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Engineering a Less Artificial Intelligence.

Sinz FH, Pitkow X, Reimer J, Bethge M, Tolias AS.

Neuron. 2019 Sep 25;103(6):967-979. doi: 10.1016/j.neuron.2019.08.034. Review.


The Visual Cortex in Context.

Froudarakis E, Fahey PG, Reimer J, Smirnakis SM, Tehovnik EJ, Tolias AS.

Annu Rev Vis Sci. 2019 Sep 15;5:317-339. doi: 10.1146/annurev-vision-091517-034407.


Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas.

Scala F, Kobak D, Shan S, Bernaerts Y, Laturnus S, Cadwell CR, Hartmanis L, Froudarakis E, Castro JR, Tan ZH, Papadopoulos S, Patel SS, Sandberg R, Berens P, Jiang X, Tolias AS.

Nat Commun. 2019 Sep 13;10(1):4174. doi: 10.1038/s41467-019-12058-z.


Target specific functions of EPL interneurons in olfactory circuits.

Liu G, Froudarakis E, Patel JM, Kochukov MY, Pekarek B, Hunt PJ, Patel M, Ung K, Fu CH, Jo J, Lee HK, Tolias AS, Arenkiel BR.

Nat Commun. 2019 Jul 29;10(1):3369. doi: 10.1038/s41467-019-11354-y.


Follicle-stimulating hormone and luteinizing hormone increase Ca2+ in the granulosa cells of mouse ovarian follicles†.

Egbert JR, Fahey PG, Reimer J, Owen CM, Evsikov AV, Nikolaev VO, Griesbeck O, Ray RS, Tolias AS, Jaffe LA.

Biol Reprod. 2019 Aug 1;101(2):433-444. doi: 10.1093/biolre/ioz085.


Deep convolutional models improve predictions of macaque V1 responses to natural images.

Cadena SA, Denfield GH, Walker EY, Gatys LA, Tolias AS, Bethge M, Ecker AS.

PLoS Comput Biol. 2019 Apr 23;15(4):e1006897. doi: 10.1371/journal.pcbi.1006897. eCollection 2019 Apr.


Faster processing of moving compared with flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion.

Subramaniyan M, Ecker AS, Patel SS, Cotton RJ, Bethge M, Pitkow X, Berens P, Tolias AS.

J Neurophysiol. 2018 Nov 1;120(5):2430-2452. doi: 10.1152/jn.00792.2017. Epub 2018 Aug 22.


Attentional fluctuations induce shared variability in macaque primary visual cortex.

Denfield GH, Ecker AS, Shinn TJ, Bethge M, Tolias AS.

Nat Commun. 2018 Jul 9;9(1):2654. doi: 10.1038/s41467-018-05123-6.


Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.

Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M.

PLoS Comput Biol. 2018 May 21;14(5):e1006157. doi: 10.1371/journal.pcbi.1006157. eCollection 2018 May.


Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq.

Cadwell CR, Scala F, Li S, Livrizzi G, Shen S, Sandberg R, Jiang X, Tolias AS.

Nat Protoc. 2017 Dec;12(12):2531-2553. doi: 10.1038/nprot.2017.120. Epub 2017 Nov 16.


Q&A: using Patch-seq to profile single cells.

Cadwell CR, Sandberg R, Jiang X, Tolias AS.

BMC Biol. 2017 Jul 6;15(1):58. doi: 10.1186/s12915-017-0396-0.


In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.

Ouzounov DG, Wang T, Wang M, Feng DD, Horton NG, Cruz-Hernández JC, Cheng YT, Reimer J, Tolias AS, Nishimura N, Xu C.

Nat Methods. 2017 Apr;14(4):388-390. doi: 10.1038/nmeth.4183. Epub 2017 Feb 20.


Developmental broadening of inhibitory sensory maps.

Quast KB, Ung K, Froudarakis E, Huang L, Herman I, Addison AP, Ortiz-Guzman J, Cordiner K, Saggau P, Tolias AS, Arenkiel BR.

Nat Neurosci. 2017 Feb;20(2):189-199. doi: 10.1038/nn.4467. Epub 2016 Dec 26.


Patterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics.

Segev E, Reimer J, Moreaux LC, Fowler TM, Chi D, Sacher WD, Lo M, Deisseroth K, Tolias AS, Faraon A, Roukes ML.

Neurophotonics. 2017 Jan;4(1):011002. Epub 2016 Dec 6.


Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex.

Reimer J, McGinley MJ, Liu Y, Rodenkirch C, Wang Q, McCormick DA, Tolias AS.

Nat Commun. 2016 Nov 8;7:13289. doi: 10.1038/ncomms13289.


Response to Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex".

Jiang X, Shen S, Sinz F, Reimer J, Cadwell CR, Berens P, Ecker AS, Patel S, Denfield GH, Froudarakis E, Li S, Walker E, Tolias AS.

Science. 2016 Sep 9;353(6304):1108. doi: 10.1126/science.aaf6102.


