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Items: 37

1.

Microbial communities of the house fly Musca domestica vary with geographical location and habitat.

Park R, Dzialo MC, Spaepen S, Nsabimana D, Gielens K, Devriese H, Crauwels S, Tito RY, Raes J, Lievens B, Verstrepen KJ.

Microbiome. 2019 Nov 8;7(1):147. doi: 10.1186/s40168-019-0748-9.

2.

Citroniella saccharovorans gen. nov. sp. nov., a member of the family Peptoniphilaceae isolated from a human fecal sample from a coastal traditional community member.

Patel NB, Obregón-Tito AJ, Tito RY, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Lewis CM Jr, Lawson PA.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1142-1148. doi: 10.1099/ijsem.0.003287. Epub 2019 Feb 15.

PMID:
30767850
3.

The neuroactive potential of the human gut microbiota in quality of life and depression.

Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, Claes S, Van Oudenhove L, Zhernakova A, Vieira-Silva S, Raes J.

Nat Microbiol. 2019 Apr;4(4):623-632. doi: 10.1038/s41564-018-0337-x. Epub 2019 Feb 4.

PMID:
30718848
4.

Metformin induces weight loss associated with gut microbiota alteration in non-diabetic obese women: a randomized double-blind clinical trial.

Ejtahed HS, Tito RY, Siadat SD, Hasani-Ranjbar S, Hoseini-Tavassol Z, Rymenans L, Verbeke K, Soroush AR, Raes J, Larijani B.

Eur J Endocrinol. 2018 Dec 1. pii: EJE-18-0826.R1. doi: 10.1530/EJE-18-0826. [Epub ahead of print]

PMID:
30540558
5.

Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota.

Tito RY, Chaffron S, Caenepeel C, Lima-Mendez G, Wang J, Vieira-Silva S, Falony G, Hildebrand F, Darzi Y, Rymenans L, Verspecht C, Bork P, Vermeire S, Joossens M, Raes J.

Gut. 2019 Jul;68(7):1180-1189. doi: 10.1136/gutjnl-2018-316106. Epub 2018 Aug 31.

6.

Quantitative microbiome profiling links gut community variation to microbial load.

Vandeputte D, Kathagen G, D'hoe K, Vieira-Silva S, Valles-Colomer M, Sabino J, Wang J, Tito RY, De Commer L, Darzi Y, Vermeire S, Falony G, Raes J.

Nature. 2017 Nov 23;551(7681):507-511. doi: 10.1038/nature24460. Epub 2017 Nov 15.

PMID:
29143816
7.

Practical considerations for large-scale gut microbiome studies.

Vandeputte D, Tito RY, Vanleeuwen R, Falony G, Raes J.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S154-S167. doi: 10.1093/femsre/fux027. Review.

PMID:
28830090
8.

Brief Report: Dialister as a Microbial Marker of Disease Activity in Spondyloarthritis.

Tito RY, Cypers H, Joossens M, Varkas G, Van Praet L, Glorieus E, Van den Bosch F, De Vos M, Raes J, Elewaut D.

Arthritis Rheumatol. 2017 Jan;69(1):114-121. doi: 10.1002/art.39802. Epub 2016 Dec 1.

9.

Oral microbiome diversity among Cheyenne and Arapaho individuals from Oklahoma.

Ozga AT, Sankaranarayanan K, Tito RY, Obregon-Tito AJ, Foster MW, Tallbull G, Spicer P, Warinner CG, Lewis CM Jr.

Am J Phys Anthropol. 2016 Oct;161(2):321-7. doi: 10.1002/ajpa.23033. Epub 2016 Jun 30.

PMID:
27357925
10.

Population-level analysis of gut microbiome variation.

Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, Kurilshikov A, Bonder MJ, Valles-Colomer M, Vandeputte D, Tito RY, Chaffron S, Rymenans L, Verspecht C, De Sutter L, Lima-Mendez G, D'hoe K, Jonckheere K, Homola D, Garcia R, Tigchelaar EF, Eeckhaudt L, Fu J, Henckaerts L, Zhernakova A, Wijmenga C, Raes J.

Science. 2016 Apr 29;352(6285):560-4. doi: 10.1126/science.aad3503. Epub 2016 Apr 28.

11.

Peptoniphilus catoniae sp. nov., isolated from a human faecal sample from a traditional Peruvian coastal community.

Patel NB, Tito RY, Obregón-Tito AJ, O'Neal L, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Lewis CM, Lawson PA.

