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Items: 50

1.

Will biologists become computer scientists? A truly interdisciplinary effort by computer scientists and biologists to understand how cells process information may yield new insights for both fields.

Condon A, Kirchner H, Larivière D, Marshall W, Noireaux V, Tlusty T, Fourmentin E.

EMBO Rep. 2018 Jul 30. pii: e46628. doi: 10.15252/embr.201846628. [Epub ahead of print] No abstract available.

PMID:
30061101
2.

Green function of correlated genes in a minimal mechanical model of protein evolution.

Dutta S, Eckmann JP, Libchaber A, Tlusty T.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):E4559-E4568. doi: 10.1073/pnas.1716215115. Epub 2018 Apr 30.

3.

Widom Delta of Supercritical Gas-Liquid Coexistence.

Ha MY, Yoon TJ, Tlusty T, Jho Y, Lee WB.

J Phys Chem Lett. 2018 Apr 5;9(7):1734-1738. doi: 10.1021/acs.jpclett.8b00430. Epub 2018 Mar 22.

PMID:
29553732
4.

Lossless Brownian Information Engine.

Paneru G, Lee DY, Tlusty T, Pak HK.

Phys Rev Lett. 2018 Jan 12;120(2):020601. doi: 10.1103/PhysRevLett.120.020601.

PMID:
29376721
5.

Enzyme leaps fuel antichemotaxis.

Jee AY, Dutta S, Cho YK, Tlusty T, Granick S.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):14-18. doi: 10.1073/pnas.1717844115. Epub 2017 Dec 18.

6.

Two-dimensional flow of driven particles: a microfluidic pathway to the non-equilibrium frontier.

Beatus T, Shani I, Bar-Ziv RH, Tlusty T.

Chem Soc Rev. 2017 Sep 18;46(18):5620-5646. doi: 10.1039/c7cs00374a. Review.

PMID:
28869272
7.

Strain analysis of protein structures and low dimensionality of mechanical allosteric couplings.

Mitchell MR, Tlusty T, Leibler S.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):E5847-E5855. Epub 2016 Sep 21.

8.

Comment on "Ribosome utilizes the minimum free energy changes to achieve the highest decoding rate and fidelity".

Savir Y, Tlusty T.

Phys Rev E. 2016 May;93(5):056401. doi: 10.1103/PhysRevE.93.056401. Epub 2016 May 13.

PMID:
27301009
9.

Self-referring DNA and protein: a remark on physical and geometrical aspects.

Tlusty T.

Philos Trans A Math Phys Eng Sci. 2016 Mar 13;374(2063). pii: 20150070. doi: 10.1098/rsta.2015.0070.

10.

Where Two Are Fighting, the Third Wins: Stronger Selection Facilitates Greater Polymorphism in Traits Conferring Competition-Dispersal Tradeoffs.

Lampert A, Tlusty T.

PLoS One. 2016 Feb 4;11(2):e0147970. doi: 10.1371/journal.pone.0147970. eCollection 2016.

11.

Factors associated with successful magnetic resonance-guided focused ultrasound treatment: efficiency of acoustic energy delivery through the skull.

Chang WS, Jung HH, Zadicario E, Rachmilevitch I, Tlusty T, Vitek S, Chang JW.

J Neurosurg. 2016 Feb;124(2):411-6. doi: 10.3171/2015.3.JNS142592. Epub 2015 Sep 11.

PMID:
26361280
12.

Evolution of bow-tie architectures in biology.

Friedlander T, Mayo AE, Tlusty T, Alon U.

PLoS Comput Biol. 2015 Mar 23;11(3):e1004055. doi: 10.1371/journal.pcbi.1004055. eCollection 2015 Mar.

14.

Asymmetric effect of mechanical stress on the forward and reverse reaction catalyzed by an enzyme.

Joseph C, Tseng CY, Zocchi G, Tlusty T.

PLoS One. 2014 Jul 7;9(7):e101442. doi: 10.1371/journal.pone.0101442. eCollection 2014.

15.

Mutation rules and the evolution of sparseness and modularity in biological systems.

