Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 55

1.

Optimal Decoding of Cellular Identities in a Genetic Network.

Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T.

Cell. 2019 Feb 7;176(4):844-855.e15. doi: 10.1016/j.cell.2019.01.007. Epub 2019 Jan 31.

PMID:
30712870
2.

Evolutionary potential of transcription factors for gene regulatory rewiring.

Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC.

Nat Ecol Evol. 2018 Oct;2(10):1633-1643. doi: 10.1038/s41559-018-0651-y. Epub 2018 Sep 10.

PMID:
30201966
3.

Statistical mechanics for metabolic networks during steady state growth.

De Martino D, Mc Andersson A, Bergmiller T, Guet CC, Tkačik G.

Nat Commun. 2018 Jul 30;9(1):2988. doi: 10.1038/s41467-018-05417-9.

4.

Distributed and dynamic intracellular organization of extracellular information.

Granados AA, Pietsch JMJ, Cepeda-Humerez SA, Farquhar IL, Tkačik G, Swain PS.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6088-6093. doi: 10.1073/pnas.1716659115. Epub 2018 May 21.

5.

Nonlinear decoding of a complex movie from the mammalian retina.

Botella-Soler V, Deny S, Martius G, Marre O, Tkačik G.

PLoS Comput Biol. 2018 May 10;14(5):e1006057. doi: 10.1371/journal.pcbi.1006057. eCollection 2018 May.

6.

Probabilistic models of individual and collective animal behavior.

Bod'ová K, Mitchell GJ, Harpaz R, Schneidman E, Tkačik G.

PLoS One. 2018 Mar 7;13(3):e0193049. doi: 10.1371/journal.pone.0193049. eCollection 2018.

7.

Toward a unified theory of efficient, predictive, and sparse coding.

Chalk M, Marre O, Tkačik G.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):186-191. doi: 10.1073/pnas.1711114115. Epub 2017 Dec 19.

8.

Multiplexed computations in retinal ganglion cells of a single type.

Deny S, Ferrari U, Macé E, Yger P, Caplette R, Picaud S, Tkačik G, Marre O.

Nat Commun. 2017 Dec 6;8(1):1964. doi: 10.1038/s41467-017-02159-y.

9.

Shaping bacterial population behavior through computer-interfaced control of individual cells.

Chait R, Ruess J, Bergmiller T, Tkačik G, Guet CC.

Nat Commun. 2017 Nov 16;8(1):1535. doi: 10.1038/s41467-017-01683-1.

10.

Probabilistic models for neural populations that naturally capture global coupling and criticality.

Humplik J, Tkačik G.

PLoS Comput Biol. 2017 Sep 19;13(9):e1005763. doi: 10.1371/journal.pcbi.1005763. eCollection 2017 Sep.

11.

Discrete modes of social information processing predict individual behavior of fish in a group.

Harpaz R, Tkačik G, Schneidman E.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10149-10154. doi: 10.1073/pnas.1703817114. Epub 2017 Sep 5.

12.

Maximum entropy models as a tool for building precise neural controls.

Savin C, Tkačik G.

Curr Opin Neurobiol. 2017 Oct;46:120-126. doi: 10.1016/j.conb.2017.08.001. Epub 2017 Sep 3. Review.

PMID:
28869818
13.

Evolution of new regulatory functions on biophysically realistic fitness landscapes.

Friedlander T, Prizak R, Barton NH, Tkačik G.

Nat Commun. 2017 Aug 9;8(1):216. doi: 10.1038/s41467-017-00238-8.

14.

Decoding of position in the developing neural tube from antiparallel morphogen gradients.

Zagorski M, Tabata Y, Brandenberg N, Lutolf MP, Tkačik G, Bollenbach T, Briscoe J, Kicheva A.

Science. 2017 Jun 30;356(6345):1379-1383. doi: 10.1126/science.aam5887.

15.

Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity.

Bergmiller T, Andersson AMC, Tomasek K, Balleza E, Kiviet DJ, Hauschild R, Tkačik G, Guet CC.

Science. 2017 Apr 21;356(6335):311-315. doi: 10.1126/science.aaf4762.

PMID:
28428424
16.

Error-Robust Modes of the Retinal Population Code.

Prentice JS, Marre O, Ioffe ML, Loback AR, Tkačik G, Berry MJ 2nd.

