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Defining the RNA interactome by total RNA-associated protein purification.

Shchepachev V, Bresson S, Spanos C, Petfalski E, Fischer L, Rappsilber J, Tollervey D.

Mol Syst Biol. 2019 Apr 8;15(4):e8689. doi: 10.15252/msb.20188689.


Molecular interactions between Hel2 and RNA supporting ribosome-associated quality control.

Winz ML, Peil L, Turowski TW, Rappsilber J, Tollervey D.

Nat Commun. 2019 Feb 4;10(1):563. doi: 10.1038/s41467-019-08382-z.


Mapping targets for small nucleolar RNAs in yeast.

Dudnakova T, Dunn-Davies H, Peters R, Tollervey D.

Version 2. Wellcome Open Res. 2018 Nov 22 [revised 2018 Jan 1];3:120. doi: 10.12688/wellcomeopenres.14735.2. eCollection 2018.


Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria.

Tree JJ, Gerdes K, Tollervey D.

Methods Enzymol. 2018;612:467-488. doi: 10.1016/bs.mie.2018.08.009. Epub 2018 Sep 22.


HuD Is a Neural Translation Enhancer Acting on mTORC1-Responsive Genes and Counteracted by the Y3 Small Non-coding RNA.

Tebaldi T, Zuccotti P, Peroni D, Köhn M, Gasperini L, Potrich V, Bonazza V, Dudnakova T, Rossi A, Sanguinetti G, Conti L, Macchi P, D'Agostino V, Viero G, Tollervey D, Hüttelmaier S, Quattrone A.

Mol Cell. 2018 Jul 19;71(2):256-270.e10. doi: 10.1016/j.molcel.2018.06.032.


Tailing Off: PABP and CNOT Generate Cycles of mRNA Deadenylation.

Bresson S, Tollervey D.

Mol Cell. 2018 Jun 21;70(6):987-988. doi: 10.1016/j.molcel.2018.06.009.


Ribosome maturation by the endoribonuclease YbeY stabilizes a type 3 secretion system transcript required for virulence of enterohemorrhagic Escherichia coli.

McAteer SP, Sy BM, Wong JL, Tollervey D, Gally DL, Tree JJ.

J Biol Chem. 2018 Jun 8;293(23):9006-9016. doi: 10.1074/jbc.RA117.000300. Epub 2018 Apr 20.


Surveillance-ready transcription: nuclear RNA decay as a default fate.

Bresson S, Tollervey D.

Open Biol. 2018 Mar;8(3). pii: 170270. doi: 10.1098/rsob.170270. Review.


High-Resolution, High-Throughput Analysis of Hfq-Binding Sites Using UV Crosslinking and Analysis of cDNA (CRAC).

Sy B, Wong J, Granneman S, Tollervey D, Gally D, Tree JJ.

Methods Mol Biol. 2018;1737:251-272. doi: 10.1007/978-1-4939-7634-8_15.


An RNA-dependent mechanism for transient expression of bacterial translocation filaments.

Wang D, McAteer SP, Wawszczyk AB, Russell CD, Tahoun A, Elmi A, Cockroft SL, Tollervey D, Granneman S, Tree JJ, Gally DL.

Nucleic Acids Res. 2018 Apr 20;46(7):3366-3381. doi: 10.1093/nar/gky096.


Immunoprecipitation of RNA:DNA Hybrids from Budding Yeast.

El Hage A, Tollervey D.

Methods Mol Biol. 2018;1703:109-129. doi: 10.1007/978-1-4939-7459-7_8.


RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit.

Milligan L, Sayou C, Tuck A, Auchynnikava T, Reid JE, Alexander R, Alves FL, Allshire R, Spanos C, Rappsilber J, Beggs JD, Kudla G, Tollervey D.

Elife. 2017 Oct 13;6. pii: e27082. doi: 10.7554/eLife.27082.


RNA substrate length as an indicator of exosome interactions in vivo.

Delan-Forino C, Schneider C, Tollervey D.

Wellcome Open Res. 2017 Jul 3;2:34. doi: 10.12688/wellcomeopenres.10724.2. eCollection 2017.


RNA Binding by Histone Methyltransferases Set1 and Set2.

Sayou C, Millán-Zambrano G, Santos-Rosa H, Petfalski E, Robson S, Houseley J, Kouzarides T, Tollervey D.

Mol Cell Biol. 2017 Jun 29;37(14). pii: e00165-17. doi: 10.1128/MCB.00165-17. Print 2017 Jul 15.


Transcriptome-wide analysis of alternative routes for RNA substrates into the exosome complex.

Delan-Forino C, Schneider C, Tollervey D.

PLoS Genet. 2017 Mar 29;13(3):e1006699. doi: 10.1371/journal.pgen.1006699. eCollection 2017 Mar.


Transcription factor Wilms' tumor 1 regulates developmental RNAs through 3' UTR interaction.

Bharathavikru R, Dudnakova T, Aitken S, Slight J, Artibani M, Hohenstein P, Tollervey D, Hastie N.

