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Items: 19

1.

New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies.

Qi W, Colarusso A, Olombrada M, Parrilli E, Patrignani A, Tutino ML, Toll-Riera M.

Sci Rep. 2019 Nov 11;9(1):16444. doi: 10.1038/s41598-019-52832-z.

2.

Integrative analysis of fitness and metabolic effects of plasmids in Pseudomonas aeruginosa PAO1.

San Millan A, Toll-Riera M, Qi Q, Betts A, Hopkinson RJ, McCullagh J, MacLean RC.

ISME J. 2018 Dec;12(12):3014-3024. doi: 10.1038/s41396-018-0224-8. Epub 2018 Aug 10.

3.

Mistranslation can enhance fitness through purging of deleterious mutations.

Bratulic S, Toll-Riera M, Wagner A.

Nat Commun. 2017 May 19;8:15410. doi: 10.1038/ncomms15410.

4.

Epistatic interactions between ancestral genotype and beneficial mutations shape evolvability in Pseudomonas aeruginosa.

Gifford DR, Toll-Riera M, MacLean RC.

Evolution. 2016 Jul;70(7):1659-66. doi: 10.1111/evo.12958. Epub 2016 Jun 15.

PMID:
27230588
5.

The Genomic Basis of Evolutionary Innovation in Pseudomonas aeruginosa.

Toll-Riera M, San Millan A, Wagner A, MacLean RC.

PLoS Genet. 2016 May 5;12(5):e1006005. doi: 10.1371/journal.pgen.1006005. eCollection 2016 May.

6.

The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa.

Qi Q, Toll-Riera M, Heilbron K, Preston GM, MacLean RC.

Proc Biol Sci. 2016 Jan 13;283(1822). pii: 20152452. doi: 10.1098/rspb.2015.2452.

7.

Sequencing of plasmids pAMBL1 and pAMBL2 from Pseudomonas aeruginosa reveals a blaVIM-1 amplification causing high-level carbapenem resistance.

San Millan A, Toll-Riera M, Escudero JA, Cantón R, Coque TM, MacLean RC.

J Antimicrob Chemother. 2015 Nov;70(11):3000-3. doi: 10.1093/jac/dkv222. Epub 2015 Jul 24.

8.

Here's to the losers: evolvable residents accelerate the evolution of high-fitness invaders.

Gifford DR, Toll-Riera M, Kojadinovic M, MacLean RC.

Am Nat. 2015 Jul;186(1):41-9. doi: 10.1086/681598. Epub 2015 May 12.

9.

Interactions between horizontally acquired genes create a fitness cost in Pseudomonas aeruginosa.

San Millan A, Toll-Riera M, Qi Q, MacLean RC.

Nat Commun. 2015 Apr 21;6:6845. doi: 10.1038/ncomms7845.

10.

Positive selection and compensatory adaptation interact to stabilize non-transmissible plasmids.

San Millan A, Peña-Miller R, Toll-Riera M, Halbert ZV, McLean AR, Cooper BS, MacLean RC.

Nat Commun. 2014 Oct 10;5:5208. doi: 10.1038/ncomms6208.

11.

Fitness is strongly influenced by rare mutations of large effect in a microbial mutation accumulation experiment.

Heilbron K, Toll-Riera M, Kojadinovic M, MacLean RC.

Genetics. 2014 Jul;197(3):981-90. doi: 10.1534/genetics.114.163147. Epub 2014 May 8.

12.

Emergence of novel domains in proteins.

Toll-Riera M, Albà MM.

BMC Evol Biol. 2013 Feb 20;13:47. doi: 10.1186/1471-2148-13-47.

13.

Structure and age jointly influence rates of protein evolution.

Toll-Riera M, Bostick D, Albà MM, Plotkin JB.

PLoS Comput Biol. 2012 May;8(5):e1002542. doi: 10.1371/journal.pcbi.1002542. Epub 2012 May 31.

14.

Sequence shortening in the rodent ancestor.

Laurie S, Toll-Riera M, Radó-Trilla N, Albà MM.

Genome Res. 2012 Mar;22(3):478-85. doi: 10.1101/gr.121897.111. Epub 2011 Nov 29.

15.

Role of low-complexity sequences in the formation of novel protein coding sequences.

Toll-Riera M, Radó-Trilla N, Martys F, Albà MM.

Mol Biol Evol. 2012 Mar;29(3):883-6. doi: 10.1093/molbev/msr263. Epub 2011 Oct 31.

PMID:
22045997
16.

Lineage-specific variation in intensity of natural selection in mammals.

Toll-Riera M, Laurie S, Albà MM.

Mol Biol Evol. 2011 Jan;28(1):383-98. doi: 10.1093/molbev/msq206. Epub 2010 Aug 5.

PMID:
20688808
17.

Natural selection drives the accumulation of amino acid tandem repeats in human proteins.

Mularoni L, Ledda A, Toll-Riera M, Albà MM.

Genome Res. 2010 Jun;20(6):745-54. doi: 10.1101/gr.101261.109. Epub 2010 Mar 24.

18.

Evolution of primate orphan proteins.

Toll-Riera M, Castelo R, Bellora N, Albà MM.

Biochem Soc Trans. 2009 Aug;37(Pt 4):778-82. doi: 10.1042/BST0370778. Review.

PMID:
19614593
19.

Origin of primate orphan genes: a comparative genomics approach.

Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol L, Estivill X, Albà MM.

Mol Biol Evol. 2009 Mar;26(3):603-12. doi: 10.1093/molbev/msn281. Epub 2008 Dec 8.

PMID:
19064677

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