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Items: 1 to 50 of 353

1.

Scientists' warning to humanity: microorganisms and climate change.

Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, Jansson JK, Karl DM, Koskella B, Mark Welch DB, Martiny JBH, Moran MA, Orphan VJ, Reay DS, Remais JV, Rich VI, Singh BK, Stein LY, Stewart FJ, Sullivan MB, van Oppen MJH, Weaver SC, Webb EA, Webster NS.

Nat Rev Microbiol. 2019 Sep;17(9):569-586. doi: 10.1038/s41579-019-0222-5. Epub 2019 Jun 18. Review.

PMID:
31213707
2.

Viable cyanobacteria in the deep continental subsurface.

Puente-Sánchez F, Arce-Rodríguez A, Oggerin M, García-Villadangos M, Moreno-Paz M, Blanco Y, Rodríguez N, Bird L, Lincoln SA, Tornos F, Prieto-Ballesteros O, Freeman KH, Pieper DH, Timmis KN, Amils R, Parro V.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10702-10707. doi: 10.1073/pnas.1808176115. Epub 2018 Oct 1.

3.

Farewell Stan Stanley Falkow: 1934-2018.

Cabello FC, Cohen SN, Curtiss R 3rd, Dougan G, van Embden J, Finlay BB, Heffron F, Helinski D, Hull R, Hull S, Isberg R, Kopecko DJ, Levy S, Mekalanos J, Ortiz JM, Rappuoli R, Roberts MC, So M, Timmis KN.

Environ Microbiol. 2018 Jul;20(7):2322-2333. doi: 10.1111/1462-2920.14308. Epub 2018 Aug 26. No abstract available.

PMID:
30146753
4.

Protein complex formation during denitrification by Pseudomonas aeruginosa.

Borrero-de Acuña JM, Timmis KN, Jahn M, Jahn D.

Microb Biotechnol. 2017 Nov;10(6):1523-1534. doi: 10.1111/1751-7915.12851. Epub 2017 Aug 31. Review. Erratum in: Microb Biotechnol. 2018 Mar;11(2):431.

5.

Pristine but metal-rich Río Sucio (Dirty River) is dominated by Gallionella and other iron-sulfur oxidizing microbes.

Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Libby E, Rojas L, Cambronero JC, Pieper DH, Timmis KN, Chavarría M.

Extremophiles. 2017 Mar;21(2):235-243. doi: 10.1007/s00792-016-0898-7. Epub 2016 Dec 8.

PMID:
27933457
6.

A routine check-up at the digital medical centre.

Timmis KN, Timmis JK.

Microb Biotechnol. 2017 Jan;10(1):25-27. doi: 10.1111/1751-7915.12454. Epub 2016 Dec 1. No abstract available.

7.

Singh Chhatwal: A magical scholar and exceptional Streptococcus researcher.

Timmis KN.

Environ Microbiol Rep. 2016 Oct;8(5):550-552. doi: 10.1111/1758-2229.12458. No abstract available.

PMID:
30240168
8.

Protein Network of the Pseudomonas aeruginosa Denitrification Apparatus.

Borrero-de Acuña JM, Rohde M, Wissing J, Jänsch L, Schobert M, Molinari G, Timmis KN, Jahn M, Jahn D.

J Bacteriol. 2016 Apr 14;198(9):1401-13. doi: 10.1128/JB.00055-16. Print 2016 May.

9.

A Periplasmic Complex of the Nitrite Reductase NirS, the Chaperone DnaK, and the Flagellum Protein FliC Is Essential for Flagellum Assembly and Motility in Pseudomonas aeruginosa.

Borrero-de Acuña JM, Molinari G, Rohde M, Dammeyer T, Wissing J, Jänsch L, Arias S, Jahn M, Schobert M, Timmis KN, Jahn D.

J Bacteriol. 2015 Oct;197(19):3066-75. doi: 10.1128/JB.00415-15. Epub 2015 Jul 13.

10.

Farewell to Bernard Witholt, A pioneering microbial biotechnologist.

Timmis KN.

Microb Biotechnol. 2015 Jul;8(4):621-2. doi: 10.1111/1751-7915.12293_4. No abstract available.

11.

Concomitant osmotic and chaotropicity-induced stresses in Aspergillus wentii: compatible solutes determine the biotic window.

de Lima Alves F, Stevenson A, Baxter E, Gillion JL, Hejazi F, Hayes S, Morrison IE, Prior BA, McGenity TJ, Rangel DE, Magan N, Timmis KN, Hallsworth JE.

Curr Genet. 2015 Aug;61(3):457-77. doi: 10.1007/s00294-015-0496-8. Epub 2015 Jun 9.

PMID:
26055444
12.

Is there a common water-activity limit for the three domains of life?

