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PscB: A Browser to Explore Plant Single Cell RNA-Sequencing Datasets.

Ma X, Denyer T, Timmermans MC.

Plant Physiol. 2020 Mar 24. pii: pp.00250.2020. doi: 10.1104/pp.20.00250. [Epub ahead of print] No abstract available.


Small RNAs as plant morphogens.

Klesen S, Hill K, Timmermans MCP.

Curr Top Dev Biol. 2020;137:455-480. doi: 10.1016/bs.ctdb.2019.11.001. Epub 2019 Dec 27.


A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits.

Knauer S, Javelle M, Li L, Li X, Ma X, Wimalanathan K, Kumari S, Johnston R, Leiboff S, Meeley R, Schnable PS, Ware D, Lawrence-Dill C, Yu J, Muehlbauer GJ, Scanlon MJ, Timmermans MCP.

Genome Res. 2019 Dec;29(12):1962-1973. doi: 10.1101/gr.250878.119. Epub 2019 Nov 19.


Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing.

Denyer T, Ma X, Klesen S, Scacchi E, Nieselt K, Timmermans MCP.

Dev Cell. 2019 Mar 25;48(6):840-852.e5. doi: 10.1016/j.devcel.2019.02.022.


In Situ Localization of Small RNAs in Plants.

Marco CF, Skopelitis DS, Timmermans MCP.

Methods Mol Biol. 2019;1932:159-173. doi: 10.1007/978-1-4939-9042-9_12.


Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels.

Liu S, Schnable JC, Ott A, Yeh CE, Springer NM, Yu J, Muehlbauer G, Timmermans MCP, Scanlon MJ, Schnable PS.

Mol Biol Evol. 2018 Nov 1;35(11):2762-2772. doi: 10.1093/molbev/msy174.


Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs.

Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MMS, Scanlon MJ, Yu J, Schnable PS, Timmermans MCP, Springer NM, Muehlbauer GJ.

Genome Biol. 2018 Aug 23;19(1):122. doi: 10.1186/s13059-018-1508-z.


Gating of miRNA movement at defined cell-cell interfaces governs their impact as positional signals.

Skopelitis DS, Hill K, Klesen S, Marco CF, von Born P, Chitwood DH, Timmermans MCP.

Nat Commun. 2018 Aug 6;9(1):3107. doi: 10.1038/s41467-018-05571-0.


Correction: Mendelian and Non-Mendelian Regulation of Gene Expression in Maize.

Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MCP, Springer NM, Muehlbauer GJ.

PLoS Genet. 2018 Feb 14;14(2):e1007234. doi: 10.1371/journal.pgen.1007234. eCollection 2018 Feb.


Boundary Formation through a Direct Threshold-Based Readout of Mobile Small RNA Gradients.

Skopelitis DS, Benkovics AH, Husbands AY, Timmermans MCP.

Dev Cell. 2017 Nov 6;43(3):265-273.e6. doi: 10.1016/j.devcel.2017.10.003. Epub 2017 Oct 26.


The Sussex signal: insights into leaf dorsiventrality.

Kuhlemeier C, Timmermans MC.

Development. 2016 Sep 15;143(18):3230-7. doi: 10.1242/dev.131888. Review.


In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.

Husbands AY, Aggarwal V, Ha T, Timmermans MC.

Plant Cell. 2016 Aug;28(8):1783-94. doi: 10.1105/tpc.16.00289. Epub 2016 Jul 6.


Ancient trans-Acting siRNAs Confer Robustness and Sensitivity onto the Auxin Response.

Plavskin Y, Nagashima A, Perroud PF, Hasebe M, Quatrano RS, Atwal GS, Timmermans MC.

Dev Cell. 2016 Feb 8;36(3):276-89. doi: 10.1016/j.devcel.2016.01.010.


The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.

Husbands AY, Benkovics AH, Nogueira FT, Lodha M, Timmermans MC.

Plant Cell. 2015 Dec;27(12):3321-35. doi: 10.1105/tpc.15.00454. Epub 2015 Nov 20.


Genetic control of morphometric diversity in the maize shoot apical meristem.

Leiboff S, Li X, Hu HC, Todt N, Yang J, Li X, Yu X, Muehlbauer GJ, Timmermans MC, Yu J, Schnable PS, Scanlon MJ.

Nat Commun. 2015 Nov 20;6:8974. doi: 10.1038/ncomms9974.


Laser Microdissection-Mediated Isolation and In Vitro Transcriptional Amplification of Plant RNA.

