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Clustered core- and pan-genome content on Rhodobacteraceae chromosomes.

Kopejtka K, Lin Y, Jakubovičová M, Koblížek M, Tomasch J.

Genome Biol Evol. 2019 Jul 3. pii: evz138. doi: 10.1093/gbe/evz138. [Epub ahead of print]


Integrated Transcriptional Regulatory Network of Quorum Sensing, Replication Control, and SOS Response in Dinoroseobacter shibae.

Koppenhöfer S, Wang H, Scharfe M, Kaever V, Wagner-Döbler I, Tomasch J.

Front Microbiol. 2019 Apr 12;10:803. doi: 10.3389/fmicb.2019.00803. eCollection 2019.


High diversity of thermophilic cyanobacteria in Rupite hot spring identified by microscopy, cultivation, single-cell PCR and amplicon sequencing.

Strunecký O, Kopejtka K, Goecke F, Tomasch J, Lukavský J, Neori A, Kahl S, Pieper DH, Pilarski P, Kaftan D, Koblížek M.

Extremophiles. 2019 Jan;23(1):35-48. doi: 10.1007/s00792-018-1058-z. Epub 2018 Oct 4.


The Importance of Biophysical and Biochemical Stimuli in Dynamic Skeletal Muscle Models.

Maleiner B, Tomasch J, Heher P, Spadiut O, Rünzler D, Fuchs C.

Front Physiol. 2018 Aug 22;9:1130. doi: 10.3389/fphys.2018.01130. eCollection 2018. Review.


The complete genome sequence of Rhodobaca barguzinensis alga05 (DSM 19920) documents its adaptation for life in soda lakes.

Kopejtka K, Tomasch J, Bunk B, Spröer C, Wagner-Döbler I, Koblížek M.

Extremophiles. 2018 Nov;22(6):839-849. doi: 10.1007/s00792-018-1041-8. Epub 2018 Jul 18.


Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS).

Piwosz K, Shabarova T, Tomasch J, Šimek K, Kopejtka K, Kahl S, Pieper DH, Koblížek M.

ISME J. 2018 Nov;12(11):2640-2654. doi: 10.1038/s41396-018-0213-y. Epub 2018 Jul 6.


Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random.

Tomasch J, Wang H, Hall ATK, Patzelt D, Preusse M, Petersen J, Brinkmann H, Bunk B, Bhuju S, Jarek M, Geffers R, Lang AS, Wagner-Döbler I.

Genome Biol Evol. 2018 Jan 1;10(1):359-369. doi: 10.1093/gbe/evy005.


Genomic Analysis of the Evolution of Phototrophy among Haloalkaliphilic Rhodobacterales.

Kopejtka K, Tomasch J, Zeng Y, Tichý M, Sorokin DY, Koblížek M.

Genome Biol Evol. 2017 Jul 1;9(7):1950-1962. doi: 10.1093/gbe/evx141.


Use of Single-Frequency Impedance Spectroscopy to Characterize the Growth Dynamics of Biofilm Formation in Pseudomonas aeruginosa.

van Duuren JBJH, Müsken M, Karge B, Tomasch J, Wittmann C, Häussler S, Brönstrup M.

Sci Rep. 2017 Jul 12;7(1):5223. doi: 10.1038/s41598-017-05273-5.


Dual function of tropodithietic acid as antibiotic and signaling molecule in global gene regulation of the probiotic bacterium Phaeobacter inhibens.

Beyersmann PG, Tomasch J, Son K, Stocker R, Göker M, Wagner-Döbler I, Simon M, Brinkhoff T.

Sci Rep. 2017 Apr 7;7(1):730. doi: 10.1038/s41598-017-00784-7.


Fixation of CO2 using the ethylmalonyl-CoA pathway in the photoheterotrophic marine bacterium Dinoroseobacter shibae.

Bill N, Tomasch J, Riemer A, Müller K, Kleist S, Schmidt-Hohagen K, Wagner-Döbler I, Schomburg D.

Environ Microbiol. 2017 Jul;19(7):2645-2660. doi: 10.1111/1462-2920.13746. Epub 2017 Jul 7.


Quorum sensing of Streptococcus mutans is activated by Aggregatibacter actinomycetemcomitans and by the periodontal microbiome.