Genes Dev. 2017 Feb 15;31(4):347-352. doi: 10.1101/gad.291500.116. Epub 2017 Mar 13.


Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast.

Bresson S, Tuck A, Staneva D, Tollervey D.

Mol Cell. 2017 Mar 2;65(5):787-800.e5. doi: 10.1016/j.molcel.2017.01.005. Epub 2017 Feb 9.


Transcription by RNA polymerase III: insights into mechanism and regulation.

Turowski TW, Tollervey D.

Biochem Soc Trans. 2016 Oct 15;44(5):1367-1375. Review.


Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.

Waters SA, McAteer SP, Kudla G, Pang I, Deshpande NP, Amos TG, Leong KW, Wilkins MR, Strugnell R, Gally DL, Tollervey D, Tree JJ.

EMBO J. 2017 Feb 1;36(3):374-387. doi: 10.15252/embj.201694639. Epub 2016 Nov 11.


VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation.

Winther K, Tree JJ, Tollervey D, Gerdes K.

Nucleic Acids Res. 2016 Nov 16;44(20):9860-9871. Epub 2016 Sep 5.


The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.

Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C.

Nucleic Acids Res. 2016 Oct 14;44(18):9016. Epub 2016 Jul 14. No abstract available.


UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly.

Hunziker M, Barandun J, Petfalski E, Tan D, Delan-Forino C, Molloy KR, Kim KH, Dunn-Davies H, Shi Y, Chaker-Margot M, Chait BT, Walz T, Tollervey D, Klinge S.

Nat Commun. 2016 Jun 29;7:12090. doi: 10.1038/ncomms12090.


Strand-specific, high-resolution mapping of modified RNA polymerase II.

Milligan L, Huynh-Thu VA, Delan-Forino C, Tuck A, Petfalski E, Lombraña R, Sanguinetti G, Kudla G, Tollervey D.

Mol Syst Biol. 2016 Jun 10;12(6):874. doi: 10.15252/msb.20166869.


Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases.

McCaughan UM, Jayachandran U, Shchepachev V, Chen ZA, Rappsilber J, Tollervey D, Cook AG.

Nat Commun. 2016 Jun 2;7:11789. doi: 10.1038/ncomms11789.


Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts.

Turowski TW, Leśniewska E, Delan-Forino C, Sayou C, Boguta M, Tollervey D.

Genome Res. 2016 Jul;26(7):933-44. doi: 10.1101/gr.205492.116. Epub 2016 May 20.


Network of epistatic interactions within a yeast snoRNA.

Puchta O, Cseke B, Czaja H, Tollervey D, Sanguinetti G, Kudla G.

Science. 2016 May 13;352(6287):840-4. doi: 10.1126/science.aaf0965. Epub 2016 Apr 14. Erratum in: Science. 2016 May 6;352(6286). pii: aaf9112. doi: 10.1126/science.aaf9112.


The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.

Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C.

Nucleic Acids Res. 2016 Jun 20;44(11):5399-409. doi: 10.1093/nar/gkw213. Epub 2016 Mar 31. Erratum in: Nucleic Acids Res. 2016 Oct 14;44(18):9016.


Lower third molar surgery - consent and coronectomy.

Williams M, Tollervey D.

Br Dent J. 2016 Mar 25;220(6):287-8. doi: 10.1038/sj.bdj.2016.217.


Motoring toward pre-60S-ribosome export.

Shchepachev V, Tollervey D.

Nat Struct Mol Biol. 2016 Jan;23(1):3-4. doi: 10.1038/nsmb.3154. No abstract available.


Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough.

Holmes RK, Tuck AC, Zhu C, Dunn-Davies HR, Kudla G, Clauder-Munster S, Granneman S, Steinmetz LM, Guthrie C, Tollervey D.

PLoS Genet. 2015 Dec 22;11(12):e1005735. doi: 10.1371/journal.pgen.1005735. eCollection 2015 Dec.


Identification of miRNA-Target RNA Interactions Using CLASH.

Helwak A, Tollervey D.

Methods Mol Biol. 2016;1358:229-51. doi: 10.1007/978-1-4939-3067-8_14.


A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.

Baßler J, Paternoga H, Holdermann I, Thoms M, Granneman S, Barrio-Garcia C, Nyarko A, Lee W, Stier G, Clark SA, Schraivogel D, Kallas M, Beckmann R, Tollervey D, Barbar E, Sinning I, Hurt E.

J Cell Biol. 2015 Jul 6;210(1):169-70. doi: 10.1083/jcb.20140811106112015c. No abstract available.


RNA surveillance and the exosome.

Tollervey D.

RNA. 2015 Apr;21(4):492-3. doi: 10.1261/rna.050989.115. No abstract available.


The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot.

Sardana R, Liu X, Granneman S, Zhu J, Gill M, Papoulas O, Marcotte EM, Tollervey D, Correll CC, Johnson AW.

PLoS Biol. 2015 Feb 24;13(2):e1002083. doi: 10.1371/journal.pbio.1002083. eCollection 2015 Feb.


A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.

