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Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID.

Mair A, Xu SL, Branon TC, Ting AY, Bergmann DC.

Elife. 2019 Sep 19;8. pii: e47864. doi: 10.7554/eLife.47864.


Correction: Proteomic mapping of cytosol-facing outer mitochondrial and ER membranes in living human cells by proximity biotinylation.

Hung V, Lam SS, Udeshi ND, Svinkina T, Guzman G, Mootha VK, Carr SA, Ting AY.

Elife. 2019 Aug 5;8. pii: e50707. doi: 10.7554/eLife.50707.


TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity.

Zhang Y, Song G, Lal NK, Nagalakshmi U, Li Y, Zheng W, Huang PJ, Branon TC, Ting AY, Walley JW, Dinesh-Kumar SP.

Nat Commun. 2019 Jul 19;10(1):3252. doi: 10.1038/s41467-019-11202-z.


Atlas of Subcellular RNA Localization Revealed by APEX-Seq.

Fazal FM, Han S, Parker KR, Kaewsapsak P, Xu J, Boettiger AN, Chang HY, Ting AY.

Cell. 2019 Jul 11;178(2):473-490.e26. doi: 10.1016/j.cell.2019.05.027. Epub 2019 Jun 20.


Luciferase-LOV BRET enables versatile and specific transcriptional readout of cellular protein-protein interactions.

Kim CK, Cho KF, Kim MW, Ting AY.

Elife. 2019 Apr 3;8. pii: e43826. doi: 10.7554/eLife.43826.


Molecular tools for imaging and recording neuronal activity.

Wang W, Kim CK, Ting AY.

Nat Chem Biol. 2019 Feb;15(2):101-110. doi: 10.1038/s41589-018-0207-0. Epub 2019 Jan 18. Review.


Single nucleotide polymorphisms alter kinase anchoring and the subcellular targeting of A-kinase anchoring proteins.

Smith FD, Omar MH, Nygren PJ, Soughayer J, Hoshi N, Lau HT, Snyder CG, Branon TC, Ghosh D, Langeberg LK, Ting AY, Santana LF, Ong SE, Navedo MF, Scott JD.

Proc Natl Acad Sci U S A. 2018 Dec 4;115(49):E11465-E11474. doi: 10.1073/pnas.1816614115. Epub 2018 Nov 19.


Treatment of female rhesus macaques with a somatostatin receptor antagonist that increases oocyte fertilization rates without affecting post-fertilization development outcomes.

Ting AY, Murphy MJ, Arriagada P, Gotteland JP, Hennebold JD.

J Assist Reprod Genet. 2019 Feb;36(2):229-239. doi: 10.1007/s10815-018-1369-0. Epub 2018 Nov 15.


Associations of paternal postpartum depressive symptoms and infant development in a Chinese longitudinal study.

Ip P, Li TMH, Chan KL, Ting AYY, Chan CY, Koh YW, Ho FKW, Lee A.

Infant Behav Dev. 2018 Nov;53:81-89. doi: 10.1016/j.infbeh.2018.08.002. Epub 2018 Sep 10.


Microforceps-assisted diagnosis of a cystic GI stromal tumor lesion.

Sanders D, Ting AYS, Schaeffer DF, Donnellan F.

VideoGIE. 2018 Jul 3;3(9):268-269. doi: 10.1016/j.vgie.2018.06.001. eCollection 2018 Sep. No abstract available.


Efficient proximity labeling in living cells and organisms with TurboID.

Branon TC, Bosch JA, Sanchez AD, Udeshi ND, Svinkina T, Carr SA, Feldman JL, Perrimon N, Ting AY.

Nat Biotechnol. 2018 Oct;36(9):880-887. doi: 10.1038/nbt.4201. Epub 2018 Aug 20.


Anti-Müllerian hormone is a survival factor and promotes the growth of rhesus macaque preantral follicles during matrix-free culture.

Xu J, Xu F, Lawson MS, Tkachenko OY, Ting AY, Kahl CA, Park BS, Stouffer RR, Bishop CV.

Biol Reprod. 2018 Feb 1;98(2):197-207. doi: 10.1093/biolre/iox181.


Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.

Kaewsapsak P, Shechner DM, Mallard W, Rinn JL, Ting AY.

Elife. 2017 Dec 14;6. pii: e29224. doi: 10.7554/eLife.29224.


Time-gated detection of protein-protein interactions with transcriptional readout.

