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Repository-based plasmid design.

Timmons JJ, Densmore D.

PLoS One. 2020 Jan 9;15(1):e0223935. doi: 10.1371/journal.pone.0223935. eCollection 2020.


Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells.

Cao H, Salazar-García L, Gao F, Wahlestedt T, Wu CL, Han X, Cai Y, Xu D, Wang F, Tang L, Ricciardi N, Cai D, Wang H, Chin MPS, Timmons JA, Wahlestedt C, Kapranov P.

Nat Commun. 2019 Dec 20;10(1):5799. doi: 10.1038/s41467-019-13602-7.


Exercise Maintenance in Older Adults 1 Year After Completion of a Supervised Training Intervention.

Timmons JF, Griffin C, Cogan KE, Matthews J, Egan B.

J Am Geriatr Soc. 2020 Jan;68(1):163-169. doi: 10.1111/jgs.16209. Epub 2019 Oct 24.


A statistical and biological response to an informatics appraisal of healthy aging gene signatures.

Timmons JA, Gallagher IJ, Sood S, Phillips B, Crossland H, Howard R, Kraus WE, Atherton PJ.

Genome Biol. 2019 Aug 2;20(1):152. doi: 10.1186/s13059-019-1734-z.


Longevity-related molecular pathways are subject to midlife "switch" in humans.

Timmons JA, Volmar CH, Crossland H, Phillips BE, Sood S, Janczura KJ, Törmäkangas T, Kujala UM, Kraus WE, Atherton PJ, Wahlestedt C.

Aging Cell. 2019 Aug;18(4):e12970. doi: 10.1111/acel.12970. Epub 2019 Jun 6.


Effect of manganese preconditioning and replacing inorganic manganese with organic manganese on performance of male broiler chicks.

Mwangi S, Timmons J, Ao T, Paul M, Macalintal L, Pescatore A, Cantor A, Dawson KA.

Poult Sci. 2019 May 1;98(5):2105-2113. doi: 10.3382/ps/pey564.


Epidemiology of Hyperbilirubinemia in a Quaternary Pediatric Emergency Department over a Three-Year Period.

Timmons Z, Timmons J, Conrad C, Miloh T.

Pediatr Gastroenterol Hepatol Nutr. 2018 Oct;21(4):297-305. doi: 10.5223/pghn.2018.21.4.297. Epub 2018 Oct 10.


Tubulin's response to external electric fields by molecular dynamics simulations.

Timmons JJ, Preto J, Tuszynski JA, Wong ET.

PLoS One. 2018 Sep 19;13(9):e0202141. doi: 10.1371/journal.pone.0202141. eCollection 2018.


Characterization of Clostridium perfringens recovered from broiler chicken affected by necrotic enteritis.

Mwangi S, Timmons J, Fitz-Coy S, Parveen S.

Poult Sci. 2019 Jan 1;98(1):128-135. doi: 10.3382/ps/pey332.


Anomalous variations in the viscous activation energy of suspensions induced by fractal structuring.

Timmons J, Falzone G, Balonis M, Bauchy M, Sant G.

J Colloid Interface Sci. 2018 Nov 15;530:603-609. doi: 10.1016/j.jcis.2018.07.008. Epub 2018 Jul 4.


The Role of the Physician When a Patient Discloses Intimate Partner Violence Perpetration: A Literature Review.

Penti B, Timmons J, Adams D.

J Am Board Fam Med. 2018 Jul-Aug;31(4):635-644. doi: 10.3122/jabfm.2018.04.170440. Review.


A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease.

Timmons JA, Atherton PJ, Larsson O, Sood S, Blokhin IO, Brogan RJ, Volmar CH, Josse AR, Slentz C, Wahlestedt C, Phillips SM, Phillips BE, Gallagher IJ, Kraus WE.

Nucleic Acids Res. 2018 Sep 6;46(15):7772-7792. doi: 10.1093/nar/gky570.


Comparison of time-matched aerobic, resistance, or concurrent exercise training in older adults.

Timmons JF, Minnock D, Hone M, Cogan KE, Murphy JC, Egan B.

Scand J Med Sci Sports. 2018 Nov;28(11):2272-2283. doi: 10.1111/sms.13254. Epub 2018 Jul 16.


Early Intravascular Events Are Associated with Development of Acute Respiratory Distress Syndrome. A Substudy of the LIPS-A Clinical Trial.

Abdulnour RE, Gunderson T, Barkas I, Timmons JY, Barnig C, Gong M, Kor DJ, Gajic O, Talmor D, Carter RE, Levy BD.

