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Items: 13

1.

Variations in Copepod Proteome and Respiration Rate in Association with Diel Vertical Migration and Circadian Cycle.

Maas AE, Blanco-Bercial L, Lo A, Tarrant AM, Timmins-Schiffman E.

Biol Bull. 2018 Aug;235(1):30-42. doi: 10.1086/699219. Epub 2018 Aug 16.

PMID:
30160998
2.

MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides.

Timmins-Schiffman E, Mikan MP, Ting YS, Harvey HR, Nunn BL.

Sci Rep. 2018 Jun 18;8(1):9276. doi: 10.1038/s41598-018-27650-4.

3.

MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data.

Riffle M, May DH, Timmins-Schiffman E, Mikan MP, Jaschob D, Noble WS, Nunn BL.

Proteomes. 2017 Dec 27;6(1). pii: E2. doi: 10.3390/proteomes6010002.

4.

Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome.

Smith MC, Timmins-Schiffman E, Coton M, Coton E, Hymery N, Nunn BL, Madec S.

J Proteomics. 2018 Feb 20;173:89-98. doi: 10.1016/j.jprot.2017.11.025. Epub 2017 Dec 5.

PMID:
29208510
5.

Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation.

Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts SB.

J Proteome Res. 2017 Sep 1;16(9):3298-3309. doi: 10.1021/acs.jproteome.7b00288. Epub 2017 Aug 11.

PMID:
28730805
6.

Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon.

Waples RS, Elz A, Arnsberg BD, Faulkner JR, Hard JJ, Timmins-Schiffman E, Park LK.

Evol Appl. 2017 May 19;10(7):667-681. doi: 10.1111/eva.12468. eCollection 2017 Aug.

7.

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns.

Timmins-Schiffman E, May DH, Mikan M, Riffle M, Frazar C, Harvey HR, Noble WS, Nunn BL.

ISME J. 2017 Feb;11(2):309-314. doi: 10.1038/ismej.2016.132. Epub 2016 Nov 8. No abstract available.

8.

An Alignment-Free "Metapeptide" Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing.

May DH, Timmins-Schiffman E, Mikan MP, Harvey HR, Borenstein E, Nunn BL, Noble WS.

J Proteome Res. 2016 Aug 5;15(8):2697-705. doi: 10.1021/acs.jproteome.6b00239. Epub 2016 Jul 19.

9.

Proteomics of Colwellia psychrerythraea at subzero temperatures - a life with limited movement, flexible membranes and vital DNA repair.

Nunn BL, Slattery KV, Cameron KA, Timmins-Schiffman E, Junge K.

Environ Microbiol. 2015 Jul;17(7):2319-35. doi: 10.1111/1462-2920.12691. Epub 2015 Feb 5.

PMID:
25471130
10.

Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas.

Timmins-Schiffman E, Coffey WD, Hua W, Nunn BL, Dickinson GH, Roberts SB.

BMC Genomics. 2014 Nov 3;15:951. doi: 10.1186/1471-2164-15-951.

11.

Genomic resource development for shellfish of conservation concern.

Timmins-Schiffman EB, Friedman CS, Metzger DC, White SJ, Roberts SB.

Mol Ecol Resour. 2013 Mar;13(2):295-305. doi: 10.1111/1755-0998.12052. Epub 2012 Dec 27.

PMID:
23280275
12.

Shotgun proteomics as a viable approach for biological discovery in the Pacific oyster.

Timmins-Schiffman E, Nunn BL, Goodlett DR, Roberts SB.

Conserv Physiol. 2013 May 17;1(1):cot009. doi: 10.1093/conphys/cot009. eCollection 2013.

13.

Characterization of genes involved in ceramide metabolism in the Pacific oyster (Crassostrea gigas).

Timmins-Schiffman E, Roberts S.

BMC Res Notes. 2012 Sep 13;5:502. doi: 10.1186/1756-0500-5-502.

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