Kim MW, Wang W, Sanchez MI, Coukos R, von Zastrow M, Ting AY.

Elife. 2017 Nov 30;6. pii: e30233. doi: 10.7554/eLife.30233.


Proximity labeling: spatially resolved proteomic mapping for neurobiology.

Han S, Li J, Ting AY.

Curr Opin Neurobiol. 2018 Jun;50:17-23. doi: 10.1016/j.conb.2017.10.015. Epub 2017 Nov 8. Review.


Direct actions of androgen, estrogen and anti-Müllerian hormone on primate secondary follicle development in the absence of FSH in vitro.

Baba T, Ting AY, Tkachenko O, Xu J, Stouffer RL.

Hum Reprod. 2017 Dec 1;32(12):2456-2464. doi: 10.1093/humrep/dex322.


Antibodies to biotin enable large-scale detection of biotinylation sites on proteins.

Udeshi ND, Pedram K, Svinkina T, Fereshetian S, Myers SA, Aygun O, Krug K, Clauser K, Ryan D, Ast T, Mootha VK, Ting AY, Carr SA.

Nat Methods. 2017 Dec;14(12):1167-1170. doi: 10.1038/nmeth.4465. Epub 2017 Oct 16.


RNA targeting with CRISPR-Cas13.

Abudayyeh OO, Gootenberg JS, Essletzbichler P, Han S, Joung J, Belanto JJ, Verdine V, Cox DBT, Kellner MJ, Regev A, Lander ES, Voytas DF, Ting AY, Zhang F.

Nature. 2017 Oct 12;550(7675):280-284. doi: 10.1038/nature24049. Epub 2017 Oct 4.


Development of macaque secondary follicles exposed to neutral red prior to 3-dimensional culture.

Bulgarelli DL, Ting AY, Gordon BJ, de Sá Rosa-E-Silva ACJ, Zelinski MB.

J Assist Reprod Genet. 2018 Jan;35(1):71-79. doi: 10.1007/s10815-017-1043-y. Epub 2017 Sep 21.


The Dopamine Transporter Recycles via a Retromer-Dependent Postendocytic Mechanism: Tracking Studies Using a Novel Fluorophore-Coupling Approach.

Wu S, Fagan RR, Uttamapinant C, Lifshitz LM, Fogarty KE, Ting AY, Melikian HE.

J Neurosci. 2017 Sep 27;37(39):9438-9452. doi: 10.1523/JNEUROSCI.3885-16.2017. Epub 2017 Aug 28.


Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells.

Martell JD, Deerinck TJ, Lam SS, Ellisman MH, Ting AY.

Nat Protoc. 2017 Sep;12(9):1792-1816. doi: 10.1038/nprot.2017.065. Epub 2017 Aug 10.


A light- and calcium-gated transcription factor for imaging and manipulating activated neurons.

Wang W, Wildes CP, Pattarabanjird T, Sanchez MI, Glober GF, Matthews GA, Tye KM, Ting AY.

Nat Biotechnol. 2017 Sep;35(9):864-871. doi: 10.1038/nbt.3909. Epub 2017 Jun 26.


Characterization of FOXO1, 3 and 4 transcription factors in ovaries of fetal, prepubertal and adult rhesus macaques.

Ting AY, Zelinski MB.

Biol Reprod. 2017 May 1;96(5):1052-1059. doi: 10.1093/biolre/iox034.


Proteomic mapping of cytosol-facing outer mitochondrial and ER membranes in living human cells by proximity biotinylation.

Hung V, Lam SS, Udeshi ND, Svinkina T, Guzman G, Mootha VK, Carr SA, Ting AY.

Elife. 2017 Apr 25;6. pii: e24463. doi: 10.7554/eLife.24463. Erratum in: Elife. 2019 Aug 05;8:.


An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells.

Lobingier BT, Hüttenhain R, Eichel K, Miller KB, Ting AY, von Zastrow M, Krogan NJ.

Cell. 2017 Apr 6;169(2):350-360.e12. doi: 10.1016/j.cell.2017.03.022.


Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells.

Han S, Udeshi ND, Deerinck TJ, Svinkina T, Ellisman MH, Carr SA, Ting AY.

Cell Chem Biol. 2017 Mar 16;24(3):404-414. doi: 10.1016/j.chembiol.2017.02.002. Epub 2017 Feb 23.