Am J Respir Crit Care Med. 2018 Jun 15;197(12):1575-1585. doi: 10.1164/rccm.201712-2530OC.


Literature Review of Spinal Cord Glioblastoma.

Timmons JJ, Zhang K, Fong J, Lok E, Swanson KD, Gautam S, Wong ET.

Am J Clin Oncol. 2018 Dec;41(12):1281-1287. doi: 10.1097/COC.0000000000000434. Review.


Automated Robotic Liquid Handling Assembly of Modular DNA Devices.

Ortiz L, Pavan M, McCarthy L, Timmons J, Densmore DM.

J Vis Exp. 2017 Dec 1;(130). doi: 10.3791/54703.


End-to-end workflow for finite element analysis of tumor treating fields in glioblastomas.

Timmons JJ, Lok E, San P, Bui K, Wong ET.

Phys Med Biol. 2017 Oct 12;62(21):8264-8282. doi: 10.1088/1361-6560/aa87f3.


A Practical and Time-Efficient High-Intensity Interval Training Program Modifies Cardio-Metabolic Risk Factors in Adults with Risk Factors for Type II Diabetes.

Phillips BE, Kelly BM, Lilja M, Ponce-González JG, Brogan RJ, Morris DL, Gustafsson T, Kraus WE, Atherton PJ, Vollaard NBJ, Rooyackers O, Timmons JA.

Front Endocrinol (Lausanne). 2017 Sep 8;8:229. doi: 10.3389/fendo.2017.00229. eCollection 2017.


A dynamic ribosomal biogenesis response is not required for IGF-1-mediated hypertrophy of human primary myotubes.

Crossland H, Timmons JA, Atherton PJ.

FASEB J. 2017 Dec;31(12):5196-5207. doi: 10.1096/fj.201700329R. Epub 2017 Aug 3.


Hypoglycemia and Clinical Outcomes in Hospitalized Patients With Diabetes: Does Association With Adverse Outcomes Remain When Number of Glucose Tests Performed Is Accounted For?

Jones GC, Timmons JG, Cunningham SG, Cleland SJ, Sainsbury CAR.

J Diabetes Sci Technol. 2017 Jul;11(4):720-723. doi: 10.1177/1932296816688012. Epub 2017 Jan 9.


Effects of physical activity on the link between PGC-1a and FNDC5 in muscle, circulating Ιrisin and UCP1 of white adipocytes in humans: A systematic review.

Dinas PC, Lahart IM, Timmons JA, Svensson PA, Koutedakis Y, Flouris AD, Metsios GS.

Version 2. F1000Res. 2017 Mar 17 [revised 2017 Jan 1];6:286. doi: 10.12688/f1000research.11107.2. eCollection 2017.


Physicians' Experiences with Male Patients Who Perpetrate Intimate Partner Violence.

Penti B, Tran H, Timmons J, Rothman EF, Wilkinson J.

J Am Board Fam Med. 2017 Mar-Apr;30(2):239-247. doi: 10.3122/jabfm.2017.02.160258.


Cabozantinib Eradicates Advanced Murine Prostate Cancer by Activating Antitumor Innate Immunity.

Patnaik A, Swanson KD, Csizmadia E, Solanki A, Landon-Brace N, Gehring MP, Helenius K, Olson BM, Pyzer AR, Wang LC, Elemento O, Novak J, Thornley TB, Asara JM, Montaser L, Timmons JJ, Morgan TM, Wang Y, Levantini E, Clohessy JG, Kelly K, Pandolfi PP, Rosenblatt JM, Avigan DE, Ye H, Karp JM, Signoretti S, Balk SP, Cantley LC.

Cancer Discov. 2017 Jul;7(7):750-765. doi: 10.1158/2159-8290.CD-16-0778. Epub 2017 Mar 8.


Limb proportions show developmental plasticity in response to embryo movement.

Pollard AS, Charlton BG, Hutchinson JR, Gustafsson T, McGonnell IM, Timmons JA, Pitsillides AA.

Sci Rep. 2017 Feb 6;7:41926. doi: 10.1038/srep41926.


Molecular Diagnostics of Ageing and Tackling Age-related Disease.

Timmons JA.

Trends Pharmacol Sci. 2017 Jan;38(1):67-80. doi: 10.1016/ Epub 2016 Dec 12. Review.


Phase I study of low-dose metronomic temozolomide for recurrent malignant gliomas.

Wong ET, Timmons J, Callahan A, O'Loughlin L, Giarusso B, Alsop DC.

BMC Cancer. 2016 Nov 22;16(1):914.


