Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 88

1.

VCP Machinery Mediates Autophagic Degradation of Empty Argonaute.

Kobayashi H, Shoji K, Kiyokawa K, Negishi L, Tomari Y.

Cell Rep. 2019 Jul 30;28(5):1144-1153.e4. doi: 10.1016/j.celrep.2019.07.003.

2.

Iruka Eliminates Dysfunctional Argonaute by Selective Ubiquitination of Its Empty State.

Kobayashi H, Shoji K, Kiyokawa K, Negishi L, Tomari Y.

Mol Cell. 2019 Jan 3;73(1):119-129.e5. doi: 10.1016/j.molcel.2018.10.033. Epub 2018 Nov 29.

PMID:
30503771
3.

Conformational Activation of Argonaute by Distinct yet Coordinated Actions of the Hsp70 and Hsp90 Chaperone Systems.

Tsuboyama K, Tadakuma H, Tomari Y.

Mol Cell. 2018 May 17;70(4):722-729.e4. doi: 10.1016/j.molcel.2018.04.010.

4.

PNLDC1, mouse pre-piRNA Trimmer, is required for meiotic and post-meiotic male germ cell development.

Nishimura T, Nagamori I, Nakatani T, Izumi N, Tomari Y, Kuramochi-Miyagawa S, Nakano T.

EMBO Rep. 2018 Mar;19(3). pii: e44957. doi: 10.15252/embr.201744957. Epub 2018 Feb 14.

5.

Transcriptome profiling reveals infection strategy of an insect maculavirus.

Katsuma S, Kawamoto M, Shoji K, Aizawa T, Kiuchi T, Izumi N, Ogawa M, Mashiko T, Kawasaki H, Sugano S, Tomari Y, Suzuki Y, Iwanaga M.

DNA Res. 2018 Jan 17. doi: 10.1093/dnares/dsx056. [Epub ahead of print]

6.

Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2.

Zhang H, Liu K, Izumi N, Huang H, Ding D, Ni Z, Sidhu SS, Chen C, Tomari Y, Min J.

Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):12483-12488. doi: 10.1073/pnas.1711486114. Epub 2017 Nov 8.

7.

Single-Molecule Analysis for RISC Assembly and Target Cleavage.

Sasaki HM, Tadakuma H, Tomari Y.

Methods Mol Biol. 2018;1680:145-164. doi: 10.1007/978-1-4939-7339-2_10.

PMID:
29030847
8.

Reconstitution of RNA Interference Machinery.

Iwasaki S, Tomari Y.

Methods Mol Biol. 2018;1680:131-143. doi: 10.1007/978-1-4939-7339-2_9.

PMID:
29030846
9.

Biochemical and single-molecule analyses of the RNA silencing suppressing activity of CrPV-1A.

Watanabe M, Iwakawa HO, Tadakuma H, Tomari Y.

Nucleic Acids Res. 2017 Oct 13;45(18):10837-10844. doi: 10.1093/nar/gkx748.

10.

In vitro reconstitution of chaperone-mediated human RISC assembly.

Naruse K, Matsuura-Suzuki E, Watanabe M, Iwasaki S, Tomari Y.

RNA. 2018 Jan;24(1):6-11. doi: 10.1261/rna.063891.117. Epub 2017 Oct 2.

11.

Silencing messages in a unique way.

Iwakawa HO, Tomari Y.

Nat Plants. 2017 Oct;3(10):769-770. doi: 10.1038/s41477-017-0028-2. No abstract available.

PMID:
28970573
12.

In Vitro Analysis of ARGONAUTE-Mediated Target Cleavage and Translational Repression in Plants.

Tomari Y, Iwakawa HO.

Methods Mol Biol. 2017;1640:55-71. doi: 10.1007/978-1-4939-7165-7_4.

PMID:
28608334
13.

Pervasive yet nonuniform contributions of Dcp2 and Cnot7 to maternal mRNA clearance in zebrafish.

Mishima Y, Tomari Y.

Genes Cells. 2017 Jul;22(7):670-678. doi: 10.1111/gtc.12504. Epub 2017 May 30.

14.

The poly(A) tail blocks RDR6 from converting self mRNAs into substrates for gene silencing.

Baeg K, Iwakawa HO, Tomari Y.

Nat Plants. 2017 Mar 20;3:17036. doi: 10.1038/nplants.2017.36.

PMID:
28319057
15.

ATP is dispensable for both miRNA- and Smaug-mediated deadenylation reactions.

Niinuma S, Tomari Y.

RNA. 2017 Jun;23(6):866-871. doi: 10.1261/rna.060764.117. Epub 2017 Mar 1.

16.

CCR4 and CAF1 deadenylases have an intrinsic activity to remove the post-poly(A) sequence.

Niinuma S, Fukaya T, Tomari Y.

RNA. 2016 Oct;22(10):1550-9. doi: 10.1261/rna.057679.116. Epub 2016 Aug 2.

