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Items: 1 to 50 of 61

1.

Intercostal artery stent grafting to prevent paraplegia during endovascular treatment of an intercostal loop graft aneurysm after thoracoabdominal aortic aneurysm repair.

Tjaden BL Jr, Estrera AL, Afifi RO.

J Thorac Cardiovasc Surg. 2019 Apr 8. pii: S0022-5223(19)30781-0. doi: 10.1016/j.jtcvs.2019.04.003. [Epub ahead of print] No abstract available.

PMID:
31053441
2.

The Carbon Switch at the Level of Pyruvate and Phosphoenolpyruvate in Sulfolobus solfataricus P2.

Haferkamp P, Tjaden B, Shen L, Bräsen C, Kouril T, Siebers B.

Front Microbiol. 2019 Apr 12;10:757. doi: 10.3389/fmicb.2019.00757. eCollection 2019.

3.

A computational system for identifying operons based on RNA-seq data.

Tjaden B.

Methods. 2019 Apr 4. pii: S1046-2023(18)30342-6. doi: 10.1016/j.ymeth.2019.03.026. [Epub ahead of print] Review.

4.

Effects of mindfulness training on perceived stress, self-compassion, and self-reflection of primary care physicians: a mixed-methods study.

van Wietmarschen H, Tjaden B, van Vliet M, Battjes-Fries M, Jong M.

BJGP Open. 2018 Nov 28;2(4):bjgpopen18X101621. doi: 10.3399/bjgpopen18X101621. eCollection 2018 Dec.

5.

Transcriptome Analysis of Neisseria gonorrhoeae during Natural Infection Reveals Differential Expression of Antibiotic Resistance Determinants between Men and Women.

Nudel K, McClure R, Moreau M, Briars E, Abrams AJ, Tjaden B, Su XH, Trees D, Rice PA, Massari P, Genco CA.

mSphere. 2018 Jun 27;3(3). pii: e00312-18. doi: 10.1128/mSphereDirect.00312-18. Print 2018 Aug 29.

6.

Outcomes from the Gore Global Registry for Endovascular Aortic Treatment in patients undergoing thoracic endovascular aortic repair for type B dissection.

Tjaden BL Jr, Sandhu H, Miller C, Gable D, Trimarchi S, Weaver F, Azizzadeh A.

J Vasc Surg. 2018 Nov;68(5):1314-1323. doi: 10.1016/j.jvs.2018.03.391. Epub 2018 Jun 23.

PMID:
29941315
7.

Small RNA profiling in Mycobacterium tuberculosis identifies MrsI as necessary for an anticipatory iron sparing response.

Gerrick ER, Barbier T, Chase MR, Xu R, François J, Lin VH, Szucs MJ, Rock JM, Ahmad R, Tjaden B, Livny J, Fortune SM.

Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6464-6469. doi: 10.1073/pnas.1718003115. Epub 2018 Jun 5.

8.

Prescribing Bioidentical Menopausal Hormone Therapy: A Survey of Physician Views and Practices.

Dubaut JP, Dong F, Tjaden BL, Grainger DA, Duong J, Tatpati LL.

J Womens Health (Larchmt). 2018 Jul;27(7):859-866. doi: 10.1089/jwh.2017.6637. Epub 2018 Mar 27.

PMID:
29583064
9.

Identifying the Cause of Rupture of Li-Ion Batteries during Thermal Runaway.

Finegan DP, Darcy E, Keyser M, Tjaden B, Heenan TMM, Jervis R, Bailey JJ, Vo NT, Magdysyuk OV, Drakopoulos M, Michiel MD, Rack A, Hinds G, Brett DJL, Shearing PR.

Adv Sci (Weinh). 2017 Oct 27;5(1):1700369. doi: 10.1002/advs.201700369. eCollection 2018 Jan.

10.

Emergent endovascular repair of a ruptured giant internal iliac artery aneurysm using an inverted iliac limb endograft.

