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Items: 29

1.

Corrigendum: A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.

Huang R, Ding J, Gao K, Cruz de Carvalho MH, Tirichine L, Bowler C, Lin X.

Front Microbiol. 2019 Feb 8;10:158. doi: 10.3389/fmicb.2019.00158. eCollection 2019.

2.

A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.

Huang R, Ding J, Gao K, Cruz de Carvalho MH, Tirichine L, Bowler C, Lin X.

Front Microbiol. 2019 Jan 14;9:3342. doi: 10.3389/fmicb.2018.03342. eCollection 2018. Erratum in: Front Microbiol. 2019 Feb 08;10:158.

3.

Comparative characterization of putative chitin deacetylases from Phaeodactylum tricornutum and Thalassiosira pseudonana highlights the potential for distinct chitin-based metabolic processes in diatoms.

Shao Z, Thomas Y, Hembach L, Xing X, Duan D, Moerschbacher BM, Bulone V, Tirichine L, Bowler C.

New Phytol. 2019 Mar;221(4):1890-1905. doi: 10.1111/nph.15510. Epub 2018 Nov 15.

PMID:
30288745
4.

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom.

Murik O, Tirichine L, Prihoda J, Thomas Y, Araújo WL, Allen AE, Fernie AR, Bowler C.

New Phytol. 2019 Feb;221(3):1303-1316. doi: 10.1111/nph.15479. Epub 2018 Nov 22.

PMID:
30216452
5.

Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris.

Nomaguchi T, Maeda Y, Yoshino T, Asahi T, Tirichine L, Bowler C, Tanaka T.

BMC Genomics. 2018 May 4;19(1):330. doi: 10.1186/s12864-018-4691-0.

6.

Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms.

Rastogi A, Maheswari U, Dorrell RG, Vieira FRJ, Maumus F, Kustka A, McCarthy J, Allen AE, Kersey P, Bowler C, Tirichine L.

Sci Rep. 2018 Mar 19;8(1):4834. doi: 10.1038/s41598-018-23106-x.

7.

A global ocean atlas of eukaryotic genes.

Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C, Wincker P.

Nat Commun. 2018 Jan 25;9(1):373. doi: 10.1038/s41467-017-02342-1.

8.

Recent progress in diatom genomics and epigenomics.

Tirichine L, Rastogi A, Bowler C.

Curr Opin Plant Biol. 2017 Apr;36:46-55. doi: 10.1016/j.pbi.2017.02.001. Epub 2017 Feb 20. Review.

PMID:
28226268
9.

PhytoCRISP-Ex: a web-based and stand-alone application to find specific target sequences for CRISPR/CAS editing.

Rastogi A, Murik O, Bowler C, Tirichine L.

BMC Bioinformatics. 2016 Jul 1;17(1):261. doi: 10.1186/s12859-016-1143-1.

10.

Ultrastructure and Membrane Traffic During Cell Division in the Marine Pennate Diatom Phaeodactylum tricornutum.

Tanaka A, De Martino A, Amato A, Montsant A, Mathieu B, Rostaing P, Tirichine L, Bowler C.

Protist. 2015 Nov;166(5):506-21. doi: 10.1016/j.protis.2015.07.005. Epub 2015 Aug 14.

11.

Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms.

Bailleul B, Berne N, Murik O, Petroutsos D, Prihoda J, Tanaka A, Villanova V, Bligny R, Flori S, Falconet D, Krieger-Liszkay A, Santabarbara S, Rappaport F, Joliot P, Tirichine L, Falkowski PG, Cardol P, Bowler C, Finazzi G.

Nature. 2015 Aug 20;524(7565):366-9. doi: 10.1038/nature14599. Epub 2015 Jul 13.

12.

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum.

Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L.

Genome Biol. 2015 May 20;16:102. doi: 10.1186/s13059-015-0671-8.

13.

A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake.

Morrissey J, Sutak R, Paz-Yepes J, Tanaka A, Moustafa A, Veluchamy A, Thomas Y, Botebol H, Bouget FY, McQuaid JB, Tirichine L, Allen AE, Lesuisse E, Bowler C.

Curr Biol. 2015 Feb 2;25(3):364-371. doi: 10.1016/j.cub.2014.12.004. Epub 2014 Dec 31.

14.

Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in Phaeodactylum tricornutum.

Abida H, Dolch LJ, Meï C, Villanova V, Conte M, Block MA, Finazzi G, Bastien O, Tirichine L, Bowler C, Rébeillé F, Petroutsos D, Jouhet J, Maréchal E.

Plant Physiol. 2015 Jan;167(1):118-36. doi: 10.1104/pp.114.252395. Epub 2014 Dec 8.

15.