In Situ Peroxidase Labeling and Mass-Spectrometry Connects Alpha-Synuclein Directly to Endocytic Trafficking and mRNA Metabolism in Neurons.

Chung CY, Khurana V, Yi S, Sahni N, Loh KH, Auluck PK, Baru V, Udeshi ND, Freyzon Y, Carr SA, Hill DE, Vidal M, Ting AY, Lindquist S.

Cell Syst. 2017 Feb 22;4(2):242-250.e4. doi: 10.1016/j.cels.2017.01.002. Epub 2017 Jan 25.


Good manufacturing practice requirements for the production of tissue vitrification and warming and recovery kits for clinical research.

Laronda MM, McKinnon KE, Ting AY, Le Fever AV, Zelinski MB, Woodruff TK.

J Assist Reprod Genet. 2017 Feb;34(2):291-300. doi: 10.1007/s10815-016-0846-6. Epub 2016 Nov 30.


Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts.

Loh KH, Stawski PS, Draycott AS, Udeshi ND, Lehrman EK, Wilton DK, Svinkina T, Deerinck TJ, Ellisman MH, Stevens B, Carr SA, Ting AY.

Cell. 2016 Aug 25;166(5):1295-1307.e21. doi: 10.1016/j.cell.2016.07.041.


Letter: oral low-dose methotrexate for collagenous colitis.

Kia YH, Ting AY, Dowling D.

Aliment Pharmacol Ther. 2016 Jul;44(1):97. doi: 10.1111/apt.13638. No abstract available.


A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses.

Martell JD, Yamagata M, Deerinck TJ, Phan S, Kwa CG, Ellisman MH, Sanes JR, Ting AY.

Nat Biotechnol. 2016 Jul;34(7):774-80. doi: 10.1038/nbt.3563. Epub 2016 May 30.


APEX Fingerprinting Reveals the Subcellular Localization of Proteins of Interest.

Lee SY, Kang MG, Park JS, Lee G, Ting AY, Rhee HW.

Cell Rep. 2016 May 24;15(8):1837-47. doi: 10.1016/j.celrep.2016.04.064. Epub 2016 May 12.


Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2.

Hung V, Udeshi ND, Lam SS, Loh KH, Cox KJ, Pedram K, Carr SA, Ting AY.

Nat Protoc. 2016 Mar;11(3):456-75. doi: 10.1038/nprot.2016.018. Epub 2016 Feb 11.


Western-style diet, with and without chronic androgen treatment, alters the number, structure, and function of small antral follicles in ovaries of young adult monkeys.

Bishop CV, Xu F, Xu J, Ting AY, Galbreath E, McGee WK, Zelinski MB, Hennebold JD, Cameron JL, Stouffer RL.

Fertil Steril. 2016 Apr;105(4):1023-34. doi: 10.1016/j.fertnstert.2015.11.045. Epub 2015 Dec 21.


Proteomic mapping in live Drosophila tissues using an engineered ascorbate peroxidase.

Chen CL, Hu Y, Udeshi ND, Lau TY, Wirtz-Peitz F, He L, Ting AY, Carr SA, Perrimon N.

Proc Natl Acad Sci U S A. 2015 Sep 29;112(39):12093-8. doi: 10.1073/pnas.1515623112. Epub 2015 Sep 11.


A Mechanical Switch Couples T Cell Receptor Triggering to the Cytoplasmic Juxtamembrane Regions of CD3ζζ.

Lee MS, Glassman CR, Deshpande NR, Badgandi HB, Parrish HL, Uttamapinant C, Stawski PS, Ting AY, Kuhns MS.

Immunity. 2015 Aug 18;43(2):227-39. doi: 10.1016/j.immuni.2015.06.018. Epub 2015 Jul 28.


Differential effects of estrogen and progesterone on development of primate secondary follicles in a steroid-depleted milieu in vitro.

Ting AY, Xu J, Stouffer RL.

Hum Reprod. 2015 Aug;30(8):1907-17. doi: 10.1093/humrep/dev119. Epub 2015 Jun 3.


Expression of the beta-2 adrenergic receptor (ADRB-2) in human and monkey ovarian follicles: a marker of growing follicles?

Merz C, Saller S, Kunz L, Xu J, Yeoman RR, Ting AY, Lawson MS, Stouffer RL, Hennebold JD, Pau F, Dissen GA, Ojeda SR, Zelinski MB, Mayerhofer A.