17.

Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish.

Mishima Y, Tomari Y.

Mol Cell. 2016 Mar 17;61(6):874-85. doi: 10.1016/j.molcel.2016.02.027.

18.

Identification and Functional Analysis of the Pre-piRNA 3' Trimmer in Silkworms.

Izumi N, Shoji K, Sakaguchi Y, Honda S, Kirino Y, Suzuki T, Katsuma S, Tomari Y.

Cell. 2016 Feb 25;164(5):962-73. doi: 10.1016/j.cell.2016.01.008.

19.

The Functions of MicroRNAs: mRNA Decay and Translational Repression.

Iwakawa HO, Tomari Y.

Trends Cell Biol. 2015 Nov;25(11):651-665. doi: 10.1016/j.tcb.2015.07.011. Epub 2015 Oct 1. Review.

PMID:
26437588
20.

RISC assembly: Coordination between small RNAs and Argonaute proteins.

Kobayashi H, Tomari Y.

Biochim Biophys Acta. 2016 Jan;1859(1):71-81. doi: 10.1016/j.bbagrm.2015.08.007. Epub 2015 Aug 22. Review.

PMID:
26303205
21.

Cryptic RNA-binding by PRC2 components EZH2 and SUZ12.

Betancur JG, Tomari Y.

RNA Biol. 2015;12(9):959-65. doi: 10.1080/15476286.2015.1069463.

22.

Single-Molecule Analysis of the Target Cleavage Reaction by the Drosophila RNAi Enzyme Complex.

Yao C, Sasaki HM, Ueda T, Tomari Y, Tadakuma H.

Mol Cell. 2015 Jul 2;59(1):125-32. doi: 10.1016/j.molcel.2015.05.015.

23.

Corrigendum: Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins.

Izumi N, Kawaoka S, Yasuhara S, Suzuki Y, Sugano S, Katsuma S, Tomari Y.

RNA. 2015 Jun;21(6):1217. No abstract available.

24.

Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex.

Iwasaki S, Sasaki HM, Sakaguchi Y, Suzuki T, Tadakuma H, Tomari Y.

Nature. 2015 May 28;521(7553):533-6. doi: 10.1038/nature14254. Epub 2015 Mar 30.

PMID:
25822791
25.

My encounter with RNA.

Tomari Y.

RNA. 2015 Apr;21(4):747-8. doi: 10.1261/rna.050278.115. No abstract available.

26.

The initial uridine of primary piRNAs does not create the tenth adenine that Is the hallmark of secondary piRNAs.

Wang W, Yoshikawa M, Han BW, Izumi N, Tomari Y, Weng Z, Zamore PD.

Mol Cell. 2014 Dec 4;56(5):708-16. doi: 10.1016/j.molcel.2014.10.016. Epub 2014 Nov 20.

27.

MicroRNAs block assembly of eIF4F translation initiation complex in Drosophila.

Fukaya T, Iwakawa HO, Tomari Y.

Mol Cell. 2014 Oct 2;56(1):67-78. doi: 10.1016/j.molcel.2014.09.004.

28.

Elements and machinery of non-coding RNAs: toward their taxonomy.

Hirose T, Mishima Y, Tomari Y.

EMBO Rep. 2014 May;15(5):489-507. doi: 10.1002/embr.201338390. Epub 2014 Apr 14. Review.

29.

Diversity of the piRNA pathway for nonself silencing: worm-specific piRNA biogenesis factors.

Izumi N, Tomari Y.

Genes Dev. 2014 Apr 1;28(7):665-71. doi: 10.1101/gad.241323.114.

30.

Molecular insights into microRNA-mediated translational repression in plants.

Iwakawa HO, Tomari Y.

Mol Cell. 2013 Nov 21;52(4):591-601. doi: 10.1016/j.molcel.2013.10.033.

31.

Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs.

Yoda M, Cifuentes D, Izumi N, Sakaguchi Y, Suzuki T, Giraldez AJ, Tomari Y.

Cell Rep. 2013 Nov 14;5(3):715-26. doi: 10.1016/j.celrep.2013.09.029. Epub 2013 Oct 24.

32.

Making piRNAs in vitro.

Kawaoka S, Katsuma S, Tomari Y.

Methods Mol Biol. 2014;1093:35-46. doi: 10.1007/978-1-62703-694-8_4.

PMID:
24178555
33.

Arabidopsis ARGONAUTE7 selects miR390 through multiple checkpoints during RISC assembly.

Endo Y, Iwakawa HO, Tomari Y.

EMBO Rep. 2013 Jul;14(7):652-8. doi: 10.1038/embor.2013.73. Epub 2013 Jun 4.

34.

Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins.

Izumi N, Kawaoka S, Yasuhara S, Suzuki Y, Sugano S, Katsuma S, Tomari Y.

RNA. 2013 Jul;19(7):896-901. doi: 10.1261/rna.037200.112. Epub 2013 May 16. Erratum in: RNA. 2015 Jun;21(6):1217.