Friedlander T, Mayo AE, Tlusty T, Alon U.

PLoS One. 2013 Aug 6;8(8):e70444. doi: 10.1371/journal.pone.0070444. Print 2013. Erratum in: PLoS One. 2015;10(3):e0118129.

16.

The ribosome as an optimal decoder: a lesson in molecular recognition.

Savir Y, Tlusty T.

Cell. 2013 Apr 11;153(2):471-9. doi: 10.1016/j.cell.2013.03.032.

17.

Resonance-induced multimodal body-size distributions in ecosystems.

Lampert A, Tlusty T.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):205-9. doi: 10.1073/pnas.1211761110. Epub 2012 Dec 17.

18.

Effects of long DNA folding and small RNA stem-loop in thermophoresis.

Maeda YT, Tlusty T, Libchaber A.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17972-7. doi: 10.1073/pnas.1215764109. Epub 2012 Oct 15.

19.

Modeling and experimental methods to probe the link between global transcription and spatial organization of chromosomes.

Iyer KV, Maharana S, Gupta S, Libchaber A, Tlusty T, Shivashankar GV.

PLoS One. 2012;7(10):e46628. doi: 10.1371/journal.pone.0046628. Epub 2012 Oct 1.

20.

Balancing speed and accuracy of polyclonal T cell activation: a role for extracellular feedback.

Savir Y, Waysbort N, Antebi YE, Tlusty T, Friedman N.

BMC Syst Biol. 2012 Aug 27;6:111. doi: 10.1186/1752-0509-6-111.

21.

Density-dependent cooperation as a mechanism for persistence and coexistence.

Lampert A, Tlusty T.

Evolution. 2011 Oct;65(10):2750-9. doi: 10.1111/j.1558-5646.2011.01364.x. Epub 2011 Jun 27.

PMID:
21967418
22.

RecA-mediated homology search as a nearly optimal signal detection system.

Savir Y, Tlusty T.

Mol Cell. 2010 Nov 12;40(3):388-96. doi: 10.1016/j.molcel.2010.10.020.

23.

Leaders of neuronal cultures in a quorum percolation model.

Eckmann JP, Moses E, Stetter O, Tlusty T, Zbinden C.

Front Comput Neurosci. 2010 Sep 22;4. pii: 132. doi: 10.3389/fncom.2010.00132. eCollection 2010.

24.

Effective induction of protective systemic immunity with nasally administered vaccines adjuvanted with IL-1.

Gwinn WM, Kirwan SM, Wang SH, Ashcraft KA, Sparks NL, Doil CR, Tlusty TG, Casey LS, Hollingshead SK, Briles DE, Dondero RS, Hickey AJ, Foster WM, Staats HF.

Vaccine. 2010 Oct 4;28(42):6901-14. doi: 10.1016/j.vaccine.2010.08.006. Epub 2010 Aug 17. Erratum in: Vaccine. 2011 Mar 24;29(15):2821.

25.

A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes.

Tlusty T.

Phys Life Rev. 2010 Sep;7(3):362-76. doi: 10.1016/j.plrev.2010.06.002. Epub 2010 Jun 4. Review.

PMID:
20558115
26.

Messenger RNA fluctuations and regulatory RNAs shape the dynamics of a negative feedback loop.

Rodríguez Martínez M, Soriano J, Tlusty T, Pilpel Y, Furman I.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031924. Epub 2010 Mar 30.

PMID:
20365787
27.

Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape.

Savir Y, Noor E, Milo R, Tlusty T.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3475-80. doi: 10.1073/pnas.0911663107. Epub 2010 Feb 8.

28.

Burgers shock waves and sound in a 2D microfluidic droplets ensemble.

Beatus T, Tlusty T, Bar-Ziv R.

Phys Rev Lett. 2009 Sep 11;103(11):114502. Epub 2009 Sep 11.

PMID:
19792377
29.

Mutability as an altruistic trait in finite asexual populations.

Lampert A, Tlusty T.

J Theor Biol. 2009 Dec 7;261(3):414-22. doi: 10.1016/j.jtbi.2009.08.027. Epub 2009 Aug 28.