Stevenson A, Cray JA, Williams JP, Santos R, Sahay R, Neuenkirchen N, McClure CD, Grant IR, Houghton JD, Quinn JP, Timson DJ, Patil SV, Singhal RS, Antón J, Dijksterhuis J, Hocking AD, Lievens B, Rangel DE, Voytek MA, Gunde-Cimerman N, Oren A, Timmis KN, McGenity TJ, Hallsworth JE.

ISME J. 2015 Jun;9(6):1333-51. doi: 10.1038/ismej.2014.219. Epub 2014 Dec 12.

13.

Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea.

Chronopoulou PM, Sanni GO, Silas-Olu DI, van der Meer JR, Timmis KN, Brussaard CP, McGenity TJ.

Microb Biotechnol. 2015 May;8(3):434-47. doi: 10.1111/1751-7915.12176. Epub 2014 Sep 24.

14.

Multiplication of microbes below 0.690 water activity: implications for terrestrial and extraterrestrial life.

Stevenson A, Burkhardt J, Cockell CS, Cray JA, Dijksterhuis J, Fox-Powell M, Kee TP, Kminek G, McGenity TJ, Timmis KN, Timson DJ, Voytek MA, Westall F, Yakimov MM, Hallsworth JE.

Environ Microbiol. 2015 Feb;17(2):257-77. doi: 10.1111/1462-2920.12598. Epub 2014 Sep 28. Review.

15.
16.

Adaptation of the hydrocarbonoclastic bacterium Alcanivorax borkumensis SK2 to alkanes and toxic organic compounds: a physiological and transcriptomic approach.

Naether DJ, Slawtschew S, Stasik S, Engel M, Olzog M, Wick LY, Timmis KN, Heipieper HJ.

Appl Environ Microbiol. 2013 Jul;79(14):4282-93. doi: 10.1128/AEM.00694-13. Epub 2013 May 3.

17.

Tight coupling of polymerization and depolymerization of polyhydroxyalkanoates ensures efficient management of carbon resources in Pseudomonas putida.

Arias S, Bassas-Galia M, Molinari G, Timmis KN.

Microb Biotechnol. 2013 Sep;6(5):551-63. doi: 10.1111/1751-7915.12040. Epub 2013 Feb 28.

18.

Impact of a simulated oil spill on benthic phototrophs and nitrogen-fixing bacteria in mudflat mesocosms.

Chronopoulou PM, Fahy A, Coulon F, Païssé S, Goñi-Urriza M, Peperzak L, Acuña Alvarez L, McKew BA, Lawson T, Timmis KN, Duran R, Underwood GJ, McGenity TJ.

Environ Microbiol. 2013 Jan;15(1):242-52. doi: 10.1111/j.1462-2920.2012.02864.x. Epub 2012 Sep 16.

PMID:
22978606
19.

Central role of dynamic tidal biofilms dominated by aerobic hydrocarbonoclastic bacteria and diatoms in the biodegradation of hydrocarbons in coastal mudflats.

Coulon F, Chronopoulou PM, Fahy A, Païssé S, Goñi-Urriza M, Peperzak L, Acuña Alvarez L, McKew BA, Brussaard CP, Underwood GJ, Timmis KN, Duran R, McGenity TJ.

Appl Environ Microbiol. 2012 May;78(10):3638-48. doi: 10.1128/AEM.00072-12. Epub 2012 Mar 9.

20.

Plant original Massilia isolates producing polyhydroxybutyrate, including one exhibiting high yields from glycerol.

Bassas-Galia M, Nogales B, Arias S, Rohde M, Timmis KN, Molinari G.

J Appl Microbiol. 2012 Mar;112(3):443-54. doi: 10.1111/j.1365-2672.2011.05228.x.

21.

Transcriptional profiling of the marine oil-degrading bacterium Alcanivorax borkumensis during growth on n-alkanes.

Sabirova JS, Becker A, Lünsdorf H, Nicaud JM, Timmis KN, Golyshin PN.

FEMS Microbiol Lett. 2011 Jun;319(2):160-8. doi: 10.1111/j.1574-6968.2011.02279.x. Epub 2011 Apr 20.

22.

Efficient production of soluble recombinant single chain Fv fragments by a Pseudomonas putida strain KT2440 cell factory.

Dammeyer T, Steinwand M, Krüger SC, Dübel S, Hust M, Timmis KN.

Microb Cell Fact. 2011 Feb 21;10:11. doi: 10.1186/1475-2859-10-11.

23.

Retraction.

Beloqui A, Guazzaroni ME, Pazos F, Vieites JM, Godoy M, Golyshina OV, Chernikova TN, Waliczek A, Silva-Rocha R, Al-Ramahi Y, La Cono V, Mendez C, Salas JA, Solano R, Yakimov MM, Timmis KN, Golyshin PN, Ferrer M.