Int J Syst Evol Microbiol. 2016 May;66(5):2019-2024. doi: 10.1099/ijsem.0.000985. Epub 2016 Feb 23.

12.

Origins of an Unmarked Georgia Cemetery Using Ancient DNA Analysis.

Ozga AT, Tito RY, Kemp BM, Matternes H, Obregon-Tito A, Neal L, Lewis CM Jr.

Hum Biol. 2015 Apr;87(2):109-21. doi: 10.13110/humanbiology.87.2.0109.

PMID:
26829294
13.

Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma.

Sankaranarayanan K, Ozga AT, Warinner C, Tito RY, Obregon-Tito AJ, Xu J, Gaffney PM, Jervis LL, Cox D, Stephens L, Foster M, Tallbull G, Spicer P, Lewis CM.

Curr Biol. 2015 Dec 21;25(24):3161-9. doi: 10.1016/j.cub.2015.10.060. Epub 2015 Dec 6.

14.

Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru.

O'Neal L, Obregón-Tito AJ, Tito RY, Ozga AT, Polo SI, Lewis CM Jr, Lawson PA.

Anaerobe. 2015 Oct;35(Pt B):33-7. doi: 10.1016/j.anaerobe.2015.06.005. Epub 2015 Jun 26.

15.

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates.

Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J.

Gut. 2016 Jan;65(1):57-62. doi: 10.1136/gutjnl-2015-309618. Epub 2015 Jun 11.

16.

Population genetic structure of traditional populations in the Peruvian Central Andes and implications for South American population history.

Cabana GS, Lewis CM Jr, Tito RY, Covey RA, Cáceres AM, Cruz AF, Durand D, Housman G, Hulsey BI, Iannacone GC, López PW, Martínez R, Medina Á, Dávila OO, Pinto KP, Santillán SI, Domínguez PR, Rubel M, Smith HF, Smith SE, Massa VR, Lizárraga B, Stone AC.

Hum Biol. 2014 Summer;86(3):147-65. Erratum in: Hum Biol. 2015 Oct;87(4):376-377.

PMID:
25836744
17.

Subsistence strategies in traditional societies distinguish gut microbiomes.

Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Zech Xu Z, Van Treuren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, Guija-Poma E, Troncoso-Corzo L, Warinner C, Ozga AT, Lewis CM.

Nat Commun. 2015 Mar 25;6:6505. doi: 10.1038/ncomms7505.

18.

Ezakiella peruensis gen. nov., sp. nov. isolated from human fecal sample from a coastal traditional community in Peru.

Patel NB, Tito RY, Obregón-Tito AJ, O'Neal L, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Hamada M, Uchino Y, Lewis CM Jr, Lawson PA.

Anaerobe. 2015 Apr;32:43-48. doi: 10.1016/j.anaerobe.2014.12.002. Epub 2014 Dec 4.

19.

Patterns of genetic variation and the role of selection in HTR1A and HTR1B in macaques (Macaca).

Shattuck MR, Satkoski-Trask J, Deinard A, Tito RY, Smith DG, Melnick DJ, Malhi RS.

BMC Genet. 2014 Nov 7;15:116. doi: 10.1186/s12863-014-0116-5.

20.

Pathogens and host immunity in the ancient human oral cavity.

Warinner C, Rodrigues JF, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-García DC, Eppler E, Seiler R, Hansen LH, Castruita JA, Barkow-Oesterreicher S, Teoh KY, Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM Jr, Collins MJ, Gilbert MT, Rühli F, Cappellini E.

Nat Genet. 2014 Apr;46(4):336-44. doi: 10.1038/ng.2906. Epub 2014 Feb 23.

21.

The evolutionary history of SLC6A4 and the role of plasticity in Macaca.

Shattuck MR, Satkoski-Trask J, Deinard A, Tito RY, Smith DG, Malhi RS.

Am J Phys Anthropol. 2014 Apr;153(4):605-16. doi: 10.1002/ajpa.22460. Epub 2013 Dec 24.

22.

Clarifying Prehistoric Parasitism from a Complementary Morphological and Molecular Approach.

Cleeland LM, Reichard MV, Tito RY, Reinhard KJ, Lewis CM Jr.

J Archaeol Sci. 2013 Jul 1;40(7):3060-3066.

23.

Insights from characterizing extinct human gut microbiomes.

Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM Jr.

PLoS One. 2012;7(12):e51146. doi: 10.1371/journal.pone.0051146. Epub 2012 Dec 12.

