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Items: 1 to 50 of 143

1.

The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism.

Watanabe M, Tohge T, Fernie AR, Hoefgen R.

Front Plant Sci. 2018 May 28;9:702. doi: 10.3389/fpls.2018.00702. eCollection 2018.

2.

Targeted LC-MS Analysis for Plant Secondary Metabolites.

Shimizu T, Watanabe M, Fernie AR, Tohge T.

Methods Mol Biol. 2018;1778:171-181. doi: 10.1007/978-1-4939-7819-9_12.

PMID:
29761438
3.

Carbon Atomic Survey for Identification of Selected Metabolic Fluxes.

Perez de Souza L, Fernie AR, Tohge T.

Methods Mol Biol. 2018;1778:59-67. doi: 10.1007/978-1-4939-7819-9_5.

PMID:
29761431
4.

On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress.

Tohge T, Perez de Souza L, Fernie AR.

Phytochem Rev. 2018;17(2):279-290. doi: 10.1007/s11101-017-9531-3. Epub 2017 Sep 8. Review.

5.

Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.

Kamranfar I, Xue GP, Tohge T, Sedaghatmehr M, Fernie AR, Balazadeh S, Mueller-Roeber B.

New Phytol. 2018 Jun;218(4):1543-1557. doi: 10.1111/nph.15127. Epub 2018 Apr 16.

PMID:
29659022
6.

The natural variance of the Arabidopsis floral secondary metabolites.

Tohge T, Borghi M, Fernie AR.

Sci Data. 2018 Apr 3;5:180051. doi: 10.1038/sdata.2018.51.

7.

Comprehensive Metabolomics Studies of Plant Developmental Senescence.

Watanabe M, Tohge T, Balazadeh S, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Methods Mol Biol. 2018;1744:339-358. doi: 10.1007/978-1-4939-7672-0_28.

PMID:
29392679
8.

Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.

Peng M, Shahzad R, Gul A, Subthain H, Shen S, Lei L, Zheng Z, Zhou J, Lu D, Wang S, Nishawy E, Liu X, Tohge T, Fernie AR, Luo J.

Nat Commun. 2017 Dec 7;8(1):1975. doi: 10.1038/s41467-017-02168-x.

9.

Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard.

Gago J, Fernie AR, Nikoloski Z, Tohge T, Martorell S, Escalona JM, Ribas-Carbó M, Flexas J, Medrano H.

Plant Methods. 2017 Oct 30;13:90. doi: 10.1186/s13007-017-0241-z. eCollection 2017.

10.

Canalization of Tomato Fruit Metabolism.

Alseekh S, Tong H, Scossa F, Brotman Y, Vigroux F, Tohge T, Ofner I, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2017 Nov;29(11):2753-2765. doi: 10.1105/tpc.17.00367. Epub 2017 Nov 1.

11.

Current understanding of the pathways of flavonoid biosynthesis in model and crop plants.

Tohge T, de Souza LP, Fernie AR.

J Exp Bot. 2017 Jul 10;68(15):4013-4028. doi: 10.1093/jxb/erx177.

PMID:
28922752
12.

The Genetics of Plant Metabolism.

Fernie AR, Tohge T.

Annu Rev Genet. 2017 Nov 27;51:287-310. doi: 10.1146/annurev-genet-120116-024640. Epub 2017 Sep 6.

PMID:
28876980
13.

Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions.

Wu S, Tohge T, Cuadros-Inostroza Á, Tong H, Tenenboim H, Kooke R, Méret M, Keurentjes JB, Nikoloski Z, Fernie AR, Willmitzer L, Brotman Y.

Mol Plant. 2018 Jan 8;11(1):118-134. doi: 10.1016/j.molp.2017.08.012. Epub 2017 Sep 1.

PMID:
28866081
14.

Phytochrome A and B Regulate Primary Metabolism in Arabidopsis Leaves in Response to Light.

Han X, Tohge T, Lalor P, Dockery P, Devaney N, Esteves-Ferreira AA, Fernie AR, Sulpice R.

Front Plant Sci. 2017 Aug 9;8:1394. doi: 10.3389/fpls.2017.01394. eCollection 2017.

15.

