Int J Urol. 2015 Feb;22(2):173-8. doi: 10.1111/iju.12643. Epub 2014 Oct 14.

49.

Prostate cancer with cyst formation detected by whole body positron emission tomography/computed tomography: A case report.

Kim H, Shoji S, Tomonaga T, Shima M, Terachi T, Uchida T.

Oncol Lett. 2014 Nov;8(5):2037-2039. Epub 2014 Sep 8.

50.

Proteome-wide discovery of unknown ATP-binding proteins and kinase inhibitor target proteins using an ATP probe.

Adachi J, Kishida M, Watanabe S, Hashimoto Y, Fukamizu K, Tomonaga T.

J Proteome Res. 2014 Dec 5;13(12):5461-70. doi: 10.1021/pr500845u. Epub 2014 Sep 30. Erratum in: J Proteome Res. 2015 Feb 6;14(2):1333.

PMID:
25230287

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