PLoS Comput Biol. 2016 Nov 17;12(11):e1005148. doi: 10.1371/journal.pcbi.1005148. eCollection 2016 Nov. Erratum in: PLoS Comput Biol. 2017 Nov 10;13(11):e1005855.

17.

Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.

Hillenbrand P, Gerland U, Tkačik G.

PLoS One. 2016 Sep 27;11(9):e0163628. doi: 10.1371/journal.pone.0163628. eCollection 2016.

18.

Intrinsic limits to gene regulation by global crosstalk.

Friedlander T, Prizak R, Guet CC, Barton NH, Tkačik G.

Nat Commun. 2016 Aug 4;7:12307. doi: 10.1038/ncomms12307.

20.

Extending the dynamic range of transcription factor action by translational regulation.

Sokolowski TR, Walczak AM, Bialek W, Tkačik G.

Phys Rev E. 2016 Feb;93(2):022404. doi: 10.1103/PhysRevE.93.022404. Epub 2016 Feb 4.

21.

A General Approximation for the Dynamics of Quantitative Traits.

Bod'ová K, Tkačik G, Barton NH.

Genetics. 2016 Apr;202(4):1523-48. doi: 10.1534/genetics.115.184127. Epub 2016 Feb 17.

22.

Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.

Cepeda-Humerez SA, Rieckh G, Tkačik G.

Phys Rev Lett. 2015 Dec 11;115(24):248101. doi: 10.1103/PhysRevLett.115.248101. Epub 2015 Dec 8.

PMID:
26705657
23.

Dynamics of Transcription Factor Binding Site Evolution.

Tuğrul M, Paixão T, Barton NH, Tkačik G.

PLoS Genet. 2015 Nov 6;11(11):e1005639. doi: 10.1371/journal.pgen.1005639. eCollection 2015 Nov.

24.

Thermodynamics and signatures of criticality in a network of neurons.

Tkačik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ 2nd, Bialek W.

Proc Natl Acad Sci U S A. 2015 Sep 15;112(37):11508-13. doi: 10.1073/pnas.1514188112. Epub 2015 Sep 1.

25.

Optimizing information flow in small genetic networks. IV. Spatial coupling.

Sokolowski TR, Tkačik G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062710. Epub 2015 Jun 15.

PMID:
26172739
26.

High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.

Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ 2nd.

PLoS Comput Biol. 2015 Jul 1;11(7):e1004304. doi: 10.1371/journal.pcbi.1004304. eCollection 2015 Jul.

27.

Variance predicts salience in central sensory processing.

Hermundstad AM, Briguglio JJ, Conte MM, Victor JD, Balasubramanian V, Tkačik G.

Elife. 2014 Nov 14;3. doi: 10.7554/eLife.03722.

28.

Positional information, positional error, and readout precision in morphogenesis: a mathematical framework.

Tkačik G, Dubuis JO, Petkova MD, Gregor T.

Genetics. 2015 Jan;199(1):39-59. doi: 10.1534/genetics.114.171850. Epub 2014 Oct 31.

29.

Noise and information transmission in promoters with multiple internal States.

Rieckh G, Tkačik G.

Biophys J. 2014 Mar 4;106(5):1194-204. doi: 10.1016/j.bpj.2014.01.014.

30.

Adaptation to changes in higher-order stimulus statistics in the salamander retina.

Tkačik G, Ghosh A, Schneidman E, Segev R.

PLoS One. 2014 Jan 21;9(1):e85841. doi: 10.1371/journal.pone.0085841. eCollection 2014.

31.

Searching for collective behavior in a large network of sensory neurons.

Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ 2nd.

PLoS Comput Biol. 2014 Jan;10(1):e1003408. doi: 10.1371/journal.pcbi.1003408. Epub 2014 Jan 2.

32.

Transformation of stimulus correlations by the retina.

Simmons KD, Prentice JS, Tkačik G, Homann J, Yee HK, Palmer SE, Nelson PC, Balasubramanian V.

PLoS Comput Biol. 2013;9(12):e1003344. doi: 10.1371/journal.pcbi.1003344. Epub 2013 Dec 5.

33.

Positional information, in bits.

Dubuis JO, Tkacik G, Wieschaus EF, Gregor T, Bialek W.

Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16301-8. doi: 10.1073/pnas.1315642110. Epub 2013 Oct 2.

34.

Learning quadratic receptive fields from neural responses to natural stimuli.

Rajan K, Marre O, Tkačik G.

Neural Comput. 2013 Jul;25(7):1661-92. doi: 10.1162/NECO_a_00463. Epub 2013 Apr 22. Review.

PMID:
23607557
35.

Stimulus-dependent maximum entropy models of neural population codes.

Granot-Atedgi E, Tkačik G, Segev R, Schneidman E.

PLoS Comput Biol. 2013;9(3):e1002922. doi: 10.1371/journal.pcbi.1002922. Epub 2013 Mar 14.

36.

Retinal metric: a stimulus distance measure derived from population neural responses.

Tkačik G, Granot-Atedgi E, Segev R, Schneidman E.

Phys Rev Lett. 2013 Feb 1;110(5):058104. Epub 2013 Jan 28.

PMID:
23414051
37.

Statistical thermodynamics of natural images.

Stephens GJ, Mora T, Tkačik G, Bialek W.

Phys Rev Lett. 2013 Jan 4;110(1):018701. Epub 2013 Jan 2.

PMID:
23383852
38.

Optimizing information flow in small genetic networks. III. A self-interacting gene.

Tkačik G, Walczak AM, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Apr;85(4 Pt 1):041903. Epub 2012 Apr 5.

PMID:
22680494
39.

Fast, scalable, Bayesian spike identification for multi-electrode arrays.

Prentice JS, Homann J, Simmons KD, Tkačik G, Balasubramanian V, Nelson PC.

PLoS One. 2011;6(7):e19884. doi: 10.1371/journal.pone.0019884. Epub 2011 Jul 20.

40.

Natural images from the birthplace of the human eye.

Tkačik G, Garrigan P, Ratliff C, Milčinski G, Klein JM, Seyfarth LH, Sterling P, Brainard DH, Balasubramanian V.

PLoS One. 2011;6(6):e20409. doi: 10.1371/journal.pone.0020409. Epub 2011 Jun 16.

41.

Information transmission in genetic regulatory networks: a review.

Tkačik G, Walczak AM.

J Phys Condens Matter. 2011 Apr 20;23(15):153102. doi: 10.1088/0953-8984/23/15/153102. Epub 2011 Apr 1. Review.

PMID:
21460423
42.

The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA.

Little SC, Tkačik G, Kneeland TB, Wieschaus EF, Gregor T.

PLoS Biol. 2011 Mar;9(3):e1000596. doi: 10.1371/journal.pbio.1000596. Epub 2011 Mar 1.

43.

Local statistics in natural scenes predict the saliency of synthetic textures.

Tkacik G, Prentice JS, Victor JD, Balasubramanian V.

Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):18149-54. doi: 10.1073/pnas.0914916107. Epub 2010 Oct 5.

44.

Optimal population coding by noisy spiking neurons.

Tkacik G, Prentice JS, Balasubramanian V, Schneidman E.

Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14419-24. doi: 10.1073/pnas.1004906107. Epub 2010 Jul 26.

45.

Optimizing information flow in small genetic networks. II. Feed-forward interactions.

Walczak AM, Tkacik G, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Apr;81(4 Pt 1):041905. Epub 2010 Apr 6.

PMID:
20481751
46.

Optimizing information flow in small genetic networks.

Tkacik G, Walczak AM, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Sep;80(3 Pt 1):031920. Epub 2009 Sep 29.

47.

The dynamics of adaptation on correlated fitness landscapes.

Kryazhimskiy S, Tkacik G, Plotkin JB.

Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18638-43. doi: 10.1073/pnas.0905497106. Epub 2009 Oct 26.

48.

Diffusion, dimensionality, and noise in transcriptional regulation.

Tkacik G, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 May;79(5 Pt 1):051901. Epub 2009 May 4.

PMID:
19518474
49.

Information capacity of genetic regulatory elements.

Tkacik G, Callan CG Jr, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jul;78(1 Pt 1):011910. Epub 2008 Jul 21.

50.

Information flow and optimization in transcriptional regulation.

Tkacik G, Callan CG Jr, Bialek W.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12265-70. doi: 10.1073/pnas.0806077105. Epub 2008 Aug 21.

Supplemental Content

Loading ...
Support Center