13CO2 Labeling and Mass Spectral Analysis of Photorespiration.

de Souza LP, Szecówka M, Fernie AR, Tohge T.

Methods Mol Biol. 2017;1653:157-166. doi: 10.1007/978-1-4939-7225-8_11.

PMID:
28822132
16.

The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.

Zhu X, Yu J, Shi J, Tohge T, Fernie AR, Meir S, Aharoni A, Xu D, Zhang D, Liang W.

J Integr Plant Biol. 2017 Sep;59(9):612-628. doi: 10.1111/jipb.12574.

PMID:
28783252
17.

The SAL-PAP Chloroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling.

Ishiga Y, Watanabe M, Ishiga T, Tohge T, Matsuura T, Ikeda Y, Hoefgen R, Fernie AR, Mysore KS.

Mol Plant Microbe Interact. 2017 Oct;30(10):829-841. doi: 10.1094/MPMI-03-17-0055-R. Epub 2017 Aug 22.

PMID:
28703028
18.

Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.).

Moschen S, Di Rienzo JA, Higgins J, Tohge T, Watanabe M, González S, Rivarola M, García-García F, Dopazo J, Hopp HE, Hoefgen R, Fernie AR, Paniego N, Fernández P, Heinz RA.

Plant Mol Biol. 2017 Jul;94(4-5):549-564. doi: 10.1007/s11103-017-0625-5. Epub 2017 Jun 21.

PMID:
28639116
19.

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics.

Perez de Souza L, Naake T, Tohge T, Fernie AR.

Gigascience. 2017 Jul 1;6(7):1-20. doi: 10.1093/gigascience/gix037. Review.

20.

Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens.

Tohge T, Fernie AR.

Trends Plant Sci. 2017 Apr;22(4):308-315. doi: 10.1016/j.tplants.2017.01.003. Epub 2017 Feb 4. Review.

PMID:
28173981
21.

Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis.

Jin M, Zhang X, Zhao M, Deng M, Du Y, Zhou Y, Wang S, Tohge T, Fernie AR, Willmitzer L, Brotman Y, Yan J, Wen W.

BMC Plant Biol. 2017 Jan 18;17(1):17. doi: 10.1186/s12870-017-0972-z.

22.

Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients.

Popławski P, Tohge T, Bogusławska J, Rybicka B, Tański Z, Treviño V, Fernie AR, Piekiełko-Witkowska A.

Biochim Biophys Acta. 2017 Mar;1863(3):744-752. doi: 10.1016/j.bbadis.2016.12.011. Epub 2016 Dec 22.

23.

Specialized Metabolites of the Flavonol Class Mediate Root Phototropism and Growth.

Tohge T, Fernie AR.

Mol Plant. 2016 Dec 5;9(12):1554-1555. doi: 10.1016/j.molp.2016.10.019. Epub 2016 Nov 11. No abstract available.

24.

Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants.

Aarabi F, Kusajima M, Tohge T, Konishi T, Gigolashvili T, Takamune M, Sasazaki Y, Watanabe M, Nakashita H, Fernie AR, Saito K, Takahashi H, Hubberten HM, Hoefgen R, Maruyama-Nakashita A.

Sci Adv. 2016 Oct 7;2(10):e1601087. eCollection 2016 Oct.

25.

Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism.

Liu Z, Tavares R, Forsythe ES, André F, Lugan R, Jonasson G, Boutet-Mercey S, Tohge T, Beilstein MA, Werck-Reichhart D, Renault H.

Nat Commun. 2016 Oct 7;7:13026. doi: 10.1038/ncomms13026.

26.

Photorespiration Is Crucial for Dynamic Response of Photosynthetic Metabolism and Stomatal Movement to Altered CO2 Availability.

Eisenhut M, Bräutigam A, Timm S, Florian A, Tohge T, Fernie AR, Bauwe H, Weber APM.

Mol Plant. 2017 Jan 9;10(1):47-61. doi: 10.1016/j.molp.2016.09.011. Epub 2016 Oct 1.

27.

Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana.

Schulz E, Tohge T, Zuther E, Fernie AR, Hincha DK.

Sci Rep. 2016 Sep 23;6:34027. doi: 10.1038/srep34027.