24.

Possible positive selection for an arsenic-protective haplotype in humans.

Schlebusch CM, Lewis CM Jr, Vahter M, Engström K, Tito RY, Obregón-Tito AJ, Huerta D, Polo SI, Medina ÁC, Brutsaert TD, Concha G, Jakobsson M, Broberg K.

Environ Health Perspect. 2013 Jan;121(1):53-8. doi: 10.1289/ehp.1205504. Epub 2012 Oct 16.

25.

The Human Microbiome Project: lessons from human genomics.

Lewis CM Jr, Obregón-Tito A, Tito RY, Foster MW, Spicer PG.

Trends Microbiol. 2012 Jan;20(1):1-4. doi: 10.1016/j.tim.2011.10.004. Epub 2011 Nov 21.

26.

Brief communication: DNA from early Holocene American dog.

Tito RY, Belknap SL 3rd, Sobolik KD, Ingraham RC, Cleeland LM, Lewis CM Jr.

Am J Phys Anthropol. 2011 Aug;145(4):653-7. doi: 10.1002/ajpa.21526. Epub 2011 May 3.

27.

Haplotype structure and divergence at human and chimpanzee serotonin transporter and receptor genes: implications for behavioral disorder association analyses.

Claw KG, Tito RY, Stone AC, Verrelli BC.

Mol Biol Evol. 2010 Jul;27(7):1518-29. doi: 10.1093/molbev/msq030. Epub 2010 Jan 29.

28.

Brief communication: mitochondrial haplotype C4c confirmed as a founding genome in the Americas.

Malhi RS, Cybulski JS, Tito RY, Johnson J, Harry H, Dan C.

Am J Phys Anthropol. 2010 Mar;141(3):494-7. doi: 10.1002/ajpa.21238.

PMID:
20027611
29.

Haplotypic background of a private allele at high frequency in the Americas.

Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA.

Mol Biol Evol. 2009 May;26(5):995-1016. doi: 10.1093/molbev/msp024. Epub 2009 Feb 12.

30.

Phylotyping and functional analysis of two ancient human microbiomes.

Tito RY, Macmil S, Wiley G, Najar F, Cleeland L, Qu C, Wang P, Romagne F, Leonard S, Ruiz AJ, Reinhard K, Roe BA, Lewis CM Jr.

PLoS One. 2008;3(11):e3703. doi: 10.1371/journal.pone.0003703. Epub 2008 Nov 11.

31.

Pyrosequencing as a method for SNP identification in the rhesus macaque (Macaca mulatta).

Satkoski JA, Malhi R, Kanthaswamy S, Tito R, Malladi V, Smith D.

BMC Genomics. 2008 May 29;9:256. doi: 10.1186/1471-2164-9-256.

32.

Mitochondrial DNA and the peopling of South America.

Lewis CM Jr, Lizárraga B, Tito RY, López PW, Iannacone GC, Medina A, Martínez R, Polo SI, De La Cruz AF, Cáceres AM, Stone AC.

Hum Biol. 2007 Apr;79(2):159-78.

PMID:
18027812
33.

MamuSNP: a resource for Rhesus Macaque (Macaca mulatta) genomics.

Malhi RS, Sickler B, Lin D, Satkoski J, Tito RY, George D, Kanthaswamy S, Smith DG.

PLoS One. 2007 May 9;2(5):e438.

34.

The evolutionary history of human and chimpanzee Y-chromosome gene loss.

Perry GH, Tito RY, Verrelli BC.

Mol Biol Evol. 2007 Mar;24(3):853-9. Epub 2007 Jan 11.

PMID:
17218643
35.

Y-chromosomal haplotypes for the PowerPlex Y for twelve STRs in a Peruvian population sample.

Iannacone GC, Tito RY, Lopez PW, Medina ME, Lizarraga B.

J Forensic Sci. 2005 Jan;50(1):239-42. No abstract available.

PMID:
15831032
36.

Land, language, and loci: mtDNA in Native Americans and the genetic history of Peru.

Lewis CM Jr, Tito RY, Lizárraga B, Stone AC.

Am J Phys Anthropol. 2005 Jul;127(3):351-60.

PMID:
15584069
37.

Genetic diversity of sixteen STRs in the Peruvian Mesa Redonda Lima population.

Tito RY, López PW, Iannacone GC, Lizárraga B.

J Forensic Sci. 2004 Jul;49(4):852-3. No abstract available.

PMID:
15317213

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