A reverse genetics cell-based evaluation of genes linked to healthy human tissue age.

Crossland H, Atherton PJ, Strömberg A, Gustafsson T, Timmons JA.

FASEB J. 2017 Jan;31(1):96-108. doi: 10.1096/fj.201600296RRR. Epub 2016 Oct 3.


Effect of zinc imprinting and replacing inorganic zinc with organic zinc on early performance of broiler chicks.

Mwangi S, Timmons J, Ao T, Paul M, Macalintal L, Pescatore A, Cantor A, Ford M, Dawson KA.

Poult Sci. 2017 Apr 1;96(4):861-868. doi: 10.3382/ps/pew312.


Biomarkers of browning of white adipose tissue and their regulation during exercise- and diet-induced weight loss.

Nakhuda A, Josse AR, Gburcik V, Crossland H, Raymond F, Metairon S, Good L, Atherton PJ, Phillips SM, Timmons JA.

Am J Clin Nutr. 2016 Sep;104(3):557-65. doi: 10.3945/ajcn.116.132563. Epub 2016 Aug 3.


Inpatient Glycemic Variability and Long-Term Mortality in Hospitalized Patients with Type 2 Diabetes.

Timmons JG, Cunningham SG, Sainsbury CA, Jones GC.

J Diabetes Complications. 2017 Feb;31(2):479-482. doi: 10.1016/j.jdiacomp.2016.06.013. Epub 2016 Jun 14.


Molecular studies of exercise, skeletal muscle, and ageing.

Timmons JA, Gallagher IJ.

F1000Res. 2016 Jun 2;5. pii: F1000 Faculty Rev-1087. doi: 10.12688/f1000research.8255.1. eCollection 2016. Review.


Injection of Syngeneic Murine Melanoma Cells to Determine Their Metastatic Potential in the Lungs.

Timmons JJ, Cohessy S, Wong ET.

J Vis Exp. 2016 May 24;(111). doi: 10.3791/54039.


Expression of protocadherin gamma in skeletal muscle tissue is associated with age and muscle weakness.

Hangelbroek RW, Fazelzadeh P, Tieland M, Boekschoten MV, Hooiveld GJ, van Duynhoven JP, Timmons JA, Verdijk LB, de Groot LC, van Loon LJ, Müller M.

J Cachexia Sarcopenia Muscle. 2016 Dec;7(5):604-614. Epub 2016 Feb 2.


iGEMS: an integrated model for identification of alternative exon usage events.

Sood S, Szkop KJ, Nakhuda A, Gallagher IJ, Murie C, Brogan RJ, Kaprio J, Kainulainen H, Atherton PJ, Kujala UM, Gustafsson T, Larsson O, Timmons JA.

Nucleic Acids Res. 2016 Jun 20;44(11):e109. doi: 10.1093/nar/gkw263. Epub 2016 Apr 19.


Multiple sources of bias confound functional enrichment analysis of global -omics data.

Timmons JA, Szkop KJ, Gallagher IJ.

Genome Biol. 2015 Sep 7;16:186. doi: 10.1186/s13059-015-0761-7.


A novel multi-tissue RNA diagnostic of healthy ageing relates to cognitive health status.

Sood S, Gallagher IJ, Lunnon K, Rullman E, Keohane A, Crossland H, Phillips BE, Cederholm T, Jensen T, van Loon LJ, Lannfelt L, Kraus WE, Atherton PJ, Howard R, Gustafsson T, Hodges A, Timmons JA.

Genome Biol. 2015 Sep 7;16:185. doi: 10.1186/s13059-015-0750-x.


Single-Gene Genotyping and Personalized Preventive Care.

Timmons JA.

JAMA. 2015 Jul 21;314(3):297-8. doi: 10.1001/jama.2015.6218. No abstract available.


Clinical, developmental and molecular update on Cornelia de Lange syndrome and the cohesin complex: abstracts from the 2014 Scientific and Educational Symposium.

Kline AD, Calof AL, Lander AD, Gerton JL, Krantz ID, Dorsett D, Deardorff MA, Blagowidow N, Yokomori K, Shirahige K, Santos R, Woodman J, Megee PC, O'Connor JT, Egense A, Noon S, Belote M, Goodban MT, Hansen BD, Timmons JG, Musio A, Ishman SL, Bryan Y, Wu Y, Bettini LR, Mehta D, Zakari M, Mills JA, Srivastava S, Haaland RE.

Am J Med Genet A. 2015 Jun;167(6):1179-92. doi: 10.1002/ajmg.a.37056. Epub 2015 Apr 21.


Vascular Anomalies Associated with Esophageal Atresia and Tracheoesophageal Fistula.