28.

Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae.

Tohge T, Wendenburg R, Ishihara H, Nakabayashi R, Watanabe M, Sulpice R, Hoefgen R, Takayama H, Saito K, Stitt M, Fernie AR.

Nat Commun. 2016 Aug 22;7:12399. doi: 10.1038/ncomms12399.

29.

Glutaredoxin GRXS17 Associates with the Cytosolic Iron-Sulfur Cluster Assembly Pathway.

Iñigo S, Durand AN, Ritter A, Le Gall S, Termathe M, Klassen R, Tohge T, De Coninck B, Van Leene J, De Clercq R, Cammue BP, Fernie AR, Gevaert K, De Jaeger G, Leidel SA, Schaffrath R, Van Lijsebettens M, Pauwels L, Goossens A.

Plant Physiol. 2016 Oct;172(2):858-873. Epub 2016 Aug 8.

30.

Vacuolar Chloride Fluxes Impact Ion Content and Distribution during Early Salinity Stress.

Baetz U, Eisenach C, Tohge T, Martinoia E, De Angeli A.

Plant Physiol. 2016 Oct;172(2):1167-1181. Epub 2016 Aug 8.

31.

An Overview of Compounds Derived from the Shikimate and Phenylpropanoid Pathways and Their Medicinal Importance.

Tohge T, Fernie AR.

Mini Rev Med Chem. 2017;17(12):1013-1027. doi: 10.2174/1389557516666160624123425. Review.

PMID:
27342231
32.

Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.).

Lu Y, Yasuda S, Li X, Fukao Y, Tohge T, Fernie AR, Matsukura C, Ezura H, Sato T, Yamaguchi J.

J Proteomics. 2016 Jun 30;143:254-264. doi: 10.1016/j.jprot.2016.04.016. Epub 2016 Apr 22.

PMID:
27113132
33.

Dealing with the sulfur part of cysteine: four enzymatic steps degrade l-cysteine to pyruvate and thiosulfate in Arabidopsis mitochondria.

Höfler S, Lorenz C, Busch T, Brinkkötter M, Tohge T, Fernie AR, Braun HP, Hildebrandt TM.

Physiol Plant. 2016 Jul;157(3):352-66. doi: 10.1111/ppl.12454. Epub 2016 Jun 3.

PMID:
27105581
34.

Alterations in primary and secondary metabolism in Vitis vinifera 'Malvasía de Banyalbufar' upon infection with Grapevine leafroll-associated virus 3.

Montero R, Pérez-Bueno ML, Barón M, Florez-Sarasa I, Tohge T, Fernie AR, Ouad Hel A, Flexas J, Bota J.

Physiol Plant. 2016 Aug;157(4):442-52. doi: 10.1111/ppl.12440. Epub 2016 Apr 14.

PMID:
26926417
35.

The Role of SWI/SNF Chromatin Remodeling Complexes in Hormone Crosstalk.

Sarnowska E, Gratkowska DM, Sacharowski SP, Cwiek P, Tohge T, Fernie AR, Siedlecki JA, Koncz C, Sarnowski TJ.

Trends Plant Sci. 2016 Jul;21(7):594-608. doi: 10.1016/j.tplants.2016.01.017. Epub 2016 Feb 23. Review.

PMID:
26920655
36.

Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development.

Hu C, Tohge T, Chan SA, Song Y, Rao J, Cui B, Lin H, Wang L, Fernie AR, Zhang D, Shi J.

Sci Rep. 2016 Feb 10;6:20942. doi: 10.1038/srep20942.

37.

Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis.

Colinas M, Eisenhut M, Tohge T, Pesquera M, Fernie AR, Weber AP, Fitzpatrick TB.

Plant Cell. 2016 Feb;28(2):439-53. doi: 10.1105/tpc.15.01033. Epub 2016 Feb 8.

38.

FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants.

Ruprecht C, Mendrinna A, Tohge T, Sampathkumar A, Klie S, Fernie AR, Nikoloski Z, Persson S, Mutwil M.

Plant Physiol. 2016 Mar;170(3):1878-94. doi: 10.1104/pp.15.01281. Epub 2016 Jan 11.