Chandran D, Scanlon MJ, Ohtsu K, Timmermans MCP, Schnable PS, Wildermuth MC.

Curr Protoc Mol Biol. 2015 Oct 1;112:25A.3.1-25A.3.23. doi: 10.1002/0471142727.mb25a03s112.


Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in Maize Development.

Petsch K, Manzotti PS, Tam OH, Meeley R, Hammell M, Consonni G, Timmermans MC.

Plant Cell. 2015 Aug;27(8):2163-77. doi: 10.1105/tpc.15.00194. Epub 2015 Jul 24.


Diversity of maize shoot apical meristem architecture and its relationship to plant morphology.

Thompson AM, Yu J, Timmermans MC, Schnable P, Crants JC, Scanlon MJ, Muehlbauer GJ.

G3 (Bethesda). 2015 Mar 5;5(5):819-27. doi: 10.1534/g3.115.017541.


Genome-wide analysis of leafbladeless1-regulated and phased small RNAs underscores the importance of the TAS3 ta-siRNA pathway to maize development.

Dotto MC, Petsch KA, Aukerman MJ, Beatty M, Hammell M, Timmermans MC.

PLoS Genet. 2014 Dec 11;10(12):e1004826. doi: 10.1371/journal.pgen.1004826. eCollection 2014 Dec.


Developmental patterning by gradients of mobile small RNAs.

Benkovics AH, Timmermans MC.

Curr Opin Genet Dev. 2014 Aug;27:83-91. doi: 10.1016/j.gde.2014.04.004. Epub 2014 Jun 12. Review.


Genetic control of maize shoot apical meristem architecture.

Thompson AM, Crants J, Schnable PS, Yu J, Timmermans MC, Springer NM, Scanlon MJ, Muehlbauer GJ.

G3 (Bethesda). 2014 May 22;4(7):1327-37. doi: 10.1534/g3.114.011940.


Genome-wide discovery and characterization of maize long non-coding RNAs.

Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MM, Scanlon MJ, Yu J, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ.

Genome Biol. 2014 Feb 27;15(2):R40. doi: 10.1186/gb-2014-15-2-r40. Erratum in: Genome Biol. 2018 Aug 23;19(1):122.


The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2.

Lodha M, Marco CF, Timmermans MC.

Genes Dev. 2013 Mar 15;27(6):596-601. doi: 10.1101/gad.211425.112. Epub 2013 Mar 6.


Mendelian and non-Mendelian regulation of gene expression in maize.

Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ.

PLoS Genet. 2013;9(1):e1003202. doi: 10.1371/journal.pgen.1003202. Epub 2013 Jan 17. Erratum in: PLoS Genet. 2018 Feb 14;14 (2):e1007234.


A protodermal miR394 signal defines a region of stem cell competence in the Arabidopsis shoot meristem.

Knauer S, Holt AL, Rubio-Somoza I, Tucker EJ, Hinze A, Pisch M, Javelle M, Timmermans MC, Tucker MR, Laux T.

Dev Cell. 2013 Jan 28;24(2):125-32. doi: 10.1016/j.devcel.2012.12.009. Epub 2013 Jan 17.


Small RNA-regulated networks and the evolution of novel structures in plants.

Plavskin Y, Timmermans MC.

Cold Spring Harb Symp Quant Biol. 2012;77:221-33. doi: 10.1101/sqb.2013.77.014878. Epub 2013 Jan 9. Review.


Ontogeny of the maize shoot apical meristem.

Takacs EM, Li J, Du C, Ponnala L, Janick-Buckner D, Yu J, Muehlbauer GJ, Schnable PS, Timmermans MC, Sun Q, Nettleton D, Scanlon MJ.

Plant Cell. 2012 Aug;24(8):3219-34. Epub 2012 Aug 21.


Genic and nongenic contributions to natural variation of quantitative traits in maize.

Li X, Zhu C, Yeh CT, Wu W, Takacs EM, Petsch KA, Tian F, Bai G, Buckler ES, Muehlbauer GJ, Timmermans MC, Scanlon MJ, Schnable PS, Yu J.

Genome Res. 2012 Dec;22(12):2436-44. doi: 10.1101/gr.140277.112. Epub 2012 Jun 14.


Punctate vascular expression1 is a novel maize gene required for leaf pattern formation that functions downstream of the trans-acting small interfering RNA pathway.

Zhang X, Douglas RN, Strable J, Lee M, Buckner B, Janick-Buckner D, Schnable PS, Timmermans MC, Scanlon MJ.

Plant Physiol. 2012 Aug;159(4):1453-62. doi: 10.1104/pp.111.192419. Epub 2012 Jun 5.