Tjaden BL Jr, Afifi RO, Safi HJ.

J Vasc Surg Cases Innov Tech. 2017 Jul 24;3(3):185. doi: 10.1016/j.jvscit.2017.04.007. eCollection 2017 Sep. No abstract available.

11.

Endovascular therapy in Marfan syndrome: PRO.

Tjaden B Jr, Azizzadeh A.

Ann Cardiothorac Surg. 2017 Nov;6(6):672-676. doi: 10.21037/acs.2017.10.06.

12.

Identification and Characterization of Serotype-Specific Variation in Group A Streptococcus Pilus Expression.

Calfee G, Danger JL, Jain I, Miller EW, Sarkar P, Tjaden B, Kreikemeyer B, Sumby P.

Infect Immun. 2018 Jan 22;86(2). pii: e00792-17. doi: 10.1128/IAI.00792-17. Print 2018 Feb.

13.

Probing the sRNA regulatory landscape of P. aeruginosa: post-transcriptional control of determinants of pathogenicity and antibiotic susceptibility.

Zhang YF, Han K, Chandler CE, Tjaden B, Ernst RK, Lory S.

Mol Microbiol. 2017 Dec;106(6):919-937. doi: 10.1111/mmi.13857. Epub 2017 Nov 2.

14.

GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation.

Han K, Tjaden B, Lory S.

Nat Microbiol. 2016 Dec 22;2:16239. doi: 10.1038/nmicrobiol.2016.239.

15.

Investigating lithium-ion battery materials during overcharge-induced thermal runaway: an operando and multi-scale X-ray CT study.

Finegan DP, Scheel M, Robinson JB, Tjaden B, Di Michiel M, Hinds G, Brett DJ, Shearing PR.

Phys Chem Chem Phys. 2016 Nov 16;18(45):30912-30919.

PMID:
27388638
16.

The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women.

McClure R, Nudel K, Massari P, Tjaden B, Su X, Rice PA, Genco CA.

PLoS One. 2015 Aug 5;10(8):e0133982. doi: 10.1371/journal.pone.0133982. eCollection 2015.

17.

In-operando high-speed tomography of lithium-ion batteries during thermal runaway.

Finegan DP, Scheel M, Robinson JB, Tjaden B, Hunt I, Mason TJ, Millichamp J, Di Michiel M, Offer GJ, Hinds G, Brett DJL, Shearing PR.

Nat Commun. 2015 Apr 28;6:6924. doi: 10.1038/ncomms7924.

18.

De novo assembly of bacterial transcriptomes from RNA-seq data.

Tjaden B.

Genome Biol. 2015 Jan 13;16:1. doi: 10.1186/s13059-014-0572-2.

19.

Pediatric intussusception associated with Enterobius vermicularis.

Tjaden BL Jr, Schropp KP.

J Pediatr. 2014 Dec;165(6):1272-1272.e1. doi: 10.1016/j.jpeds.2014.08.006. Epub 2014 Sep 18. No abstract available.

PMID:
25241176
20.

Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions.

McClure R, Tjaden B, Genco C.

Front Microbiol. 2014 Aug 28;5:456. doi: 10.3389/fmicb.2014.00456. eCollection 2014.

21.

TargetRNA2: identifying targets of small regulatory RNAs in bacteria.

Kery MB, Feldman M, Livny J, Tjaden B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W124-9. doi: 10.1093/nar/gku317. Epub 2014 Apr 21.

22.

Computational analysis of bacterial RNA-Seq data.

McClure R, Balasubramanian D, Sun Y, Bobrovskyy M, Sumby P, Genco CA, Vanderpool CK, Tjaden B.

Nucleic Acids Res. 2013 Aug;41(14):e140. doi: 10.1093/nar/gkt444. Epub 2013 May 28.

23.

Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets.

Zhang A, Schu DJ, Tjaden BC, Storz G, Gottesman S.