PMID:
19716831
30.

Development of input connections in neural cultures.

Soriano J, Rodríguez Martínez M, Tlusty T, Moses E.

Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13758-63. doi: 10.1073/pnas.0707492105. Epub 2008 Sep 4.

31.

Casting polymer nets to optimize noisy molecular codes.

Tlusty T.

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8238-43. doi: 10.1073/pnas.0710274105. Epub 2008 Jun 11.

32.

A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number.

Tadmor AD, Tlusty T.

PLoS Comput Biol. 2008 May 2;4(4):e1000038. doi: 10.1371/journal.pcbi.1000038.

33.

A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost.

Tlusty T.

Phys Biol. 2008 Mar 4;5(1):016001. doi: 10.1088/1478-3975/5/1/016001.

PMID:
18367781
34.

Rate-distortion scenario for the emergence and evolution of noisy molecular codes.

Tlusty T.

Phys Rev Lett. 2008 Feb 1;100(4):048101. Epub 2008 Jan 29.

PMID:
18352335
35.

Anomalous microfluidic phonons induced by the interplay of hydrodynamic screening and incompressibility.

Beatus T, Bar-Ziv R, Tlusty T.

Phys Rev Lett. 2007 Sep 21;99(12):124502. Epub 2007 Sep 20.

PMID:
17930508
36.

A model for the emergence of the genetic code as a transition in a noisy information channel.

Tlusty T.

J Theor Biol. 2007 Nov 21;249(2):331-42. Epub 2007 Aug 10.

PMID:
17826800
38.

Percolation in living neural networks.

Breskin I, Soriano J, Moses E, Tlusty T.

Phys Rev Lett. 2006 Nov 3;97(18):188102. Epub 2006 Oct 30.

PMID:
17155581
39.

High fidelity of RecA-catalyzed recombination: a watchdog of genetic diversity.

Sagi D, Tlusty T, Stavans J.

Nucleic Acids Res. 2006;34(18):5021-31. Epub 2006 Sep 20.

40.

Coding limits on the number of transcription factors.

Itzkovitz S, Tlusty T, Alon U.

BMC Genomics. 2006 Sep 19;7:239.

41.

Rules for biological regulation based on error minimization.

Shinar G, Dekel E, Tlusty T, Alon U.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):3999-4004. Epub 2006 Mar 6.

42.

Molecular model of the contractile ring.

Biron D, Alvarez-Lacalle E, Tlusty T, Moses E.

Phys Rev Lett. 2005 Aug 26;95(9):098102. Epub 2005 Aug 25.

PMID:
16197254
43.

High-fidelity DNA sensing by protein binding fluctuations.

Tlusty T, Bar-Ziv R, Libchaber A.

Phys Rev Lett. 2004 Dec 17;93(25):258103. Epub 2004 Dec 14.

PMID:
15697950
44.

Protein-DNA computation by stochastic assembly cascade.

Bar-Ziv R, Tlusty T, Libchaber A.

Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11589-92. Epub 2002 Aug 19.

45.

Defect-induced phase separation in dipolar fluids.

Tlusty T, Safran SA.

Science. 2000 Nov 17;290(5495):1328-31.

46.

Topology, phase instabilities, and wetting of microemulsion networks

Tlusty T, Safran SA, Strey R.

Phys Rev Lett. 2000 Feb 7;84(6):1244-7.

PMID:
11017489
47.

Pearling in cells: a clue to understanding cell shape.

Bar-Ziv R, Tlusty T, Moses E, Safran SA, Bershadsky A.

Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10140-5.

48.

Localized dynamic light scattering: a new approach to dynamic measurements in optical microscopy.

Meller A, Bar-Ziv R, Tlusty T, Moses E, Stavans J, Safran SA.

Biophys J. 1998 Mar;74(3):1541-8.

49.

Neonatal cranial malformations.

Tlusty T.

Proc R Soc Med. 1970 May;63(5):459-60. No abstract available.

50.

Idiopathic myocarditis involving the bundle of His.

TLUSTY T.

Br Heart J. 1959 Jan;21(1):145-8. No abstract available.

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