Investigating the Limits of Neurovascular Coupling.

Denfield GH, Fahey PG, Reimer J, Tolias AS.

Neuron. 2016 Sep 7;91(5):954-956. doi: 10.1016/j.neuron.2016.08.026.


Benchmarking Spike Rate Inference in Population Calcium Imaging.

Theis L, Berens P, Froudarakis E, Reimer J, Román Rosón M, Baden T, Euler T, Tolias AS, Bethge M.

Neuron. 2016 May 4;90(3):471-82. doi: 10.1016/j.neuron.2016.04.014.


Spike sorting for large, dense electrode arrays.

Rossant C, Kadir SN, Goodman DFM, Schulman J, Hunter MLD, Saleem AB, Grosmark A, Belluscio M, Denfield GH, Ecker AS, Tolias AS, Solomon S, Buzsaki G, Carandini M, Harris KD.

Nat Neurosci. 2016 Apr;19(4):634-641. doi: 10.1038/nn.4268. Epub 2016 Mar 14.


On the Structure of Neuronal Population Activity under Fluctuations in Attentional State.

Ecker AS, Denfield GH, Bethge M, Tolias AS.

J Neurosci. 2016 Feb 3;36(5):1775-89. doi: 10.1523/JNEUROSCI.2044-15.2016.


Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq.

Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R, Tolias AS.

Nat Biotechnol. 2016 Feb;34(2):199-203. doi: 10.1038/nbt.3445. Epub 2015 Dec 21.


Principles of connectivity among morphologically defined cell types in adult neocortex.

Jiang X, Shen S, Cadwell CR, Berens P, Sinz F, Ecker AS, Patel S, Tolias AS.

Science. 2015 Nov 27;350(6264):aac9462. doi: 10.1126/science.aac9462.


Waking State: Rapid Variations Modulate Neural and Behavioral Responses.

McGinley MJ, Vinck M, Reimer J, Batista-Brito R, Zagha E, Cadwell CR, Tolias AS, Cardin JA, McCormick DA.

Neuron. 2015 Sep 23;87(6):1143-1161. doi: 10.1016/j.neuron.2015.09.012. Review.


Random-Access Multiphoton Microscopy for Fast Three-Dimensional Imaging.

Reddy GD, Cotton RJ, Tolias AS, Saggau P.

Adv Exp Med Biol. 2015;859:455-72. doi: 10.1007/978-3-319-17641-3_18. Review.


Improved estimation and interpretation of correlations in neural circuits.

Yatsenko D, Josić K, Ecker AS, Froudarakis E, Cotton RJ, Tolias AS.

PLoS Comput Biol. 2015 Mar 31;11(3):e1004083. doi: 10.1371/journal.pcbi.1004083. eCollection 2015 Mar.


Pupil fluctuations track fast switching of cortical states during quiet wakefulness.

Reimer J, Froudarakis E, Cadwell CR, Yatsenko D, Denfield GH, Tolias AS.

Neuron. 2014 Oct 22;84(2):355-62. doi: 10.1016/j.neuron.2014.09.033. Epub 2014 Oct 22.


Is there signal in the noise?

Ecker AS, Tolias AS.

Nat Neurosci. 2014 Jun;17(6):750-1. doi: 10.1038/nn.3722. No abstract available.


Population code in mouse V1 facilitates readout of natural scenes through increased sparseness.

Froudarakis E, Berens P, Ecker AS, Cotton RJ, Sinz FH, Yatsenko D, Saggau P, Bethge M, Tolias AS.

Nat Neurosci. 2014 Jun;17(6):851-7. doi: 10.1038/nn.3707. Epub 2014 Apr 20.


State dependence of noise correlations in macaque primary visual cortex.

Ecker AS, Berens P, Cotton RJ, Subramaniyan M, Denfield GH, Cadwell CR, Smirnakis SM, Bethge M, Tolias AS.

Neuron. 2014 Apr 2;82(1):235-48. doi: 10.1016/j.neuron.2014.02.006.


Trial-to-trial, uncertainty-based adjustment of decision boundaries in visual categorization.

Qamar AT, Cotton RJ, George RG, Beck JM, Prezhdo E, Laudano A, Tolias AS, Ma WJ.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20332-7. doi: 10.1073/pnas.1219756110. Epub 2013 Nov 22.


Three-dimensional mapping of microcircuit correlation structure.

Cotton RJ, Froudarakis E, Storer P, Saggau P, Tolias AS.

Front Neural Circuits. 2013 Oct 10;7:151. doi: 10.3389/fncir.2013.00151. eCollection 2013.


Macaque monkeys perceive the flash lag illusion.

Subramaniyan M, Ecker AS, Berens P, Tolias AS.

PLoS One. 2013;8(3):e58788. doi: 10.1371/journal.pone.0058788. Epub 2013 Mar 19. Erratum in: PLoS One. 2013;8(4). doi:10.1371/annotation/2253d19d-1afb-4296-a4d2-ac84f1d808d0.


A fast and simple population code for orientation in primate V1.