J Mol Biol. 2013 Oct 9;425(19):3678-97. doi: 10.1016/j.jmb.2013.01.006. Epub 2013 Jan 11.

24.

Computational identification of sRNA targets.

Tjaden B.

Methods Mol Biol. 2012;905:227-34. doi: 10.1007/978-1-61779-949-5_14.

PMID:
22736007
25.

Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax.

Plagens A, Tjaden B, Hagemann A, Randau L, Hensel R.

J Bacteriol. 2012 May;194(10):2491-500. doi: 10.1128/JB.00206-12. Epub 2012 Mar 9.

26.

tRNA-like elements in Haloferax volcanii.

Hölzle A, Stoll B, Schnattinger T, Schöning U, Tjaden B, Marchfelder A.

Biochimie. 2012 Apr;94(4):940-6. doi: 10.1016/j.biochi.2011.12.002. Epub 2011 Dec 8.

27.

The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes.

Chaston JM, Suen G, Tucker SL, Andersen AW, Bhasin A, Bode E, Bode HB, Brachmann AO, Cowles CE, Cowles KN, Darby C, de Léon L, Drace K, Du Z, Givaudan A, Herbert Tran EE, Jewell KA, Knack JJ, Krasomil-Osterfeld KC, Kukor R, Lanois A, Latreille P, Leimgruber NK, Lipke CM, Liu R, Lu X, Martens EC, Marri PR, Médigue C, Menard ML, Miller NM, Morales-Soto N, Norton S, Ogier JC, Orchard SS, Park D, Park Y, Qurollo BA, Sugar DR, Richards GR, Rouy Z, Slominski B, Slominski K, Snyder H, Tjaden BC, van der Hoeven R, Welch RD, Wheeler C, Xiang B, Barbazuk B, Gaudriault S, Goodner B, Slater SC, Forst S, Goldman BS, Goodrich-Blair H.

PLoS One. 2011;6(11):e27909. doi: 10.1371/journal.pone.0027909. Epub 2011 Nov 18.

28.

The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.

Siebers B, Zaparty M, Raddatz G, Tjaden B, Albers SV, Bell SD, Blombach F, Kletzin A, Kyrpides N, Lanz C, Plagens A, Rampp M, Rosinus A, von Jan M, Makarova KS, Klenk HP, Schuster SC, Hensel R.

PLoS One. 2011;6(10):e24222. doi: 10.1371/journal.pone.0024222. Epub 2011 Oct 7.

29.

Assessing computational tools for the discovery of small RNA genes in bacteria.

Lu X, Goodrich-Blair H, Tjaden B.

RNA. 2011 Sep;17(9):1635-47. doi: 10.1261/rna.2689811. Epub 2011 Jul 18.

30.

Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii.

Babski J, Tjaden B, Voss B, Jellen-Ritter A, Marchfelder A, Hess WR, Soppa J.

RNA Biol. 2011 Sep-Oct;8(5):806-16. doi: 10.4161/rna.8.5.16039. Epub 2011 Jun 29.

PMID:
21712649
31.

Computational prediction and transcriptional analysis of sRNAs in Nitrosomonas europaea.

Gvakharia BO, Tjaden B, Vajrala N, Sayavedra-Soto LA, Arp DJ.

FEMS Microbiol Lett. 2010 Nov;312(1):46-54. doi: 10.1111/j.1574-6968.2010.02095.x. Epub 2010 Sep 14.

32.

Small RNAs of the halophilic archaeon Haloferax volcanii.

Soppa J, Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Fischer S, Granzow M, Voss B, Hess WR, Tjaden B, Marchfelder A.

Biochem Soc Trans. 2009 Feb;37(Pt 1):133-6. doi: 10.1042/BST0370133.

PMID:
19143617
33.

Small non-coding RNAs in Streptomyces coelicolor.

Swiercz JP, Hindra, Bobek J, Bobek J, Haiser HJ, Di Berardo C, Tjaden B, Elliot MA.

