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Items: 17

1.

Human genetic variation and the gut microbiome in disease.

Hall AB, Tolonen AC, Xavier RJ.

Nat Rev Genet. 2017 Nov;18(11):690-699. doi: 10.1038/nrg.2017.63. Epub 2017 Aug 21. Review.

PMID:
28824167
2.

Dissecting the human microbiome with single-cell genomics.

Tolonen AC, Xavier RJ.

Genome Med. 2017 Jun 14;9(1):56. doi: 10.1186/s13073-017-0448-7. Review.

3.

Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics.

Cerisy T, Souterre T, Torres-Romero I, Boutard M, Dubois I, Patrouix J, Labadie K, Berrabah W, Salanoubat M, Doring V, Tolonen AC.

Appl Environ Microbiol. 2017 May 17;83(11). pii: e00289-17. doi: 10.1128/AEM.00289-17. Print 2017 Jun 1.

4.

Global repositioning of transcription start sites in a plant-fermenting bacterium.

Boutard M, Ettwiller L, Cerisy T, Alberti A, Labadie K, Salanoubat M, Schildkraut I, Tolonen AC.

Nat Commun. 2016 Dec 16;7:13783. doi: 10.1038/ncomms13783.

5.

Physiology, Genomics, and Pathway Engineering of an Ethanol-Tolerant Strain of Clostridium phytofermentans.

Tolonen AC, Zuroff TR, Ramya M, Boutard M, Cerisy T, Curtis WR.

Appl Environ Microbiol. 2015 Aug 15;81(16):5440-8. doi: 10.1128/AEM.00619-15. Epub 2015 Jun 5.

6.

Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.

Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, Lau J, Schnell DJ, Church GM, Leschine SB, Blanchard JL.

PLoS One. 2015 Jun 2;10(6):e0118285. doi: 10.1371/journal.pone.0118285. eCollection 2015.

7.

Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass.

Boutard M, Cerisy T, Nogue PY, Alberti A, Weissenbach J, Salanoubat M, Tolonen AC.

PLoS Genet. 2014 Nov 13;10(11):e1004773. doi: 10.1371/journal.pgen.1004773. eCollection 2014 Nov.

8.

Quantitative proteomics using reductive dimethylation for stable isotope labeling.

Tolonen AC, Haas W.

J Vis Exp. 2014 Jul 1;(89). doi: 10.3791/51416.

9.

Fungal lysis by a soil bacterium fermenting cellulose.

Tolonen AC, Cerisy T, El-Sayyed H, Boutard M, Salanoubat M, Church GM.

Environ Microbiol. 2015 Aug;17(8):2618-27. doi: 10.1111/1462-2920.12495. Epub 2014 May 25.

PMID:
24798076
10.

Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.

Isaacs FJ, Carr PA, Wang HH, Lajoie MJ, Sterling B, Kraal L, Tolonen AC, Gianoulis TA, Goodman DB, Reppas NB, Emig CJ, Bang D, Hwang SJ, Jewett MC, Jacobson JM, Church GM.

Science. 2011 Jul 15;333(6040):348-53. doi: 10.1126/science.1205822.

11.

Proteome-wide systems analysis of a cellulosic biofuel-producing microbe.

Tolonen AC, Haas W, Chilaka AC, Aach J, Gygi SP, Church GM.

Mol Syst Biol. 2011 Jan 18;7:461. doi: 10.1038/msb.2010.116.

12.

Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367.

Tolonen AC, Chilaka AC, Church GM.

Mol Microbiol. 2009 Dec;74(6):1300-13. doi: 10.1111/j.1365-2958.2009.06890.x. Epub 2009 Sep 22.

13.
14.

Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability.

Tolonen AC, Aach J, Lindell D, Johnson ZI, Rector T, Steen R, Church GM, Chisholm SW.

Mol Syst Biol. 2006;2:53. Epub 2006 Oct 3.

15.

Transfer of photosynthesis genes to and from Prochlorococcus viruses.

Lindell D, Sullivan MB, Johnson ZI, Tolonen AC, Rohwer F, Chisholm SW.

Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11013-8. Epub 2004 Jul 15.

16.

DAF-16 target genes that control C. elegans life-span and metabolism.

Lee SS, Kennedy S, Tolonen AC, Ruvkun G.

Science. 2003 Apr 25;300(5619):644-7. Epub 2003 Apr 10.

17.

Optimized in situ construction of oligomers on an array surface.

Tolonen AC, Albeanu DF, Corbett JF, Handley H, Henson C, Malik P.

Nucleic Acids Res. 2002 Oct 15;30(20):e107.

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