39.

Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6.

Ishihara H, Tohge T, Viehöver P, Fernie AR, Weisshaar B, Stracke R.

J Exp Bot. 2016 Mar;67(5):1505-17. doi: 10.1093/jxb/erv546. Epub 2015 Dec 29.

40.

Genomics-based strategies for the use of natural variation in the improvement of crop metabolism.

Scossa F, Brotman Y, de Abreu E Lima F, Willmitzer L, Nikoloski Z, Tohge T, Fernie AR.

Plant Sci. 2016 Jan;242:47-64. doi: 10.1016/j.plantsci.2015.05.021. Epub 2015 Jun 5. Review.

PMID:
26566824
41.

Combining Quantitative Genetics Approaches with Regulatory Network Analysis to Dissect the Complex Metabolism of the Maize Kernel.

Wen W, Liu H, Zhou Y, Jin M, Yang N, Li D, Luo J, Xiao Y, Pan Q, Tohge T, Fernie AR, Yan J.

Plant Physiol. 2016 Jan;170(1):136-46. doi: 10.1104/pp.15.01444. Epub 2015 Nov 10.

42.

Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato.

Zhang Y, Butelli E, Alseekh S, Tohge T, Rallapalli G, Luo J, Kawar PG, Hill L, Santino A, Fernie AR, Martin C.

Nat Commun. 2015 Oct 26;6:8635. doi: 10.1038/ncomms9635.

43.

Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis.

Pham PA, Wahl V, Tohge T, de Souza LR, Zhang Y, Do PT, Olas JJ, Stitt M, Araújo WL, Fernie AR.

Plant Mol Biol. 2015 Nov;89(4-5):319-38. doi: 10.1007/s11103-015-0363-5. Epub 2015 Oct 1.

44.

The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.

Lotkowska ME, Tohge T, Fernie AR, Xue GP, Balazadeh S, Mueller-Roeber B.

Plant Physiol. 2015 Nov;169(3):1862-80. doi: 10.1104/pp.15.00605. Epub 2015 Sep 16.

45.

Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation.

Tohge T, Scossa F, Fernie AR.

Plant Physiol. 2015 Nov;169(3):1499-511. doi: 10.1104/pp.15.01006. Epub 2015 Sep 14.

46.

Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.

Wang T, Tohge T, Ivakov A, Mueller-Roeber B, Fernie AR, Mutwil M, Schippers JH, Persson S.

Plant Physiol. 2015 Oct;169(2):1027-41. doi: 10.1104/pp.15.00962. Epub 2015 Aug 4.

47.

Metabolomics-Inspired Insight into Developmental, Environmental and Genetic Aspects of Tomato Fruit Chemical Composition and Quality.

Tohge T, Fernie AR.

Plant Cell Physiol. 2015 Sep;56(9):1681-96. doi: 10.1093/pcp/pcv093. Epub 2015 Jul 29. Review.

PMID:
26228272
48.

Profiling of primary metabolites and flavonols in leaves of two table grape varieties collected from semiarid and temperate regions.

Harb J, Alseekh S, Tohge T, Fernie AR.

Phytochemistry. 2015 Sep;117:444-55. doi: 10.1016/j.phytochem.2015.07.013. Epub 2015 Jul 17.

PMID:
26196939
49.

Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower.

Moschen S, Bengoa Luoni S, Di Rienzo JA, Caro Mdel P, Tohge T, Watanabe M, Hollmann J, González S, Rivarola M, García-García F, Dopazo J, Hopp HE, Hoefgen R, Fernie AR, Paniego N, Fernández P, Heinz RA.

Plant Biotechnol J. 2016 Feb;14(2):719-34. doi: 10.1111/pbi.12422. Epub 2015 Jul 1.

50.

Ectopic expression of snapdragon transcription factors facilitates the identification of genes encoding enzymes of anthocyanin decoration in tomato.

Tohge T, Zhang Y, Peterek S, Matros A, Rallapalli G, Tandrón YA, Butelli E, Kallam K, Hertkorn N, Mock HP, Martin C, Fernie AR.

Plant J. 2015 Aug;83(4):686-704. doi: 10.1111/tpj.12920.

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