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Items: 17

1.

Correction: Modeling differentiation-state transitions linked to therapeutic escape in triple-negative breast cancer.

Chapman MP, Risom T, Aswani AJ, Langer EM, Sears RC, Tomlin CJ.

PLoS Comput Biol. 2019 Oct 9;15(10):e1007441. doi: 10.1371/journal.pcbi.1007441. eCollection 2019 Oct.

2.

Modeling differentiation-state transitions linked to therapeutic escape in triple-negative breast cancer.

Chapman MP, Risom T, Aswani AJ, Langer EM, Sears RC, Tomlin CJ.

PLoS Comput Biol. 2019 Mar 11;15(3):e1006840. doi: 10.1371/journal.pcbi.1006840. eCollection 2019 Mar. Erratum in: PLoS Comput Biol. 2019 Oct 9;15(10):e1007441.

3.

Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer.

Risom T, Langer EM, Chapman MP, Rantala J, Fields AJ, Boniface C, Alvarez MJ, Kendsersky ND, Pelz CR, Johnson-Camacho K, Dobrolecki LE, Chin K, Aswani AJ, Wang NJ, Califano A, Lewis MT, Tomlin CJ, Spellman PT, Adey A, Gray JW, Sears RC.

Nat Commun. 2018 Sep 19;9(1):3815. doi: 10.1038/s41467-018-05729-w.

4.

Reconstruction of Gene Regulatory Networks based on Repairing Sparse Low-rank Matrices.

Chang YH, Dobbe R, Bhushan P, Gray JW, Tomlin CJ.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Jul-Aug;13(4):767-777. Epub 2015 Aug 7.

5.

Accelerating Submovement Decomposition With Search-Space Reduction Heuristics.

Gowda S, Overduin SA, Chen M, Chang YH, Tomlin CJ, Carmena JM.

IEEE Trans Biomed Eng. 2015 Oct;62(10):2508-15. doi: 10.1109/TBME.2015.2434595. Epub 2015 May 18.

PMID:
26011861
6.

Disentangling multidimensional spatio-temporal data into their common and aberrant responses.

Chang YH, Korkola J, Amin DN, Moasser MM, Carmena JM, Gray JW, Tomlin CJ.

PLoS One. 2015 Apr 22;10(4):e0121607. doi: 10.1371/journal.pone.0121607. eCollection 2015.

7.

Exact reconstruction of gene regulatory networks using compressive sensing.

Chang YH, Gray JW, Tomlin CJ.

BMC Bioinformatics. 2014 Dec 14;15:400. doi: 10.1186/s12859-014-0400-4.

8.

Microtubules provide directional information for core PCP function.

Matis M, Russler-Germain DA, Hu Q, Tomlin CJ, Axelrod JD.

Elife. 2014 Aug 14;3:e02893. doi: 10.7554/eLife.02893.

9.

Single timepoint models of dynamic systems.

Sachs K, Itani S, Fitzgerald J, Schoeberl B, Nolan GP, Tomlin CJ.

Interface Focus. 2013 Aug 6;3(4):20130019. doi: 10.1098/rsfs.2013.0019.

10.

Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay.

Lee ME, Aswani A, Han AS, Tomlin CJ, Dueber JE.

Nucleic Acids Res. 2013 Dec;41(22):10668-78. doi: 10.1093/nar/gkt809. Epub 2013 Sep 12.

11.

A mathematical model to study the dynamics of epithelial cellular networks.

Abate A, Vincent S, Dobbe R, Silletti A, Master N, Axelrod JD, Tomlin CJ.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1607-20. doi: 10.1109/TCBB.2012.126.

12.

Modeling the control of planar cell polarity.

Axelrod JD, Tomlin CJ.

Wiley Interdiscip Rev Syst Biol Med. 2011 Sep-Oct;3(5):588-605. doi: 10.1002/wsbm.138. Epub 2011 Feb 16.

13.

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data.

Aswani A, Keränen SV, Brown J, Fowlkes CC, Knowles DW, Biggin MD, Bickel P, Tomlin CJ.

BMC Bioinformatics. 2010 Aug 4;11:413. doi: 10.1186/1471-2105-11-413.

14.

Cell packing influences planar cell polarity signaling.

Ma D, Amonlirdviman K, Raffard RL, Abate A, Tomlin CJ, Axelrod JD.

Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18800-5. doi: 10.1073/pnas.0808868105. Epub 2008 Nov 20.

15.

Biology by numbers: mathematical modelling in developmental biology.

Tomlin CJ, Axelrod JD.

Nat Rev Genet. 2007 May;8(5):331-40. Review.

PMID:
17440530
16.

Understanding biology by reverse engineering the control.

Tomlin CJ, Axelrod JD.

Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4219-20. Epub 2005 Mar 14. No abstract available.

17.

Mathematical modeling of planar cell polarity to understand domineering nonautonomy.

Amonlirdviman K, Khare NA, Tree DR, Chen WS, Axelrod JD, Tomlin CJ.

Science. 2005 Jan 21;307(5708):423-6.

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