Sort by
Items per page

Send to

Choose Destination

Search results

Items: 30


Microbiome and Blood Analyte Differences Point to Community and Metabolic Signatures in Lean and Obese Horses.

Biddle AS, Tomb JF, Fan Z.

Front Vet Sci. 2018 Sep 20;5:225. doi: 10.3389/fvets.2018.00225. eCollection 2018.


The Omics Dashboard for interactive exploration of gene-expression data.

Paley S, Parker K, Spaulding A, Tomb JF, O'Maille P, Karp PD.

Nucleic Acids Res. 2017 Dec 1;45(21):12113-12124. doi: 10.1093/nar/gkx910.


CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data.

Carreira R, Evangelista P, Maia P, Vilaça P, Pont M, Tomb JF, Rocha I, Rocha M.

BMC Syst Biol. 2014 Dec 3;8:123. doi: 10.1186/s12918-014-0123-1.


An integrated computational environment for elementary modes analysis of biochemical networks.

Maia P, Vilaça P, Rocha I, Pont M, Tomb JF, Rocha M.

Int J Data Min Bioinform. 2012;6(4):382-95.


Electron transport in acetate-grown Methanosarcina acetivorans.

Wang M, Tomb JF, Ferry JG.

BMC Microbiol. 2011 Jul 24;11:165. doi: 10.1186/1471-2180-11-165.


Characterization of CamH from Methanosarcina thermophila, founding member of a subclass of the {gamma} class of carbonic anhydrases.

Zimmerman SA, Tomb JF, Ferry JG.

J Bacteriol. 2010 Mar;192(5):1353-60. doi: 10.1128/JB.01164-09. Epub 2009 Dec 18.


Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods.

Pham VD, Hnatow LL, Zhang S, Fallon RD, Jackson SC, Tomb JF, DeLong EF, Keeler SJ.

Environ Microbiol. 2009 Jan;11(1):176-87. doi: 10.1111/j.1462-2920.2008.01751.x. Epub 2008 Sep 2.


TraA is required for megaplasmid conjugation in Rhodococcus erythropolis AN12.

Yang JC, Lessard PA, Sengupta N, Windsor SD, O'brien XM, Bramucci M, Tomb JF, Nagarajan V, Sinskey AJ.

Plasmid. 2007 Jan;57(1):55-70. Epub 2006 Sep 25.


Identification of bifunctional delta12/omega3 fatty acid desaturases for improving the ratio of omega3 to omega6 fatty acids in microbes and plants.

Damude HG, Zhang H, Farrall L, Ripp KG, Tomb JF, Hollerbach D, Yadav NS.

Proc Natl Acad Sci U S A. 2006 Jun 20;103(25):9446-51. Epub 2006 Jun 8.


A small cryptic plasmid from Rhodococcus erythropolis: characterization and utility for gene expression.

Kostichka K, Tao L, Bramucci M, Tomb JF, Nagarajan V, Cheng Q.

Appl Microbiol Biotechnol. 2003 Jul;62(1):61-8. Epub 2003 Mar 11.


The genome of the natural genetic engineer Agrobacterium tumefaciens C58.

Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE, Almeida NF Jr, Woo L, Chen Y, Paulsen IT, Eisen JA, Karp PD, Bovee D Sr, Chapman P, Clendenning J, Deatherage G, Gillet W, Grant C, Kutyavin T, Levy R, Li MJ, McClelland E, Palmieri A, Raymond C, Rouse G, Saenphimmachak C, Wu Z, Romero P, Gordon D, Zhang S, Yoo H, Tao Y, Biddle P, Jung M, Krespan W, Perry M, Gordon-Kamm B, Liao L, Kim S, Hendrick C, Zhao ZY, Dolan M, Chumley F, Tingey SV, Tomb JF, Gordon MP, Olson MV, Nester EW.

Science. 2001 Dec 14;294(5550):2317-23.


Skewed oligomers and origins of replication.

Salzberg SL, Salzberg AJ, Kerlavage AR, Tomb JF.

Gene. 1998 Sep 14;217(1-2):57-67.


A new transformation-deficient mutant of Haemophilus influenzae Rd with normal DNA uptake.

Gwinn ML, Ramanathan R, Smith HO, Tomb JF.

