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Items: 20

1.

Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry.

Searle BC, Pino LK, Egertson JD, Ting YS, Lawrence RT, MacLean BX, Villén J, MacCoss MJ.

Nat Commun. 2018 Dec 3;9(1):5128. doi: 10.1038/s41467-018-07454-w.

2.

Adenine derivatives invert high glucose-induced thioredoxin-interacting protein overexpression.

Zhong L, Liu Q, Ting YS, Thien VY, Binti Kalong NS, Yang D, Wang MW.

Chem Biol Drug Des. 2018 Dec;92(6):1998-2008. doi: 10.1111/cbdd.13371. Epub 2018 Sep 11.

PMID:
30043441
3.

MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides.

Timmins-Schiffman E, Mikan MP, Ting YS, Harvey HR, Nunn BL.

Sci Rep. 2018 Jun 18;8(1):9276. doi: 10.1038/s41598-018-27650-4.

4.

CD200 is a useful diagnostic marker for identifying atypical chronic lymphocytic leukemia by flow cytometry.

Ting YS, Smith SABC, Brown DA, Dodds AJ, Fay KC, Ma DDF, Milliken S, Moore JJ, Sewell WA.

Int J Lab Hematol. 2018 May 27. doi: 10.1111/ijlh.12857. [Epub ahead of print]

PMID:
29806244
5.

The Role of Mass Spectrometry and Proteogenomics in the Advancement of HLA Epitope Prediction.

Creech AL, Ting YS, Goulding SP, Sauld JFK, Barthelme D, Rooney MS, Addona TA, Abelin JG.

Proteomics. 2018 Jun;18(12):e1700259. doi: 10.1002/pmic.201700259. Epub 2018 Feb 23. Review.

6.

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses.

Rosenberger G, Bludau I, Schmitt U, Heusel M, Hunter CL, Liu Y, MacCoss MJ, MacLean BX, Nesvizhskii AI, Pedrioli PGA, Reiter L, Röst HL, Tate S, Ting YS, Collins BC, Aebersold R.

Nat Methods. 2017 Sep;14(9):921-927. doi: 10.1038/nmeth.4398. Epub 2017 Aug 21.

7.

PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data.

Ting YS, Egertson JD, Bollinger JG, Searle BC, Payne SH, Noble WS, MacCoss MJ.

Nat Methods. 2017 Sep;14(9):903-908. doi: 10.1038/nmeth.4390. Epub 2017 Aug 7.

8.

Proteomic analyses of nucleus laminaris identified candidate targets of the fragile X mental retardation protein.

Sakano H, Zorio DAR, Wang X, Ting YS, Noble WS, MacCoss MJ, Rubel EW, Wang Y.

J Comp Neurol. 2017 Oct 15;525(15):3341-3359. doi: 10.1002/cne.24281. Epub 2017 Jul 24.

9.

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data.

Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold R, Smith RD, Noble WS, MacCoss MJ.

Mol Cell Proteomics. 2015 Sep;14(9):2301-7. doi: 10.1074/mcp.O114.047035. Epub 2015 Jul 27.

10.

Multiplexed MS/MS for improved data-independent acquisition.

Egertson JD, Kuehn A, Merrihew GE, Bateman NW, MacLean BX, Ting YS, Canterbury JD, Marsh DM, Kellmann M, Zabrouskov V, Wu CC, MacCoss MJ.

Nat Methods. 2013 Aug;10(8):744-6. doi: 10.1038/nmeth.2528. Epub 2013 Jun 23.

11.

Analysis of protein-protein interactions in cross-talk pathways reveals CRKL protein as a novel prognostic marker in hepatocellular carcinoma.

Liu CH, Chen TC, Chau GY, Jan YH, Chen CH, Hsu CN, Lin KT, Juang YL, Lu PJ, Cheng HC, Chen MH, Chang CF, Ting YS, Kao CY, Hsiao M, Huang CY.

Mol Cell Proteomics. 2013 May;12(5):1335-49. doi: 10.1074/mcp.O112.020404. Epub 2013 Feb 8.

12.

Surface acoustic wave nebulization facilitating lipid mass spectrometric analysis.

Yoon SH, Huang Y, Edgar JS, Ting YS, Heron SR, Kao Y, Li Y, Masselon CD, Ernst RK, Goodlett DR.

Anal Chem. 2012 Aug 7;84(15):6530-7. doi: 10.1021/ac300807p. Epub 2012 Jul 12.

13.

Protein identification using top-down.

Liu X, Sirotkin Y, Shen Y, Anderson G, Tsai YS, Ting YS, Goodlett DR, Smith RD, Bafna V, Pevzner PA.

Mol Cell Proteomics. 2012 Jun;11(6):M111.008524. doi: 10.1074/mcp.M111.008524. Epub 2011 Oct 25.

14.

Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses.

Chu LJ, Yang H, Shih P, Kao Y, Tsai YS, Chen J, Huang G, Weng RR, Ting YS, Fang X, von Haller PD, Goodlett DR, Ng WV.

J Proteome Res. 2011 Jul 1;10(7):3261-73. doi: 10.1021/pr200290x. Epub 2011 Jun 14.

15.

Automated lipid A structure assignment from hierarchical tandem mass spectrometry data.

Ting YS, Shaffer SA, Jones JW, Ng WV, Ernst RK, Goodlett DR.

J Am Soc Mass Spectrom. 2011 May;22(5):856-66. doi: 10.1007/s13361-010-0055-y. Epub 2011 Mar 5.

PMID:
21472520
16.

New structural proteins of Halobacterium salinarum gas vesicle revealed by comparative proteomics analysis.

Chu LJ, Chen MC, Setter J, Tsai YS, Yang H, Fang X, Ting YS, Shaffer SA, Taylor GK, von Haller PD, Goodlett DR, Ng WV.

J Proteome Res. 2011 Mar 4;10(3):1170-8. doi: 10.1021/pr1009383. Epub 2011 Jan 25.

PMID:
21158390
17.

GMP-compliant automated synthesis of [(18)F]AV-45 (Florbetapir F 18) for imaging beta-amyloid plaques in human brain.

Yao CH, Lin KJ, Weng CC, Hsiao IT, Ting YS, Yen TC, Jan TR, Skovronsky D, Kung MP, Wey SP.

Appl Radiat Isot. 2010 Dec;68(12):2293-7. doi: 10.1016/j.apradiso.2010.07.001. Epub 2010 Jul 7.

PMID:
20638295
18.

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction.

Morris RM, Nunn BL, Frazar C, Goodlett DR, Ting YS, Rocap G.

ISME J. 2010 May;4(5):673-85. doi: 10.1038/ismej.2010.4. Epub 2010 Feb 18.

PMID:
20164862
19.

Effects of payoff functions and preference distributions in an adaptive population.

Yang HM, Ting YS, Wong KY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Mar;77(3 Pt 1):031116. Epub 2008 Mar 13.

PMID:
18517338
20.

Voltammetric determination of caffeine in beverages using a chemically modified electrode.

Zen JM, Ting YS, Shih Y.

Analyst. 1998 May;123(5):1145-7.

PMID:
9709497

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