Baßler J, Paternoga H, Holdermann I, Thoms M, Granneman S, Barrio-Garcia C, Nyarko A, Lee W, Stier G, Clark SA, Schraivogel D, Kallas M, Beckmann R, Tollervey D, Barbar E, Sinning I, Hurt E.

J Cell Biol. 2014 Nov 24;207(4):481-98. doi: 10.1083/jcb.201408111. Epub 2014 Nov 17. Erratum in: J Cell Biol. 2015 Jul 6;210(1):169-70. Lee, Woonghee [added].


Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria.

El Hage A, Webb S, Kerr A, Tollervey D.

PLoS Genet. 2014 Oct 30;10(10):e1004716. doi: 10.1371/journal.pgen.1004716. eCollection 2014 Oct.


Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits.

Turowski TW, Lebaron S, Zhang E, Peil L, Dudnakova T, Petfalski E, Granneman S, Rappsilber J, Tollervey D.

Nucleic Acids Res. 2014 Oct 29;42(19):12189-99. doi: 10.1093/nar/gku878. Epub 2014 Oct 7.


Lighting Up pre-mRNA recognition.

Delan-Forino C, Tollervey D.

Mol Cell. 2014 Sep 4;55(5):649-51. doi: 10.1016/j.molcel.2014.08.021.


Cotranscriptional events in eukaryotic ribosome synthesis.

Turowski TW, Tollervey D.

Wiley Interdiscip Rev RNA. 2015 Jan-Feb;6(1):129-39. doi: 10.1002/wrna.1263. Epub 2014 Aug 29. Review.


Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery.

Leung E, Schneider C, Yan F, Mohi-El-Din H, Kudla G, Tuck A, Wlotzka W, Doronina VA, Bartley R, Watkins NJ, Tollervey D, Brown JD.

Nucleic Acids Res. 2014;42(16):10698-710. doi: 10.1093/nar/gku761. Epub 2014 Aug 26.


Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli.

Tree JJ, Granneman S, McAteer SP, Tollervey D, Gally DL.

Mol Cell. 2014 Jul 17;55(2):199-213. doi: 10.1016/j.molcel.2014.05.006. Epub 2014 Jun 5.


Ki-67 is a PP1-interacting protein that organises the mitotic chromosome periphery.

Booth DG, Takagi M, Sanchez-Pulido L, Petfalski E, Vargiu G, Samejima K, Imamoto N, Ponting CP, Tollervey D, Earnshaw WC, Vagnarelli P.

Elife. 2014 May 27;3:e01641. doi: 10.7554/eLife.01641.


RNA mimicry by the fap7 adenylate kinase in ribosome biogenesis.

Loc'h J, Blaud M, Réty S, Lebaron S, Deschamps P, Bareille J, Jombart J, Robert-Paganin J, Delbos L, Chardon F, Zhang E, Charenton C, Tollervey D, Leulliot N.

PLoS Biol. 2014 May 13;12(5):e1001860. doi: 10.1371/journal.pbio.1001860. eCollection 2014 May.


Final pre-40S maturation depends on the functional integrity of the 60S subunit ribosomal protein L3.

García-Gómez JJ, Fernández-Pevida A, Lebaron S, Rosado IV, Tollervey D, Kressler D, de la Cruz J.

PLoS Genet. 2014 Mar 6;10(3):e1004205. doi: 10.1371/journal.pgen.1004205. eCollection 2014 Mar.


Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH).

Helwak A, Tollervey D.

Nat Protoc. 2014 Mar;9(3):711-28. doi: 10.1038/nprot.2014.043. Epub 2014 Feb 27.


A new system for naming ribosomal proteins.

Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, Ramakrishnan V, Spahn CM, Steitz TA, Tchorzewski M, Tollervey D, Warren AJ, Williamson JR, Wilson D, Yonath A, Yusupov M.

Curr Opin Struct Biol. 2014 Feb;24:165-9. doi: 10.1016/ Epub 2014 Feb 10. Review.


Kinetic analysis demonstrates a requirement for the Rat1 exonuclease in cotranscriptional pre-rRNA cleavage.

Axt K, French SL, Beyer AL, Tollervey D.

PLoS One. 2014 Feb 3;9(2):e85703. doi: 10.1371/journal.pone.0085703. eCollection 2014.


Looking into the barrel of the RNA exosome.

Schneider C, Tollervey D.

Nat Struct Mol Biol. 2014 Jan;21(1):17-8. doi: 10.1038/nsmb.2750. No abstract available.


Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export.

Matsuo Y, Granneman S, Thoms M, Manikas RG, Tollervey D, Hurt E.

Nature. 2014 Jan 2;505(7481):112-116. doi: 10.1038/nature12731. Epub 2013 Nov 17.


Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly.

Lebaron S, Segerstolpe A, French SL, Dudnakova T, de Lima Alves F, Granneman S, Rappsilber J, Beyer AL, Wieslander L, Tollervey D.

Mol Cell. 2013 Dec 12;52(5):707-19. doi: 10.1016/j.molcel.2013.10.017. Epub 2013 Nov 14.

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