J Bacteriol. 1998 Feb;180(3):746-8.


A panoramic view of bacterial transcription.

Tomb JF.

Nat Biotechnol. 1998 Jan;16(1):23. No abstract available.


Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi.

Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, Adams MD, Gocayne J, Weidman J, Utterback T, Watthey L, McDonald L, Artiach P, Bowman C, Garland S, Fuji C, Cotton MD, Horst K, Roberts K, Hatch B, Smith HO, Venter JC.

Nature. 1997 Dec 11;390(6660):580-6.


In vitro Tn7 mutagenesis of Haemophilus influenzae Rd and characterization of the role of atpA in transformation.

Gwinn ML, Stellwagen AE, Craig NL, Tomb JF, Smith HO.

J Bacteriol. 1997 Dec;179(23):7315-20.


The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.

Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, Quackenbush J, Lee NH, Sutton GG, Gill S, Kirkness EF, Dougherty BA, McKenney K, Adams MD, Loftus B, Peterson S, Reich CI, McNeil LK, Badger JH, Glodek A, Zhou L, Overbeek R, Gocayne JD, Weidman JF, McDonald L, Utterback T, Cotton MD, Spriggs T, Artiach P, Kaine BP, Sykes SM, Sadow PW, D'Andrea KP, Bowman C, Fujii C, Garland SA, Mason TM, Olsen GJ, Fraser CM, Smith HO, Woese CR, Venter JC.

Nature. 1997 Nov 27;390(6658):364-70. Erratum in: Nature 1998 Jul 2;394(6688):101.


The complete genome sequence of the gastric pathogen Helicobacter pylori.

Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, Ketchum KA, Klenk HP, Gill S, Dougherty BA, Nelson K, Quackenbush J, Zhou L, Kirkness EF, Peterson S, Loftus B, Richardson D, Dodson R, Khalak HG, Glodek A, McKenney K, Fitzegerald LM, Lee N, Adams MD, Hickey EK, Berg DE, Gocayne JD, Utterback TR, Peterson JD, Kelley JM, Cotton MD, Weidman JM, Fujii C, Bowman C, Watthey L, Wallin E, Hayes WS, Borodovsky M, Karp PD, Smith HO, Fraser CM, Venter JC.

Nature. 1997 Aug 7;388(6642):539-47. Erratum in: Nature 1997 Sep 25;389(6649):412.


Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.

Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AR, Dougherty BA, Tomb JF, Adams MD, Reich CI, Overbeek R, Kirkness EF, Weinstock KG, Merrick JM, Glodek A, Scott JL, Geoghagen NS, Venter JC.

Science. 1996 Aug 23;273(5278):1058-73.


The minimal gene complement of Mycoplasma genitalium.

Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton G, Kelley JM, Fritchman RD, Weidman JF, Small KV, Sandusky M, Fuhrmann J, Nguyen D, Utterback TR, Saudek DM, Phillips CA, Merrick JM, Tomb JF, Dougherty BA, Bott KF, Hu PC, Lucier TS, Peterson SN, Smith HO, Hutchison CA 3rd, Venter JC.

Science. 1995 Oct 20;270(5235):397-403.


Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome.

Smith HO, Tomb JF, Dougherty BA, Fleischmann RD, Venter JC.

Science. 1995 Jul 28;269(5223):538-40.


Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM, et al.

Science. 1995 Jul 28;269(5223):496-512.


Genetic systems in Haemophilus influenzae.

Barcak GJ, Chandler MS, Redfield RJ, Tomb JF.

Methods Enzymol. 1991;204:321-42. Review. No abstract available.


Regulating the 3'-5' activity of exonuclease III by varying the sodium chloride concentration.

Tomb JF, Barcak GJ.

Biotechniques. 1989 Oct;7(9):932-3. No abstract available.


Transposon mutagenesis, characterization, and cloning of transformation genes of Haemophilus influenzae Rd.

Tomb JF, Barcak GJ, Chandler MS, Redfield RJ, Smith HO.

J Bacteriol. 1989 Jul;171(7):3796-802.


Two Haemophilus influenzae Rd genes that complement the recA-like mutation rec-1.

Barcak GJ, Tomb JF, Laufer CS, Smith HO.

J Bacteriol. 1989 May;171(5):2451-7.

Supplemental Content

Support Center