Szafrański SP, Deng ZL, Tomasch J, Jarek M, Bhuju S, Rohde M, Sztajer H, Wagner-Döbler I.

BMC Genomics. 2017 Mar 20;18(1):238. doi: 10.1186/s12864-017-3618-5.


Gene Flow Across Genus Barriers - Conjugation of Dinoroseobacter shibae's 191-kb Killer Plasmid into Phaeobacter inhibens and AHL-mediated Expression of Type IV Secretion Systems.

Patzelt D, Michael V, Päuker O, Ebert M, Tielen P, Jahn D, Tomasch J, Petersen J, Wagner-Döbler I.

Front Microbiol. 2016 May 31;7:742. doi: 10.3389/fmicb.2016.00742. eCollection 2016.


Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton.

Milici M, Deng ZL, Tomasch J, Decelle J, Wos-Oxley ML, Wang H, Jáuregui R, Plumeier I, Giebel HA, Badewien TH, Wurst M, Pieper DH, Simon M, Wagner-Döbler I.

Front Microbiol. 2016 May 6;7:649. doi: 10.3389/fmicb.2016.00649. eCollection 2016.


Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship.

Milici M, Tomasch J, Wos-Oxley ML, Decelle J, Jáuregui R, Wang H, Deng ZL, Plumeier I, Giebel HA, Badewien TH, Wurst M, Pieper DH, Simon M, Wagner-Döbler I.

Front Microbiol. 2016 Apr 26;7:590. doi: 10.3389/fmicb.2016.00590. eCollection 2016.


Integrated analysis of gene expression and metabolic fluxes in PHA-producing Pseudomonas putida grown on glycerol.

Beckers V, Poblete-Castro I, Tomasch J, Wittmann C.

Microb Cell Fact. 2016 May 3;15:73. doi: 10.1186/s12934-016-0470-2.


Low diversity of planktonic bacteria in the tropical ocean.

Milici M, Tomasch J, Wos-Oxley ML, Wang H, Jáuregui R, Camarinha-Silva A, Deng ZL, Plumeier I, Giebel HA, Wurst M, Pieper DH, Simon M, Wagner-Döbler I.

Sci Rep. 2016 Jan 11;6:19054. doi: 10.1038/srep19054.


Identification of Genetic Modules Mediating the Jekyll and Hyde Interaction of Dinoroseobacter shibae with the Dinoflagellate Prorocentrum minimum.

Wang H, Tomasch J, Michael V, Bhuju S, Jarek M, Petersen J, Wagner-Döbler I.

Front Microbiol. 2015 Nov 13;6:1262. doi: 10.3389/fmicb.2015.01262. eCollection 2015.


Functional biomarkers for chronic periodontitis and insights into the roles of Prevotella nigrescens and Fusobacterium nucleatum; a metatranscriptome analysis.

Szafrański SP, Deng ZL, Tomasch J, Jarek M, Bhuju S, Meisinger C, Kühnisch J, Sztajer H, Wagner-Döbler I.

NPJ Biofilms Microbiomes. 2015 Sep 23;1:15017. doi: 10.1038/npjbiofilms.2015.17. eCollection 2015.


The Alternative Sigma Factor SigX Controls Bacteriocin Synthesis and Competence, the Two Quorum Sensing Regulated Traits in Streptococcus mutans.

Reck M, Tomasch J, Wagner-Döbler I.

PLoS Genet. 2015 Jul 9;11(7):e1005353. doi: 10.1371/journal.pgen.1005353. eCollection 2015 Jul.


Stool metatranscriptomics: A technical guideline for mRNA stabilisation and isolation.

Reck M, Tomasch J, Deng Z, Jarek M, Husemann P, Wagner-Döbler I; COMBACTE Consortium.

BMC Genomics. 2015 Jul 4;16:494. doi: 10.1186/s12864-015-1694-y.


Oxidative stress and starvation in Dinoroseobacter shibae: the role of extrachromosomal elements.

Soora M, Tomasch J, Wang H, Michael V, Petersen J, Engelen B, Wagner-Döbler I, Cypionka H.

Front Microbiol. 2015 Mar 25;6:233. doi: 10.3389/fmicb.2015.00233. eCollection 2015.


