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Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots.

Ferrari C, Shivhare D, Hansen BO, Pasha A, Esteban E, Provart NJ, Kragler F, Fernie AR, Tohge T, Mutwil M.

Plant Cell. 2020 Jan 27. pii: tpc.00780.2019. doi: 10.1105/tpc.19.00780. [Epub ahead of print]


Dissection of flag leaf metabolic shifts and their relationship with those occurring simultaneously in developing seed by application of non-targeted metabolomics.

Hu C, Rao J, Song Y, Chan SA, Tohge T, Cui B, Lin H, Fernie AR, Zhang D, Shi J.

PLoS One. 2020 Jan 24;15(1):e0227577. doi: 10.1371/journal.pone.0227577. eCollection 2020.


The Acetate Pathway Supports Flavonoid and Lipid Biosynthesis in Arabidopsis.

Perez de Souza L, Garbowicz K, Brotman Y, Tohge T, Fernie AR.

Plant Physiol. 2020 Feb;182(2):857-869. doi: 10.1104/pp.19.00683. Epub 2019 Nov 12.


Non-aqueous fractionation revealed changing subcellular metabolite distribution during apple fruit development.

Beshir WF, Tohge T, Watanabe M, Hertog MLATM, Hoefgen R, Fernie AR, Nicolaï BM.

Hortic Res. 2019 Aug 11;6:98. doi: 10.1038/s41438-019-0178-7. eCollection 2019.


Enhancement of vitamin B6 levels in rice expressing Arabidopsis vitamin B6 biosynthesis de novo genes.

Mangel N, Fudge JB, Li KT, Wu TY, Tohge T, Fernie AR, Szurek B, Fitzpatrick TB, Gruissem W, Vanderschuren H.

Plant J. 2019 Sep;99(6):1047-1065. doi: 10.1111/tpj.14379. Epub 2019 Jul 11.


Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida.

Ferrari C, Proost S, Janowski M, Becker J, Nikoloski Z, Bhattacharya D, Price D, Tohge T, Bar-Even A, Fernie A, Stitt M, Mutwil M.

Nat Commun. 2019 Feb 13;10(1):737. doi: 10.1038/s41467-019-08703-2.


A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning.

Battat M, Eitan A, Rogachev I, Hanhineva K, Fernie A, Tohge T, Beekwilder J, Aharoni A.

Plant Physiol. 2019 May;180(1):87-108. doi: 10.1104/pp.19.00009. Epub 2019 Feb 12.


Plasmodium Para-Aminobenzoate Synthesis and Salvage Resolve Avoidance of Folate Competition and Adaptation to Host Diet.

Matz JM, Watanabe M, Falade M, Tohge T, Hoefgen R, Matuschewski K.

Cell Rep. 2019 Jan 8;26(2):356-363.e4. doi: 10.1016/j.celrep.2018.12.062.


Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome.

Perez de Souza L, Scossa F, Proost S, Bitocchi E, Papa R, Tohge T, Fernie AR.

Plant J. 2019 Mar;97(6):1132-1153. doi: 10.1111/tpj.14178. Epub 2019 Jan 15.


Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth.

Fàbregas N, Lozano-Elena F, Blasco-Escámez D, Tohge T, Martínez-Andújar C, Albacete A, Osorio S, Bustamante M, Riechmann JL, Nomura T, Yokota T, Conesa A, Alfocea FP, Fernie AR, Caño-Delgado AI.

Nat Commun. 2018 Nov 8;9(1):4680. doi: 10.1038/s41467-018-06861-3.


The Mitochondrial Thioredoxin System Contributes to the Metabolic Responses Under Drought Episodes in Arabidopsis.

da Fonseca-Pereira P, Daloso DM, Gago J, de Oliveira Silva FM, Condori-Apfata JA, Florez-Sarasa I, Tohge T, Reichheld JP, Nunes-Nesi A, Fernie AR, Araújo WL.

Plant Cell Physiol. 2019 Jan 1;60(1):213-229. doi: 10.1093/pcp/pcy194.


The Role of Persulfide Metabolism During Arabidopsis Seed Development Under Light and Dark Conditions.