35.

The comprehensive epigenome map of piRNA clusters.

Kawaoka S, Hara K, Shoji K, Kobayashi M, Shimada T, Sugano S, Tomari Y, Suzuki Y, Katsuma S.

Nucleic Acids Res. 2013 Feb 1;41(3):1581-90. doi: 10.1093/nar/gks1275. Epub 2012 Dec 20.

36.

MicroRNAs mediate gene silencing via multiple different pathways in drosophila.

Fukaya T, Tomari Y.

Mol Cell. 2012 Dec 28;48(6):825-36. doi: 10.1016/j.molcel.2012.09.024. Epub 2012 Nov 1.

37.

miRNA-like duplexes as RNAi triggers with improved specificity.

Betancur JG, Yoda M, Tomari Y.

Front Genet. 2012 Jul 12;3:127. doi: 10.3389/fgene.2012.00127. eCollection 2012.

38.

The true core of RNA silencing revealed.

Sasaki HM, Tomari Y.

Nat Struct Mol Biol. 2012 Jul 5;19(7):657-60. doi: 10.1038/nsmb.2302. No abstract available.

PMID:
22767235
39.

Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3' untranslated region.

Iwakawa HO, Tajima Y, Taniguchi T, Kaido M, Mise K, Tomari Y, Taniguchi H, Okuno T.

J Virol. 2012 Aug;86(15):7836-49. doi: 10.1128/JVI.00538-12. Epub 2012 May 16.

40.

The N domain of Argonaute drives duplex unwinding during RISC assembly.

Kwak PB, Tomari Y.

Nat Struct Mol Biol. 2012 Jan 10;19(2):145-51. doi: 10.1038/nsmb.2232.

PMID:
22233755
41.

A role for transcription from a piRNA cluster in de novo piRNA production.

Kawaoka S, Mitsutake H, Kiuchi T, Kobayashi M, Yoshikawa M, Suzuki Y, Sugano S, Shimada T, Kobayashi J, Tomari Y, Katsuma S.

RNA. 2012 Feb;18(2):265-73. doi: 10.1261/rna.029777.111. Epub 2011 Dec 22.

42.

PABP is not essential for microRNA-mediated translational repression and deadenylation in vitro.

Fukaya T, Tomari Y.

EMBO J. 2011 Nov 25;30(24):4998-5009. doi: 10.1038/emboj.2011.426.

43.

Dicer is dispensable for asymmetric RISC loading in mammals.

Betancur JG, Tomari Y.

RNA. 2012 Jan;18(1):24-30. doi: 10.1261/rna.029785.111. Epub 2011 Nov 21.

44.

The silkworm W chromosome is a source of female-enriched piRNAs.

Kawaoka S, Kadota K, Arai Y, Suzuki Y, Fujii T, Abe H, Yasukochi Y, Mita K, Sugano S, Shimizu K, Tomari Y, Shimada T, Katsuma S.

RNA. 2011 Dec;17(12):2144-51. doi: 10.1261/rna.027565.111. Epub 2011 Oct 21.

45.

Recognition of the pre-miRNA structure by Drosophila Dicer-1.

Tsutsumi A, Kawamata T, Izumi N, Seitz H, Tomari Y.

Nat Struct Mol Biol. 2011 Sep 18;18(10):1153-8. doi: 10.1038/nsmb.2125.

PMID:
21926993
46.

3' end formation of PIWI-interacting RNAs in vitro.

Kawaoka S, Izumi N, Katsuma S, Tomari Y.

Mol Cell. 2011 Sep 16;43(6):1015-22. doi: 10.1016/j.molcel.2011.07.029.

47.

Multilayer checkpoints for microRNA authenticity during RISC assembly.

Kawamata T, Yoda M, Tomari Y.

EMBO Rep. 2011 Sep 1;12(9):944-9. doi: 10.1038/embor.2011.128.

48.

Zygotic amplification of secondary piRNAs during silkworm embryogenesis.

Kawaoka S, Arai Y, Kadota K, Suzuki Y, Hara K, Sugano S, Shimizu K, Tomari Y, Shimada T, Katsuma S.

RNA. 2011 Jul;17(7):1401-7. doi: 10.1261/rna.2709411. Epub 2011 May 31.

49.

Native gel analysis for RISC assembly.

Kawamata T, Tomari Y.

Methods Mol Biol. 2011;725:91-105. doi: 10.1007/978-1-61779-046-1_7.

PMID:
21528449
50.

Diazirine-containing RNA photocrosslinking probes for the study of siRNA-protein interactions.

Kuboe S, Yoda M, Ogata A, Kitade Y, Tomari Y, Ueno Y.

Chem Commun (Camb). 2010 Oct 21;46(39):7367-9. doi: 10.1039/c0cc02450c. Epub 2010 Sep 6.

PMID:
20820540

Supplemental Content

Loading ...
Support Center