Berthet S, Tenisch E, Miron MC, Alami N, Timmons J, Aspirot A, Faure C.

J Pediatr. 2015 May;166(5):1140-1144.e2. doi: 10.1016/j.jpeds.2015.01.038. Epub 2015 Feb 24.


Maresin 1 biosynthesis during platelet-neutrophil interactions is organ-protective.

Abdulnour RE, Dalli J, Colby JK, Krishnamoorthy N, Timmons JY, Tan SH, Colas RA, Petasis NA, Serhan CN, Levy BD.

Proc Natl Acad Sci U S A. 2014 Nov 18;111(46):16526-31. doi: 10.1073/pnas.1407123111. Epub 2014 Nov 4.


Divergent effects of muscarinic receptor subtype gene ablation on murine colon tumorigenesis reveals association of M3R and zinc finger protein 277 expression in colon neoplasia.

Cheng K, Xie G, Khurana S, Heath J, Drachenberg CB, Timmons J, Shah N, Raufman JP.

Mol Cancer. 2014 Apr 3;13:77. doi: 10.1186/1476-4598-13-77.


Evaluation of Maryland backyard flocks and biosecurity practices.

Madsen JM, Zimmermann NG, Timmons J, Tablante NL.

Avian Dis. 2013 Jun;57(2):233-7.


Prevalence and differentiation of diseases in Maryland backyard flocks.

Madsen JM, Zimmermann NG, Timmons J, Tablante NL.

Avian Dis. 2013 Sep;57(3):587-94.



Alaish SM, Timmons J, Smith A, Buzza MS, Murphy E, Zhao A, Sun Y, Turner DJ, Shea-Donahue T, Antalis TM, Cross A, Dorsey SG.

Physiol Rep. 2013 Sep;1(4). doi: 10.1002/phy2.73.


Venous leg ulcer management: single use negative pressure wound therapy.

Dowsett C, Grothier L, Henderson V, Leak K, Milne J, Davis L, Bielby A, Timmons J.

Br J Community Nurs. 2013 Jun;Suppl:S6, S8-10, S12-5.


Integrative pathway analysis of a genome-wide association study of (V)O(2max) response to exercise training.

Ghosh S, Vivar JC, Sarzynski MA, Sung YJ, Timmons JA, Bouchard C, Rankinen T.

J Appl Physiol (1985). 2013 Nov 1;115(9):1343-59. doi: 10.1152/japplphysiol.01487.2012. Epub 2013 Aug 29.


Focal adhesion kinase is required for IGF-I-mediated growth of skeletal muscle cells via a TSC2/mTOR/S6K1-associated pathway.

Crossland H, Kazi AA, Lang CH, Timmons JA, Pierre P, Wilkinson DJ, Smith K, Szewczyk NJ, Atherton PJ.

Am J Physiol Endocrinol Metab. 2013 Jul 15;305(2):E183-93. doi: 10.1152/ajpendo.00541.2012. Epub 2013 May 21.


Gut microbiota, tight junction protein expression, intestinal resistance, bacterial translocation and mortality following cholestasis depend on the genetic background of the host.

Alaish SM, Smith AD, Timmons J, Greenspon J, Eyvazzadeh D, Murphy E, Shea-Donahue T, Cirimotich S, Mongodin E, Zhao A, Fasano A, Nataro JP, Cross A.

Gut Microbes. 2013 Jul-Aug;4(4):292-305. doi: 10.4161/gmic.24706. Epub 2013 Apr 15.


Resistance to aerobic exercise training causes metabolic dysfunction and reveals novel exercise-regulated signaling networks.

Lessard SJ, Rivas DA, Alves-Wagner AB, Hirshman MF, Gallagher IJ, Constantin-Teodosiu D, Atkins R, Greenhaff PL, Qi NR, Gustafsson T, Fielding RA, Timmons JA, Britton SL, Koch LG, Goodyear LJ.

Diabetes. 2013 Aug;62(8):2717-27. doi: 10.2337/db13-0062. Epub 2013 Apr 22.


Molecular networks of human muscle adaptation to exercise and age.

Phillips BE, Williams JP, Gustafsson T, Bouchard C, Rankinen T, Knudsen S, Smith K, Timmons JA, Atherton PJ.

PLoS Genet. 2013 Mar;9(3):e1003389. doi: 10.1371/journal.pgen.1003389. Epub 2013 Mar 21. Erratum in: PLoS Genet. 2013;9(4). doi: 10.1371/annotation/0dd3671e-1460-48fa-9d6a-2865dce78c07.

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