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Items: 13

1.

The IRIDICA BAC BSI Assay: Rapid, Sensitive and Culture-Independent Identification of Bacteria and Candida in Blood.

Metzgar D, Frinder MW, Rothman RE, Peterson S, Carroll KC, Zhang SX, Avornu GD, Rounds MA, Carolan HE, Toleno DM, Moore D, Hall TA, Massire C, Richmond GS, Gutierrez JR, Sampath R, Ecker DJ, Blyn LB.

PLoS One. 2016 Jul 6;11(7):e0158186. doi: 10.1371/journal.pone.0158186. eCollection 2016.

2.

Improved sensitivity for molecular detection of bacterial and Candida infections in blood.

Bacconi A, Richmond GS, Baroldi MA, Laffler TG, Blyn LB, Carolan HE, Frinder MR, Toleno DM, Metzgar D, Gutierrez JR, Massire C, Rounds M, Kennel NJ, Rothman RE, Peterson S, Carroll KC, Wakefield T, Ecker DJ, Sampath R.

J Clin Microbiol. 2014 Sep;52(9):3164-74. doi: 10.1128/JCM.00801-14. Epub 2014 Jun 20.

3.

Enhanced diagnostic yields of bacteremia and candidemia in blood specimens by PCR-electrospray ionization mass spectrometry.

Laffler TG, Cummins LL, McClain CM, Quinn CD, Toro MA, Carolan HE, Toleno DM, Rounds MA, Eshoo MW, Stratton CW, Sampath R, Blyn LB, Ecker DJ, Tang YW.

J Clin Microbiol. 2013 Nov;51(11):3535-41. doi: 10.1128/JCM.00876-13. Epub 2013 Aug 21.

4.

PCR followed by electrospray ionization mass spectrometry for broad-range identification of fungal pathogens.

Massire C, Buelow DR, Zhang SX, Lovari R, Matthews HE, Toleno DM, Ranken RR, Hall TA, Metzgar D, Sampath R, Blyn LB, Ecker DJ, Gu Z, Walsh TJ, Hayden RT.

J Clin Microbiol. 2013 Mar;51(3):959-66. doi: 10.1128/JCM.02621-12. Epub 2013 Jan 9.

5.

Allele-specific PCR can improve the efficiency of experimental resolution of heterozygotes in resequencing studies.

Chen H, Morrell PL, Toleno DM, Lundy KE, Clegg MT.

Mol Ecol Resour. 2010 Jul;10(4):647-58. doi: 10.1111/j.1755-0998.2009.02804.x. Epub 2009 Dec 21.

PMID:
21565069
6.

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.

Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Deal KR, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo H, Huo N, Lazo GR, Luo MC, Ma YQ, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

BMC Genomics. 2010 Dec 14;11:702. doi: 10.1186/1471-2164-11-702.

7.

Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

Luo MC, Deal KR, Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo HY, Huo N, Lazo G, Ma Y, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15780-5. doi: 10.1073/pnas.0908195106. Epub 2009 Aug 26.

8.

Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.

Toleno DM, Renaud G, Wolfsberg TG, Islam M, Wildman DE, Siegmund KD, Hacia JG.

BMC Bioinformatics. 2009 Mar 5;10:77. doi: 10.1186/1471-2105-10-77.

9.

mtDNA depletion confers specific gene expression profiles in human cells grown in culture and in xenograft.

Magda D, Lecane P, Prescott J, Thiemann P, Ma X, Dranchak PK, Toleno DM, Ramaswamy K, Siegmund KD, Hacia JG.

BMC Genomics. 2008 Nov 3;9:521. doi: 10.1186/1471-2164-9-521.

10.

Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations.

Toleno DM, Morrell PL, Clegg MT.

Bioinformatics. 2007 Jul 15;23(14):1807-14. Epub 2007 May 17.

PMID:
17510172
11.

Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity.

Morrell PL, Toleno DM, Lundy KE, Clegg MT.

Genetics. 2006 Jul;173(3):1705-23. Epub 2006 Apr 19.

12.

Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization.

Morrell PL, Toleno DM, Lundy KE, Clegg MT.

Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2442-7. Epub 2005 Feb 7.

13.

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