J Ovarian Res. 2015 Mar 7;8:8. doi: 10.1186/s13048-015-0136-4.


Challenges and Potential for Ovarian Preservation with SERMs.

Ting AY, Petroff BK.

Biol Reprod. 2015 May;92(5):133. doi: 10.1095/biolreprod.115.128207. Epub 2015 Mar 25. Review.


Hepatitis C virus treatment in the 'real-world': how well do 'real' patients respond?

Deborah Friedman N, Green JH, Weber HM, Stephen S, Lane SE, Ting AY, Watson JP.

J Clin Exp Hepatol. 2014 Sep;4(3):214-20. doi: 10.1016/j.jceh.2014.07.003. Epub 2014 Jul 25.


Directed evolution of APEX2 for electron microscopy and proximity labeling.

Lam SS, Martell JD, Kamer KJ, Deerinck TJ, Ellisman MH, Mootha VK, Ting AY.

Nat Methods. 2015 Jan;12(1):51-4. doi: 10.1038/nmeth.3179. Epub 2014 Nov 24.


Computational design of a red fluorophore ligase for site-specific protein labeling in living cells.

Liu DS, Nivón LG, Richter F, Goldman PJ, Deerinck TJ, Yao JZ, Richardson D, Phipps WS, Ye AZ, Ellisman MH, Drennan CL, Baker D, Ting AY.

Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):E4551-9. doi: 10.1073/pnas.1404736111. Epub 2014 Oct 13.


Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging.

Hung V, Zou P, Rhee HW, Udeshi ND, Cracan V, Svinkina T, Carr SA, Mootha VK, Ting AY.

Mol Cell. 2014 Jul 17;55(2):332-41. doi: 10.1016/j.molcel.2014.06.003. Epub 2014 Jul 4.


Antibiotics induce redox-related physiological alterations as part of their lethality.

Dwyer DJ, Belenky PA, Yang JH, MacDonald IC, Martell JD, Takahashi N, Chan CT, Lobritz MA, Braff D, Schwarz EG, Ye JD, Pati M, Vercruysse M, Ralifo PS, Allison KR, Khalil AS, Ting AY, Walker GC, Collins JJ.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):E2100-9. doi: 10.1073/pnas.1401876111. Epub 2014 May 6.


Retrieval of a bread bag clip from the duodenum.

Ding NS, Ting AY, Loh D, Leong M, Hair C.

Endoscopy. 2013;45 Suppl 2 UCTN:E309-10. doi: 10.1055/s-0032-1325975. Epub 2013 Sep 5. No abstract available.


Site-specific protein labeling using PRIME and chelation-assisted click chemistry.

Uttamapinant C, Sanchez MI, Liu DS, Yao JZ, Ting AY.

Nat Protoc. 2013 Aug;8(8):1620-34. doi: 10.1038/nprot.2013.096. Epub 2013 Jul 25.


Fibrin promotes development and function of macaque primary follicles during encapsulated three-dimensional culture.

Xu J, Lawson MS, Yeoman RR, Molskness TA, Ting AY, Stouffer RL, Zelinski MB.

Hum Reprod. 2013 Aug;28(8):2187-200. doi: 10.1093/humrep/det093. Epub 2013 Apr 21.


Imaging trans-cellular neurexin-neuroligin interactions by enzymatic probe ligation.

Liu DS, Loh KH, Lam SS, White KA, Ting AY.

PLoS One. 2013;8(2):e52823. doi: 10.1371/journal.pone.0052823. Epub 2013 Feb 14.


Morphological and functional preservation of pre-antral follicles after vitrification of macaque ovarian tissue in a closed system.

Ting AY, Yeoman RR, Campos JR, Lawson MS, Mullen SF, Fahy GM, Zelinski MB.

Hum Reprod. 2013 May;28(5):1267-79. doi: 10.1093/humrep/det032. Epub 2013 Feb 20.


IDOL stimulates clathrin-independent endocytosis and multivesicular body-mediated lysosomal degradation of the low-density lipoprotein receptor.

Scotti E, Calamai M, Goulbourne CN, Zhang L, Hong C, Lin RR, Choi J, Pilch PF, Fong LG, Zou P, Ting AY, Pavone FS, Young SG, Tontonoz P.

Mol Cell Biol. 2013 Apr;33(8):1503-14. doi: 10.1128/MCB.01716-12. Epub 2013 Feb 4.

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