Science. 2010 Nov 12;330(6006):912. doi: 10.1126/science.330.6006.912-a. No abstract available.

PMID:
21071648
24.

Novel hybrid esterase-haloacid dehalogenase enzyme.

Beloqui A, Polaina J, Vieites JM, Reyes-Duarte D, Torres R, Golyshina OV, Chernikova TN, Waliczek A, Aharoni A, Yakimov MM, Timmis KN, Golyshin PN, Ferrer M.

Chembiochem. 2010 Sep 24;11(14):1975-8. doi: 10.1002/cbic.201000258. No abstract available.

PMID:
20715265
25.

Halophilic archaea in the human intestinal mucosa.

Oxley AP, Lanfranconi MP, Würdemann D, Ott S, Schreiber S, McGenity TJ, Timmis KN, Nogales B.

Environ Microbiol. 2010 Sep;12(9):2398-410. doi: 10.1111/j.1462-2920.2010.02212.x. Epub 2010 Apr 23.

PMID:
20438582
26.

Effect of the earthworms Lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil.

Nechitaylo TY, Yakimov MM, Godinho M, Timmis KN, Belogolova E, Byzov BA, Kurakov AV, Jones DL, Golyshin PN.

Microb Ecol. 2010 Apr;59(3):574-87. doi: 10.1007/s00248-009-9604-y. Epub 2009 Nov 4.

PMID:
19888626
27.

Reactome array: forging a link between metabolome and genome.

Beloqui A, Guazzaroni ME, Pazos F, Vieites JM, Godoy M, Golyshina OV, Chernikova TN, Waliczek A, Silva-Rocha R, Al-Ramahi Y, La Cono V, Mendez C, Salas JA, Solano R, Yakimov MM, Timmis KN, Golyshin PN, Ferrer M.

Science. 2009 Oct 9;326(5950):252-7. doi: 10.1126/science.1174094. Retraction in: Beloqui A, Guazzaroni ME, Pazos F, Vieites JM, Godoy M, Golyshina OV, Chernikova TN, Waliczek A, Silva-Rocha R, Al-Ramahi Y, La Cono V, Mendez C, Salas JA, Solano R, Yakimov MM, Timmis KN, Golyshin PN, Ferrer M. Science. 2010 Nov 12;330(6006):912.

28.

Characterization of marine isoprene-degrading communities.

Alvarez LA, Exton DA, Timmis KN, Suggett DJ, McGenity TJ.

Environ Microbiol. 2009 Dec;11(12):3280-91. doi: 10.1111/j.1462-2920.2009.02069.x. Epub 2009 Oct 5.

PMID:
19807779
29.

Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.

Golyshina OV, Yakimov MM, Lünsdorf H, Ferrer M, Nimtz M, Timmis KN, Wray V, Tindall BJ, Golyshin PN.

Int J Syst Evol Microbiol. 2009 Nov;59(Pt 11):2815-23. doi: 10.1099/ijs.0.009639-0. Epub 2009 Jul 23.

PMID:
19628615
30.

Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov.

Würdemann D, Tindall BJ, Pukall R, Lünsdorf H, Strömpl C, Namuth T, Nahrstedt H, Wos-Oxley M, Ott S, Schreiber S, Timmis KN, Oxley AP.

Int J Syst Evol Microbiol. 2009 Jun;59(Pt 6):1405-15. doi: 10.1099/ijs.0.005900-0.

PMID:
19502325
31.

Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation.

Gertler C, Gerdts G, Timmis KN, Golyshin PN.

FEMS Microbiol Ecol. 2009 Aug;69(2):288-300. doi: 10.1111/j.1574-6941.2009.00693.x. Epub 2009 Apr 27.

32.

'Candidatus Lumbricincola', a novel lineage of uncultured Mollicutes from earthworms of family Lumbricidae.

Nechitaylo TY, Timmis KN, Golyshin PN.

Environ Microbiol. 2009 Apr;11(4):1016-26.

PMID:
19396950
33.

Bacterial consortium proteomics under 4-chlorosalicylate carbon-limiting conditions.

Bobadilla Fazzini RA, Bielecka A, Quintas AK, Golyshin PN, Preto MJ, Timmis KN, dos Santos VA.

Proteomics. 2009 Apr;9(8):2273-85. doi: 10.1002/pmic.200800489.

PMID:
19382143
34.

Populations of heavy fuel oil-degrading marine microbial community in presence of oil sorbent materials.

Gertler C, Gerdts G, Timmis KN, Yakimov MM, Golyshin PN.

J Appl Microbiol. 2009 Aug;107(2):590-605. doi: 10.1111/j.1365-2672.2009.04245.x. Epub 2009 Mar 19.