Lorenz C, Brandt S, Borisjuk L, Rolletschek H, Heinzel N, Tohge T, Fernie AR, Braun HP, Hildebrandt TM.

Front Plant Sci. 2018 Sep 19;9:1381. doi: 10.3389/fpls.2018.01381. eCollection 2018.


Insect egg deposition renders plant defence against hatching larvae more effective in a salicylic acid-dependent manner.

Lortzing V, Oberländer J, Lortzing T, Tohge T, Steppuhn A, Kunze R, Hilker M.

Plant Cell Environ. 2019 Mar;42(3):1019-1032. doi: 10.1111/pce.13447. Epub 2018 Nov 19.


Metabolome and Lipidome Profiles of Populus × canescens Twig Tissues During Annual Growth Show Phospholipid-Linked Storage and Mobilization of C, N, and S.

Watanabe M, Netzer F, Tohge T, Orf I, Brotman Y, Dubbert D, Fernie AR, Rennenberg H, Hoefgen R, Herschbach C.

Front Plant Sci. 2018 Sep 5;9:1292. doi: 10.3389/fpls.2018.01292. eCollection 2018.


Corrigendum: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants.

Tohge T, de Souza LP, Fernie AR.

J Exp Bot. 2018 Aug 14;69(18):4497. doi: 10.1093/jxb/ery260. No abstract available.


Extended darkness induces internal turnover of glucosinolates in Arabidopsis thaliana leaves.

Brandt S, Fachinger S, Tohge T, Fernie AR, Braun HP, Hildebrandt TM.

PLoS One. 2018 Aug 9;13(8):e0202153. doi: 10.1371/journal.pone.0202153. eCollection 2018.


The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism.

Watanabe M, Tohge T, Fernie AR, Hoefgen R.

Front Plant Sci. 2018 May 28;9:702. doi: 10.3389/fpls.2018.00702. eCollection 2018.


Targeted LC-MS Analysis for Plant Secondary Metabolites.

Shimizu T, Watanabe M, Fernie AR, Tohge T.

Methods Mol Biol. 2018;1778:171-181. doi: 10.1007/978-1-4939-7819-9_12.


Carbon Atomic Survey for Identification of Selected Metabolic Fluxes.

Perez de Souza L, Fernie AR, Tohge T.

Methods Mol Biol. 2018;1778:59-67. doi: 10.1007/978-1-4939-7819-9_5.


On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress.

Tohge T, Perez de Souza L, Fernie AR.

Phytochem Rev. 2018;17(2):279-290. doi: 10.1007/s11101-017-9531-3. Epub 2017 Sep 8. Review.


Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.

Kamranfar I, Xue GP, Tohge T, Sedaghatmehr M, Fernie AR, Balazadeh S, Mueller-Roeber B.

New Phytol. 2018 Jun;218(4):1543-1557. doi: 10.1111/nph.15127. Epub 2018 Apr 16.


The natural variance of the Arabidopsis floral secondary metabolites.

Tohge T, Borghi M, Fernie AR.

Sci Data. 2018 Apr 3;5:180051. doi: 10.1038/sdata.2018.51.


Comprehensive Metabolomics Studies of Plant Developmental Senescence.

Watanabe M, Tohge T, Balazadeh S, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Methods Mol Biol. 2018;1744:339-358. doi: 10.1007/978-1-4939-7672-0_28.


Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.

Peng M, Shahzad R, Gul A, Subthain H, Shen S, Lei L, Zheng Z, Zhou J, Lu D, Wang S, Nishawy E, Liu X, Tohge T, Fernie AR, Luo J.

Nat Commun. 2017 Dec 7;8(1):1975. doi: 10.1038/s41467-017-02168-x.


Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard.

Gago J, Fernie AR, Nikoloski Z, Tohge T, Martorell S, Escalona JM, Ribas-Carbó M, Flexas J, Medrano H.

Plant Methods. 2017 Oct 30;13:90. doi: 10.1186/s13007-017-0241-z. eCollection 2017.


Canalization of Tomato Fruit Metabolism.