Re-print of "Histone extraction protocol from the two model diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana".

Tirichine L, Lin X, Thomas Y, Lombard B, Loew D, Bowler C.

Mar Genomics. 2014 Aug;16:67-71. doi: 10.1016/j.margen.2014.05.003. Epub 2014 May 22.

PMID:
24859489
16.

Histone extraction protocol from the two model diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana.

Tirichine L, Lin X, Thomas Y, Lombard B, Loew D, Bowler C.

Mar Genomics. 2014 Feb;13:21-5. doi: 10.1016/j.margen.2013.11.006. Epub 2013 Dec 4.

PMID:
24315927
17.

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum.

Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L.

Nat Commun. 2013;4:2091. doi: 10.1038/ncomms3091. Erratum in: Nat Commun. 2014;5:3028. Allen, Andrew [corrected to Allen, Andrew E].

PMID:
23820484
18.

Protocol: Chromatin immunoprecipitation (ChIP) methodology to investigate histone modifications in two model diatom species.

Lin X, Tirichine L, Bowler C.

Plant Methods. 2012 Dec 7;8(1):48. doi: 10.1186/1746-4811-8-48.

19.

Chloroplast-mitochondria cross-talk in diatoms.

Prihoda J, Tanaka A, de Paula WB, Allen JF, Tirichine L, Bowler C.

J Exp Bot. 2012 Feb;63(4):1543-57. doi: 10.1093/jxb/err441. Epub 2012 Jan 20. Review.

PMID:
22268145
20.

Cytokinin induction of root nodule primordia in Lotus japonicus is regulated by a mechanism operating in the root cortex.

Heckmann AB, Sandal N, Bek AS, Madsen LH, Jurkiewicz A, Nielsen MW, Tirichine L, Stougaard J.

Mol Plant Microbe Interact. 2011 Nov;24(11):1385-95. doi: 10.1094/MPMI-05-11-0142.

21.

Decoding algal genomes: tracing back the history of photosynthetic life on Earth.

Tirichine L, Bowler C.

Plant J. 2011 Apr;66(1):45-57. doi: 10.1111/j.1365-313X.2011.04540.x. Review.

22.

The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus.

Madsen LH, Tirichine L, Jurkiewicz A, Sullivan JT, Heckmann AB, Bek AS, Ronson CW, James EK, Stougaard J.

Nat Commun. 2010 Apr 12;1:10. doi: 10.1038/ncomms1009.

23.

Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei.

Andrey P, Kiêu K, Kress C, Lehmann G, Tirichine L, Liu Z, Biot E, Adenot PG, Hue-Beauvais C, Houba-Hérin N, Duranthon V, Devinoy E, Beaujean N, Gaudin V, Maurin Y, Debey P.

PLoS Comput Biol. 2010 Jul 8;6(7):e1000853. doi: 10.1371/journal.pcbi.1000853.

24.

MERE1, a low-copy-number copia-type retroelement in Medicago truncatula active during tissue culture.

Rakocevic A, Mondy S, Tirichine L, Cosson V, Brocard L, Iantcheva A, Cayrel A, Devier B, Abu El-Heba GA, Ratet P.

Plant Physiol. 2009 Nov;151(3):1250-63. doi: 10.1104/pp.109.138024. Epub 2009 Aug 5.

25.

3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei.

Tirichine L, Andrey P, Biot E, Maurin Y, Gaudin V.

Plant Methods. 2009 Aug 3;5:11. doi: 10.1186/1746-4811-5-11.

26.

A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis.

Tirichine L, Sandal N, Madsen LH, Radutoiu S, Albrektsen AS, Sato S, Asamizu E, Tabata S, Stougaard J.

Science. 2007 Jan 5;315(5808):104-7. Epub 2006 Nov 16.

27.

Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development.

Tirichine L, Imaizumi-Anraku H, Yoshida S, Murakami Y, Madsen LH, Miwa H, Nakagawa T, Sandal N, Albrektsen AS, Kawaguchi M, Downie A, Sato S, Tabata S, Kouchi H, Parniske M, Kawasaki S, Stougaard J.

Nature. 2006 Jun 29;441(7097):1153-6.

PMID:
16810257
28.

Spontaneous root-nodule formation in the model legume Lotus japonicus: a novel class of mutants nodulates in the absence of rhizobia.

Tirichine L, James EK, Sandal N, Stougaard J.

Mol Plant Microbe Interact. 2006 Apr;19(4):373-82.

29.

Mtsym6, a gene conditioning Sinorhizobium strain-specific nitrogen fixation in Medicago truncatula.

Tirichine L, de Billy F, Huguet T.

Plant Physiol. 2000 Jul;123(3):845-51.

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