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Items: 21


Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease.

Fornelos N, Franzosa EA, Bishai J, Annand JW, Oka A, Lloyd-Price J, Arthur TD, Garner A, Avila-Pacheco J, Haiser HJ, Tolonen AC, Porter JA, Clish CB, Sartor RB, Huttenhower C, Vlamakis H, Xavier RJ.

Nat Microbiol. 2020 Jan 20. doi: 10.1038/s41564-019-0655-7. [Epub ahead of print]


A Targetron-Recombinase System for Large-Scale Genome Engineering of Clostridia.

Cerisy T, Rostain W, Chhun A, Boutard M, Salanoubat M, Tolonen AC.

mSphere. 2019 Dec 11;4(6). pii: e00710-19. doi: 10.1128/mSphere.00710-19.


ABC Transporters Required for Hexose Uptake by Clostridium phytofermentans.

Cerisy T, Iglesias A, Rostain W, Boutard M, Pelle C, Perret A, Salanoubat M, Fierobe HP, Tolonen AC.

J Bacteriol. 2019 Jul 10;201(15). pii: e00241-19. doi: 10.1128/JB.00241-19. Print 2019 Aug 1.


Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut.

Jiang X, Hall AB, Arthur TD, Plichta DR, Covington CT, Poyet M, Crothers J, Moses PL, Tolonen AC, Vlamakis H, Alm EJ, Xavier RJ.

Science. 2019 Jan 11;363(6423):181-187. doi: 10.1126/science.aau5238.


Human genetic variation and the gut microbiome in disease.

Hall AB, Tolonen AC, Xavier RJ.

Nat Rev Genet. 2017 Nov;18(11):690-699. doi: 10.1038/nrg.2017.63. Epub 2017 Aug 21. Review.


Dissecting the human microbiome with single-cell genomics.

Tolonen AC, Xavier RJ.

Genome Med. 2017 Jun 14;9(1):56. doi: 10.1186/s13073-017-0448-7. Review.


Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics.

Cerisy T, Souterre T, Torres-Romero I, Boutard M, Dubois I, Patrouix J, Labadie K, Berrabah W, Salanoubat M, Doring V, Tolonen AC.

Appl Environ Microbiol. 2017 May 17;83(11). pii: e00289-17. doi: 10.1128/AEM.00289-17. Print 2017 Jun 1.


Global repositioning of transcription start sites in a plant-fermenting bacterium.

Boutard M, Ettwiller L, Cerisy T, Alberti A, Labadie K, Salanoubat M, Schildkraut I, Tolonen AC.

Nat Commun. 2016 Dec 16;7:13783. doi: 10.1038/ncomms13783.


Physiology, Genomics, and Pathway Engineering of an Ethanol-Tolerant Strain of Clostridium phytofermentans.

Tolonen AC, Zuroff TR, Ramya M, Boutard M, Cerisy T, Curtis WR.

Appl Environ Microbiol. 2015 Aug 15;81(16):5440-8. doi: 10.1128/AEM.00619-15. Epub 2015 Jun 5.


Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.

Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, Lau J, Schnell DJ, Church GM, Leschine SB, Blanchard JL.

PLoS One. 2015 Jun 2;10(6):e0118285. doi: 10.1371/journal.pone.0118285. eCollection 2015.


Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass.

Boutard M, Cerisy T, Nogue PY, Alberti A, Weissenbach J, Salanoubat M, Tolonen AC.

PLoS Genet. 2014 Nov 13;10(11):e1004773. doi: 10.1371/journal.pgen.1004773. eCollection 2014 Nov.


Quantitative proteomics using reductive dimethylation for stable isotope labeling.

Tolonen AC, Haas W.

J Vis Exp. 2014 Jul 1;(89). doi: 10.3791/51416.


Fungal lysis by a soil bacterium fermenting cellulose.

Tolonen AC, Cerisy T, El-Sayyed H, Boutard M, Salanoubat M, Church GM.

Environ Microbiol. 2015 Aug;17(8):2618-27. doi: 10.1111/1462-2920.12495. Epub 2014 May 25.


Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.

Isaacs FJ, Carr PA, Wang HH, Lajoie MJ, Sterling B, Kraal L, Tolonen AC, Gianoulis TA, Goodman DB, Reppas NB, Emig CJ, Bang D, Hwang SJ, Jewett MC, Jacobson JM, Church GM.

Science. 2011 Jul 15;333(6040):348-53. doi: 10.1126/science.1205822.


Proteome-wide systems analysis of a cellulosic biofuel-producing microbe.

Tolonen AC, Haas W, Chilaka AC, Aach J, Gygi SP, Church GM.

Mol Syst Biol. 2011 Jan 18;7:461. doi: 10.1038/msb.2010.116.


Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367.

Tolonen AC, Chilaka AC, Church GM.

Mol Microbiol. 2009 Dec;74(6):1300-13. doi: 10.1111/j.1365-2958.2009.06890.x. Epub 2009 Sep 22.


Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability.

Tolonen AC, Aach J, Lindell D, Johnson ZI, Rector T, Steen R, Church GM, Chisholm SW.

Mol Syst Biol. 2006;2:53. Epub 2006 Oct 3.


Transfer of photosynthesis genes to and from Prochlorococcus viruses.

Lindell D, Sullivan MB, Johnson ZI, Tolonen AC, Rohwer F, Chisholm SW.

Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11013-8. Epub 2004 Jul 15.


DAF-16 target genes that control C. elegans life-span and metabolism.

Lee SS, Kennedy S, Tolonen AC, Ruvkun G.

Science. 2003 Apr 25;300(5619):644-7. Epub 2003 Apr 10.


Optimized in situ construction of oligomers on an array surface.

Tolonen AC, Albeanu DF, Corbett JF, Handley H, Henson C, Malik P.

Nucleic Acids Res. 2002 Oct 15;30(20):e107.

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