Alseekh S, Tong H, Scossa F, Brotman Y, Vigroux F, Tohge T, Ofner I, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2017 Nov;29(11):2753-2765. doi: 10.1105/tpc.17.00367. Epub 2017 Nov 1.


Current understanding of the pathways of flavonoid biosynthesis in model and crop plants.

Tohge T, de Souza LP, Fernie AR.

J Exp Bot. 2017 Jul 10;68(15):4013-4028. doi: 10.1093/jxb/erx177. Review. Erratum in: J Exp Bot. 2018 Aug 14;69(18):4497.


The Genetics of Plant Metabolism.

Fernie AR, Tohge T.

Annu Rev Genet. 2017 Nov 27;51:287-310. doi: 10.1146/annurev-genet-120116-024640. Epub 2017 Sep 6. Review.


Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions.

Wu S, Tohge T, Cuadros-Inostroza Á, Tong H, Tenenboim H, Kooke R, Méret M, Keurentjes JB, Nikoloski Z, Fernie AR, Willmitzer L, Brotman Y.

Mol Plant. 2018 Jan 8;11(1):118-134. doi: 10.1016/j.molp.2017.08.012. Epub 2017 Sep 1.


Phytochrome A and B Regulate Primary Metabolism in Arabidopsis Leaves in Response to Light.

Han X, Tohge T, Lalor P, Dockery P, Devaney N, Esteves-Ferreira AA, Fernie AR, Sulpice R.

Front Plant Sci. 2017 Aug 9;8:1394. doi: 10.3389/fpls.2017.01394. eCollection 2017.


13CO2 Labeling and Mass Spectral Analysis of Photorespiration.

de Souza LP, Szecówka M, Fernie AR, Tohge T.

Methods Mol Biol. 2017;1653:157-166. doi: 10.1007/978-1-4939-7225-8_11.


The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.

Zhu X, Yu J, Shi J, Tohge T, Fernie AR, Meir S, Aharoni A, Xu D, Zhang D, Liang W.

J Integr Plant Biol. 2017 Sep;59(9):612-628. doi: 10.1111/jipb.12574.


The SAL-PAP Chloroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling.

Ishiga Y, Watanabe M, Ishiga T, Tohge T, Matsuura T, Ikeda Y, Hoefgen R, Fernie AR, Mysore KS.

Mol Plant Microbe Interact. 2017 Oct;30(10):829-841. doi: 10.1094/MPMI-03-17-0055-R. Epub 2017 Aug 22.


Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.).

Moschen S, Di Rienzo JA, Higgins J, Tohge T, Watanabe M, González S, Rivarola M, García-García F, Dopazo J, Hopp HE, Hoefgen R, Fernie AR, Paniego N, Fernández P, Heinz RA.

Plant Mol Biol. 2017 Jul;94(4-5):549-564. doi: 10.1007/s11103-017-0625-5. Epub 2017 Jun 21.


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics.

Perez de Souza L, Naake T, Tohge T, Fernie AR.

Gigascience. 2017 Jul 1;6(7):1-20. doi: 10.1093/gigascience/gix037. Review.


Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens.

Tohge T, Fernie AR.

Trends Plant Sci. 2017 Apr;22(4):308-315. doi: 10.1016/j.tplants.2017.01.003. Epub 2017 Feb 4. Review.


Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis.

Jin M, Zhang X, Zhao M, Deng M, Du Y, Zhou Y, Wang S, Tohge T, Fernie AR, Willmitzer L, Brotman Y, Yan J, Wen W.

BMC Plant Biol. 2017 Jan 18;17(1):17. doi: 10.1186/s12870-017-0972-z.


Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients.

Popławski P, Tohge T, Bogusławska J, Rybicka B, Tański Z, Treviño V, Fernie AR, Piekiełko-Witkowska A.

Biochim Biophys Acta Mol Basis Dis. 2017 Mar;1863(3):744-752. doi: 10.1016/j.bbadis.2016.12.011. Epub 2016 Dec 22.


Specialized Metabolites of the Flavonol Class Mediate Root Phototropism and Growth.

Tohge T, Fernie AR.