High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis.

Szafranski SP, Wos-Oxley ML, Vilchez-Vargas R, Jáuregui R, Plumeier I, Klawonn F, Tomasch J, Meisinger C, Kühnisch J, Sztajer H, Pieper DH, Wagner-Döbler I.

Appl Environ Microbiol. 2015 Feb;81(3):1047-58. doi: 10.1128/AEM.03534-14. Epub 2014 Dec 1.


A dual-species co-cultivation system to study the interactions between Roseobacters and dinoflagellates.

Wang H, Tomasch J, Jarek M, Wagner-Döbler I.

Front Microbiol. 2014 Jun 25;5:311. doi: 10.3389/fmicb.2014.00311. eCollection 2014.


Cross-feeding and interkingdom communication in dual-species biofilms of Streptococcus mutans and Candida albicans.

Sztajer H, Szafranski SP, Tomasch J, Reck M, Nimtz M, Rohde M, Wagner-Döbler I.

ISME J. 2014 Nov;8(11):2256-71. doi: 10.1038/ismej.2014.73. Epub 2014 May 13.


The CtrA phosphorelay integrates differentiation and communication in the marine alphaproteobacterium Dinoroseobacter shibae.

Wang H, Ziesche L, Frank O, Michael V, Martin M, Petersen J, Schulz S, Wagner-Döbler I, Tomasch J.

BMC Genomics. 2014 Feb 13;15:130. doi: 10.1186/1471-2164-15-130.


BOR-syndrome-associated Eya1 mutations lead to enhanced proteasomal degradation of Eya1 protein.

Musharraf A, Kruspe D, Tomasch J, Besenbeck B, Englert C, Landgraf K.

PLoS One. 2014 Jan 29;9(1):e87407. doi: 10.1371/journal.pone.0087407. eCollection 2014.


You are what you talk: quorum sensing induces individual morphologies and cell division modes in Dinoroseobacter shibae.

Patzelt D, Wang H, Buchholz I, Rohde M, Gröbe L, Pradella S, Neumann A, Schulz S, Heyber S, Münch K, Münch R, Jahn D, Wagner-Döbler I, Tomasch J.

ISME J. 2013 Dec;7(12):2274-86. doi: 10.1038/ismej.2013.107. Epub 2013 Jul 4.


Ectopic expression of homeobox gene NKX2-1 in diffuse large B-cell lymphoma is mediated by aberrant chromatin modifications.

Nagel S, Ehrentraut S, Tomasch J, Quentmeier H, Meyer C, Kaufmann M, Drexler HG, MacLeod RA.

PLoS One. 2013 Apr 29;8(4):e61447. doi: 10.1371/journal.pone.0061447. Print 2013. Erratum in: PLoS One. 2013;8(6). doi:10.1371/annotation/3989404d-132f-4f07-a39e-c060d9094611.


Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein.

Riedel T, Gómez-Consarnau L, Tomasch J, Martin M, Jarek M, González JM, Spring S, Rohlfs M, Brinkhoff T, Cypionka H, Göker M, Fiebig A, Klein J, Goesmann A, Fuhrman JA, Wagner-Döbler I.

PLoS One. 2013;8(3):e57487. doi: 10.1371/journal.pone.0057487. Epub 2013 Mar 4.


Transcriptional activation of prostate specific homeobox gene NKX3-1 in subsets of T-cell lymphoblastic leukemia (T-ALL).

Nagel S, Ehrentraut S, Tomasch J, Lienenklaus S, Schneider B, Geffers R, Meyer C, Kaufmann M, Drexler HG, MacLeod RA.

PLoS One. 2012;7(7):e40747. doi: 10.1371/journal.pone.0040747. Epub 2012 Jul 27.


The biofilm inhibitor carolacton disturbs membrane integrity and cell division of Streptococcus mutans through the serine/threonine protein kinase PknB.

Reck M, Rutz K, Kunze B, Tomasch J, Surapaneni SK, Schulz S, Wagner-Döbler I.

J Bacteriol. 2011 Oct;193(20):5692-706. doi: 10.1128/JB.05424-11. Epub 2011 Aug 12.