Nucleic Acids Res. 2008 Dec;36(22):7240-51. doi: 10.1093/nar/gkn898. Epub 2008 Nov 12.

34.

The central carbohydrate metabolism of the hyperthermophilic crenarchaeote Thermoproteus tenax: pathways and insights into their regulation.

Zaparty M, Tjaden B, Hensel R, Siebers B.

Arch Microbiol. 2008 Sep;190(3):231-45. doi: 10.1007/s00203-008-0375-5. Epub 2008 May 20. Review.

PMID:
18491075
35.

TargetRNA: a tool for predicting targets of small RNA action in bacteria.

Tjaden B.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W109-13. doi: 10.1093/nar/gkn264. Epub 2008 May 13.

36.

Prediction of small, noncoding RNAs in bacteria using heterogeneous data.

Tjaden B.

J Math Biol. 2008 Jan;56(1-2):183-200. Epub 2007 Mar 13.

PMID:
17354017
37.

A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis.

Mellin JR, Goswami S, Grogan S, Tjaden B, Genco CA.

J Bacteriol. 2007 May;189(10):3686-94. Epub 2007 Mar 9.

38.

Use of a gestational carrier for a patient with recurrent adverse pregnancy outcomes from early onset severe pre-eclampsia.

Farley DM, Grainger DA, Tjaden BL, Frazier LM, Maki JE.

Fertil Steril. 2007 Jan;87(1):189.e1-3. Epub 2006 Nov 2.

PMID:
17084396
39.

Target prediction for small, noncoding RNAs in bacteria.

Tjaden B, Goodwin SS, Opdyke JA, Guillier M, Fu DX, Gottesman S, Storz G.

Nucleic Acids Res. 2006 May 22;34(9):2791-802. Print 2006.

40.
41.
42.

The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea: a re-evaluation.

Ahmed H, Ettema TJ, Tjaden B, Geerling AC, van der Oost J, Siebers B.

Biochem J. 2005 Sep 1;390(Pt 2):529-40.

43.

Structure and function of a regulated archaeal triosephosphate isomerase adapted to high temperature.

Walden H, Taylor GL, Lorentzen E, Pohl E, Lilie H, Schramm A, Knura T, Stubbe K, Tjaden B, Hensel R.

J Mol Biol. 2004 Sep 17;342(3):861-75.

PMID:
15342242
44.

Embden-Meyerhof-Parnas and Entner-Doudoroff pathways in Thermoproteus tenax: metabolic parallelism or specific adaptation?

Ahmed H, Tjaden B, Hensel R, Siebers B.

Biochem Soc Trans. 2004 Apr;32(Pt 2):303-4. Review.

PMID:
15046594
45.

Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data.

Siebers B, Tjaden B, Michalke K, Dörr C, Ahmed H, Zaparty M, Gordon P, Sensen CW, Zibat A, Klenk HP, Schuster SC, Hensel R.

J Bacteriol. 2004 Apr;186(7):2179-94.

46.

Global analysis of small RNA and mRNA targets of Hfq.

Zhang A, Wassarman KM, Rosenow C, Tjaden BC, Storz G, Gottesman S.

Mol Microbiol. 2003 Nov;50(4):1111-24.

47.

Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.

Kolker E, Purvine S, Galperin MY, Stolyar S, Goodlett DR, Nesvizhskii AI, Keller A, Xie T, Eng JK, Yi E, Hood L, Picone AF, Cherny T, Tjaden BC, Siegel AF, Reilly TJ, Makarova KS, Palsson BO, Smith AL.

J Bacteriol. 2003 Aug;185(15):4593-602.

48.
49.

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays.

Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C.

Nucleic Acids Res. 2002 Sep 1;30(17):3732-8.

50.

Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis.

Tjaden B, Haynor DR, Stolyar S, Rosenow C, Kolker E.

Bioinformatics. 2002;18 Suppl 1:S337-44.

PMID:
12169564

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