Mol Plant. 2016 Dec 5;9(12):1554-1555. doi: 10.1016/j.molp.2016.10.019. Epub 2016 Nov 11. No abstract available.


Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants.

Aarabi F, Kusajima M, Tohge T, Konishi T, Gigolashvili T, Takamune M, Sasazaki Y, Watanabe M, Nakashita H, Fernie AR, Saito K, Takahashi H, Hubberten HM, Hoefgen R, Maruyama-Nakashita A.

Sci Adv. 2016 Oct 7;2(10):e1601087. eCollection 2016 Oct.


Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism.

Liu Z, Tavares R, Forsythe ES, André F, Lugan R, Jonasson G, Boutet-Mercey S, Tohge T, Beilstein MA, Werck-Reichhart D, Renault H.

Nat Commun. 2016 Oct 7;7:13026. doi: 10.1038/ncomms13026.


Photorespiration Is Crucial for Dynamic Response of Photosynthetic Metabolism and Stomatal Movement to Altered CO2 Availability.

Eisenhut M, Bräutigam A, Timm S, Florian A, Tohge T, Fernie AR, Bauwe H, Weber APM.

Mol Plant. 2017 Jan 9;10(1):47-61. doi: 10.1016/j.molp.2016.09.011. Epub 2016 Oct 1.


Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana.

Schulz E, Tohge T, Zuther E, Fernie AR, Hincha DK.

Sci Rep. 2016 Sep 23;6:34027. doi: 10.1038/srep34027.


Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae.

Tohge T, Wendenburg R, Ishihara H, Nakabayashi R, Watanabe M, Sulpice R, Hoefgen R, Takayama H, Saito K, Stitt M, Fernie AR.

Nat Commun. 2016 Aug 22;7:12399. doi: 10.1038/ncomms12399.


Glutaredoxin GRXS17 Associates with the Cytosolic Iron-Sulfur Cluster Assembly Pathway.

Iñigo S, Durand AN, Ritter A, Le Gall S, Termathe M, Klassen R, Tohge T, De Coninck B, Van Leene J, De Clercq R, Cammue BP, Fernie AR, Gevaert K, De Jaeger G, Leidel SA, Schaffrath R, Van Lijsebettens M, Pauwels L, Goossens A.

Plant Physiol. 2016 Oct;172(2):858-873. Epub 2016 Aug 8.


Vacuolar Chloride Fluxes Impact Ion Content and Distribution during Early Salinity Stress.

Baetz U, Eisenach C, Tohge T, Martinoia E, De Angeli A.

Plant Physiol. 2016 Oct;172(2):1167-1181. Epub 2016 Aug 8.


An Overview of Compounds Derived from the Shikimate and Phenylpropanoid Pathways and Their Medicinal Importance.

Tohge T, Fernie AR.

Mini Rev Med Chem. 2017;17(12):1013-1027. doi: 10.2174/1389557516666160624123425. Review.


Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.).

Lu Y, Yasuda S, Li X, Fukao Y, Tohge T, Fernie AR, Matsukura C, Ezura H, Sato T, Yamaguchi J.

J Proteomics. 2016 Jun 30;143:254-264. doi: 10.1016/j.jprot.2016.04.016. Epub 2016 Apr 22.


Dealing with the sulfur part of cysteine: four enzymatic steps degrade l-cysteine to pyruvate and thiosulfate in Arabidopsis mitochondria.

Höfler S, Lorenz C, Busch T, Brinkkötter M, Tohge T, Fernie AR, Braun HP, Hildebrandt TM.

Physiol Plant. 2016 Jul;157(3):352-66. doi: 10.1111/ppl.12454. Epub 2016 Jun 3.


Alterations in primary and secondary metabolism in Vitis vinifera 'Malvasía de Banyalbufar' upon infection with Grapevine leafroll-associated virus 3.

Montero R, Pérez-Bueno ML, Barón M, Florez-Sarasa I, Tohge T, Fernie AR, Ouad Hel A, Flexas J, Bota J.

Physiol Plant. 2016 Aug;157(4):442-52. doi: 10.1111/ppl.12440. Epub 2016 Apr 14.


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