35.

Mixed aerobic and anaerobic microbial communities in benzene-contaminated groundwater.

Aburto A, Fahy A, Coulon F, Lethbridge G, Timmis KN, Ball AS, McGenity TJ.

J Appl Microbiol. 2009 Jan;106(1):317-28. doi: 10.1111/j.1365-2672.2008.04005.x. Epub 2008 Dec 19.

36.

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

Puchałka J, Oberhardt MA, Godinho M, Bielecka A, Regenhardt D, Timmis KN, Papin JA, Martins dos Santos VA.

PLoS Comput Biol. 2008 Oct;4(10):e1000210. doi: 10.1371/journal.pcbi.1000210. Epub 2008 Oct 31.

37.

Metagenomics for mining new genetic resources of microbial communities.

Ferrer M, Beloqui A, Timmis KN, Golyshin PN.

J Mol Microbiol Biotechnol. 2009;16(1-2):109-23. doi: 10.1159/000142898. Epub 2008 Oct 29. Review.

38.

Fungi and inflammatory bowel diseases: Alterations of composition and diversity.

Ott SJ, Kühbacher T, Musfeldt M, Rosenstiel P, Hellmig S, Rehman A, Drews O, Weichert W, Timmis KN, Schreiber S.

Scand J Gastroenterol. 2008;43(7):831-41. doi: 10.1080/00365520801935434.

PMID:
18584522
39.

A purple acidophilic di-ferric DNA ligase from Ferroplasma.

Ferrer M, Golyshina OV, Beloqui A, Böttger LH, Andreu JM, Polaina J, De Lacey AL, Trautwein AX, Timmis KN, Golyshin PN.

Proc Natl Acad Sci U S A. 2008 Jul 1;105(26):8878-83. doi: 10.1073/pnas.0800071105. Epub 2008 Jun 24.

40.

Niche-specificity factors of a marine oil-degrading bacterium Alcanivorax borkumensis SK2.

Sabirova JS, Chernikova TN, Timmis KN, Golyshin PN.

FEMS Microbiol Lett. 2008 Aug;285(1):89-96. doi: 10.1111/j.1574-6968.2008.01222.x. Epub 2008 Jun 28.

41.

Isolation of alkali-tolerant benzene-degrading bacteria from a contaminated aquifer.

Fahy A, Ball AS, Lethbridge G, Timmis KN, McGenity TJ.

Lett Appl Microbiol. 2008 Jul;47(1):60-6. doi: 10.1111/j.1472-765X.2008.02386.x. Epub 2008 Jun 9.

42.

Diversity of Bacillus-like organisms isolated from deep-sea hypersaline anoxic sediments.

Sass AM, McKew BA, Sass H, Fichtel J, Timmis KN, McGenity TJ.

Saline Systems. 2008 Jun 9;4:8. doi: 10.1186/1746-1448-4-8.

43.

High benzene concentrations can favour Gram-positive bacteria in groundwaters from a contaminated aquifer.

Fahy A, Ball AS, Lethbridge G, McGenity TJ, Timmis KN.

FEMS Microbiol Ecol. 2008 Sep;65(3):526-33. doi: 10.1111/j.1574-6941.2008.00518.x. Epub 2008 Jun 6.

44.

Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea.

Yakimov MM, La Cono V, Denaro R, D'Auria G, Decembrini F, Timmis KN, Golyshin PN, Giuliano L.

ISME J. 2007 Dec;1(8):743-55. Epub 2007 Oct 4.

PMID:
18059497
45.

Characterization and role of a metalloprotease induced by chitin in Serratia sp. KCK.

Kim HS, Golyshin PN, Timmis KN.

J Ind Microbiol Biotechnol. 2007 Nov;34(11):715-21. Epub 2007 Aug 1.

PMID:
17668255
46.
47.

Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria.

McKew BA, Coulon F, Yakimov MM, Denaro R, Genovese M, Smith CJ, Osborn AM, Timmis KN, McGenity TJ.

Environ Microbiol. 2007 Jun;9(6):1562-71.

PMID:
17504493
48.

Obligate oil-degrading marine bacteria.

Yakimov MM, Timmis KN, Golyshin PN.

Curr Opin Biotechnol. 2007 Jun;18(3):257-66. Epub 2007 May 9. Review.

PMID:
17493798
49.

Characterization of a chitinolytic enzyme from Serratia sp. KCK isolated from kimchi juice.

Kim HS, Timmis KN, Golyshin PN.

Appl Microbiol Biotechnol. 2007 Jul;75(6):1275-83. Epub 2007 Apr 3.

PMID:
17404729
50.

Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.

Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery J.

Appl Microbiol Biotechnol. 2007 Jul;75(5):1133-42. Epub 2007 Mar 17.

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