Transcriptional response of the photoheterotrophic marine bacterium Dinoroseobacter shibae to changing light regimes.

Tomasch J, Gohl R, Bunk B, Diez MS, Wagner-Döbler I.

ISME J. 2011 Dec;5(12):1957-68. doi: 10.1038/ismej.2011.68. Epub 2011 Jun 9.


Subpopulation-specific transcriptome analysis of competence-stimulating-peptide-induced Streptococcus mutans.

Lemme A, Gröbe L, Reck M, Tomasch J, Wagner-Döbler I.

J Bacteriol. 2011 Apr;193(8):1863-77. doi: 10.1128/JB.01363-10. Epub 2011 Feb 11.


The delta subunit of RNA polymerase, RpoE, is a global modulator of Streptococcus mutans environmental adaptation.

Xue X, Tomasch J, Sztajer H, Wagner-Döbler I.

J Bacteriol. 2010 Oct;192(19):5081-92. doi: 10.1128/JB.00653-10. Epub 2010 Jul 30.


Constitutive expression of the proteorhodopsin gene by a flavobacterium strain representative of the proteorhodopsin-producing microbial community in the North Sea.

Riedel T, Tomasch J, Buchholz I, Jacobs J, Kollenberg M, Gerdts G, Wichels A, Brinkhoff T, Cypionka H, Wagner-Döbler I.

Appl Environ Microbiol. 2010 May;76(10):3187-97. doi: 10.1128/AEM.02971-09. Epub 2010 Mar 19.


Metabolic fluxes in the central carbon metabolism of Dinoroseobacter shibae and Phaeobacter gallaeciensis, two members of the marine Roseobacter clade.

Fürch T, Preusse M, Tomasch J, Zech H, Wagner-Döbler I, Rabus R, Wittmann C.

BMC Microbiol. 2009 Sep 29;9:209. doi: 10.1186/1471-2180-9-209.


The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

Wagner-Döbler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M.

ISME J. 2010 Jan;4(1):61-77. doi: 10.1038/ismej.2009.94. Epub 2009 Sep 10.


[Retroperitoneal hematoma and femoral compression neuropathy--a complication of anticoagulation therapy after myocardial infarct].

Kristian P, Kucinský R, Gonsorcík J, Jonás P, Tokarcíková A, Lazúr J, Jurgová T, Tomasch J.

Vnitr Lek. 1998 Jun;44(6):366-9. Slovak.


[Cystic lesions of the prostate--diagnosis, therapy and clinical significance].

Nagy V, Valanský L, Zachar M, Horváth S, Tomasch J.

Rozhl Chir. 1992 Nov;71(11):624-30. Slovak.


Numerical size variability in the peripheral nerve.

Tomasch J.

Acta Anat (Basel). 1983;115(1):78-90.


Cell frequencies in the abducens nucleus of man.

Tomasch J.

Confin Neurol. 1973;35(5):257-62. No abstract available.


[Is there a continuous loss of neurons due to aging?].

Tomasch J.

Wien Klin Wochenschr. 1972 Mar 17;84(11):169-70. German. No abstract available.


Comments on "neuromythology".

Tomasch J.

Nature. 1971 Sep 3;233(5314):60. No abstract available.


[Quantitative relationships of the functional systems in the human cerebellum].

Tomasch J.

Nervenarzt. 1969 Oct;40(10):494-7. Review. German. No abstract available.


[The correction of the oblique section error in the computation fiber bundles which are in parallel arrangement].

Tomasch J.

Mikroskopie. 1969 Jul;24(3):91-4. German. No abstract available.


The numerical capacity of the human cortico-pontocerebellar system.

Tomasch J.

Brain Res. 1969 May;13(3):476-84. No abstract available.


Numerical capacities of cerebellar cell and fiber systems.

Tomasch J.

Experientia. 1969 Apr 15;25(4):377-8. No abstract available.


The numerical capacity of the pontine cell and fibre systems.

Tomasch J.

J Anat. 1969 Jan;104(Pt 1):187. No abstract available.


Neuron numbers and perikaryon areas in the human cerebellar nuclei.

Heidary H, Tomasch J.

Acta Anat (Basel). 1969;74(2):290-6. No abstract available.


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