Berens P, Ecker AS, Cotton RJ, Ma WJ, Bethge M, Tolias AS.

J Neurosci. 2012 Aug 1;32(31):10618-26.


Electrocorticography links human temporoparietal junction to visual perception.

Beauchamp MS, Sun P, Baum SH, Tolias AS, Yoshor D.

Nat Neurosci. 2012 Jun 3;15(7):957-9. doi: 10.1038/nn.3131.


The effect of noise correlations in populations of diversely tuned neurons.

Ecker AS, Berens P, Tolias AS, Bethge M.

J Neurosci. 2011 Oct 5;31(40):14272-83. doi: 10.1523/JNEUROSCI.2539-11.2011.


esfMRI of the upper STS: further evidence for the lack of electrically induced polysynaptic propagation of activity in the neocortex.

Sultan F, Augath M, Murayama Y, Tolias AS, Logothetis N.

Magn Reson Imaging. 2011 Dec;29(10):1374-81. doi: 10.1016/j.mri.2011.04.005. Epub 2011 Jul 14.


fMRI of the face-processing network in the ventral temporal lobe of awake and anesthetized macaques.

Ku SP, Tolias AS, Logothetis NK, Goense J.

Neuron. 2011 Apr 28;70(2):352-62. doi: 10.1016/j.neuron.2011.02.048.


Reassessing optimal neural population codes with neurometric functions.

Berens P, Ecker AS, Gerwinn S, Tolias AS, Bethge M.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4423-8. doi: 10.1073/pnas.1015904108. Epub 2011 Feb 28.


The role of the primary visual cortex in perceptual suppression of salient visual stimuli.

Keliris GA, Logothetis NK, Tolias AS.

J Neurosci. 2010 Sep 15;30(37):12353-65. doi: 10.1523/JNEUROSCI.0677-10.2010.


Decorrelated neuronal firing in cortical microcircuits.

Ecker AS, Berens P, Keliris GA, Bethge M, Logothetis NK, Tolias AS.

Science. 2010 Jan 29;327(5965):584-7. doi: 10.1126/science.1179867. Erratum in: Science. 2010 Apr 30;328(5978):569.


Microstimulation of visual cortex to restore vision.

Tehovnik EJ, Slocum WM, Smirnakis SM, Tolias AS.

Prog Brain Res. 2009;175:347-75. doi: 10.1016/S0079-6123(09)17524-6. Review.


Feature selectivity of the gamma-band of the local field potential in primate primary visual cortex.

Berens P, Keliris GA, Ecker AS, Logothetis NK, Tolias AS.

Front Neurosci. 2008 Dec 15;2(2):199-207. doi: 10.3389/neuro.01.037.2008. eCollection 2008 Dec.


Generating spike trains with specified correlation coefficients.

Macke JH, Berens P, Ecker AS, Tolias AS, Bethge M.

Neural Comput. 2009 Feb;21(2):397-423. doi: 10.1162/neco.2008.02-08-713.


Comparing the feature selectivity of the gamma-band of the local field potential and the underlying spiking activity in primate visual cortex.

Berens P, Keliris GA, Ecker AS, Logothetis NK, Tolias AS.

Front Syst Neurosci. 2008 Jun 17;2:2. doi: 10.3389/neuro.06.002.2008. eCollection 2008.


fMRI of the temporal lobe of the awake monkey at 7 T.

Goense JB, Ku SP, Merkle H, Tolias AS, Logothetis NK.

Neuroimage. 2008 Feb 1;39(3):1081-93. Epub 2007 Sep 29.


Recording chronically from the same neurons in awake, behaving primates.

Tolias AS, Ecker AS, Siapas AG, Hoenselaar A, Keliris GA, Logothetis NK.

J Neurophysiol. 2007 Dec;98(6):3780-90. Epub 2007 Oct 17.


Spatial specificity of BOLD versus cerebral blood volume fMRI for mapping cortical organization.

Smirnakis SM, Schmid MC, Weber B, Tolias AS, Augath M, Logothetis NK.

J Cereb Blood Flow Metab. 2007 Jun;27(6):1248-61. Epub 2007 Jan 10. Erratum in: J Cereb Blood Flow Metab. 2007 Jun;27(6):1290.


Direct and indirect activation of cortical neurons by electrical microstimulation.

Tehovnik EJ, Tolias AS, Sultan F, Slocum WM, Logothetis NK.

J Neurophysiol. 2006 Aug;96(2):512-21. Review.


Mapping cortical activity elicited with electrical microstimulation using FMRI in the macaque.

Tolias AS, Sultan F, Augath M, Oeltermann A, Tehovnik EJ, Schiller PH, Logothetis NK.

Neuron. 2005 Dec 22;48(6):901-11.


Lack of long-term cortical reorganization after macaque retinal lesions.

Smirnakis SM, Brewer AA, Schmid MC, Tolias AS, Schüz A, Augath M, Inhoffen W, Wandell BA, Logothetis NK.

Nature. 2005 May 19;435(7040):300-7.


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