In situ localization of small RNAs in plants by using LNA probes.

Javelle M, Timmermans MC.

Nat Protoc. 2012 Feb 23;7(3):533-41. doi: 10.1038/nprot.2012.006.


Plant small RNAs as morphogens.

Skopelitis DS, Husbands AY, Timmermans MC.

Curr Opin Cell Biol. 2012 Apr;24(2):217-24. doi: 10.1016/ Epub 2011 Dec 29. Review.


Small RNAs are on the move.

Chitwood DH, Timmermans MC.

Nature. 2010 Sep 23;467(7314):415-9. doi: 10.1038/nature09351. Review.


Signaling sides adaxial-abaxial patterning in leaves.

Kidner CA, Timmermans MC.

Curr Top Dev Biol. 2010;91:141-68. doi: 10.1016/S0070-2153(10)91005-3. Review.


ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves.

Douglas RN, Wiley D, Sarkar A, Springer N, Timmermans MC, Scanlon MJ.

Plant Cell. 2010 May;22(5):1441-51. doi: 10.1105/tpc.109.071613. Epub 2010 May 7.


Signals and prepatterns: new insights into organ polarity in plants.

Husbands AY, Chitwood DH, Plavskin Y, Timmermans MC.

Genes Dev. 2009 Sep 1;23(17):1986-97. doi: 10.1101/gad.1819909. Review.


Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA.

Scanlon MJ, Ohtsu K, Timmermans MC, Schnable PS.

Curr Protoc Mol Biol. 2009 Jul;Chapter 25:Unit 25A.3. doi: 10.1002/0471142727.mb25a03s87.


Microdissection of shoot meristem functional domains.

Brooks L 3rd, Strable J, Zhang X, Ohtsu K, Zhou R, Sarkar A, Hargreaves S, Elshire RJ, Eudy D, Pawlowska T, Ware D, Janick-Buckner D, Buckner B, Timmermans MC, Schnable PS, Nettleton D, Scanlon MJ.

PLoS Genet. 2009 May;5(5):e1000476. doi: 10.1371/journal.pgen.1000476. Epub 2009 May 8.


Pattern formation via small RNA mobility.

Chitwood DH, Nogueira FT, Howell MD, Montgomery TA, Carrington JC, Timmermans MC.

Genes Dev. 2009 Mar 1;23(5):549-54. doi: 10.1101/gad.1770009.


Genetic and epigenetic regulation of stem cell homeostasis in plants.

Lodha M, Marco CF, Timmermans MC.

Cold Spring Harb Symp Quant Biol. 2008;73:243-51. doi: 10.1101/sqb.2008.73.044. Epub 2009 Jan 15. Review.


Regulation of small RNA accumulation in the maize shoot apex.

Nogueira FT, Chitwood DH, Madi S, Ohtsu K, Schnable PS, Scanlon MJ, Timmermans MC.

PLoS Genet. 2009 Jan;5(1):e1000320. doi: 10.1371/journal.pgen.1000320. Epub 2009 Jan 2.


Direct repression of KNOX loci by the ASYMMETRIC LEAVES1 complex of Arabidopsis.

Guo M, Thomas J, Collins G, Timmermans MC.

Plant Cell. 2008 Jan;20(1):48-58. doi: 10.1105/tpc.107.056127. Epub 2008 Jan 18.


An Interplay Between Small Regulatory RNAs Patterns Leaves.

Nogueira FTs, Timmermans MC.

Plant Signal Behav. 2007 Nov;2(6):519-21.


Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).

Ohtsu K, Smith MB, Emrich SJ, Borsuk LA, Zhou R, Chen T, Zhang X, Timmermans MC, Beck J, Buckner B, Janick-Buckner D, Nettleton D, Scanlon MJ, Schnable PS.

Plant J. 2007 Nov;52(3):391-404. Epub 2007 Aug 23.


Target mimics modulate miRNAs.

Chitwood DH, Timmermans MC.

Nat Genet. 2007 Aug;39(8):935-6. No abstract available.


Two small regulatory RNAs establish opposing fates of a developmental axis.

Nogueira FT, Madi S, Chitwood DH, Juarez MT, Timmermans MC.

Genes Dev. 2007 Apr 1;21(7):750-5.


Organ polarity in plants is specified through the opposing activity of two distinct small regulatory RNAs.

Nogueira FT, Sarkar AK, Chitwood DH, Timmermans MC.

Cold Spring Harb Symp Quant Biol. 2006;71:157-64. Review.


Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex.

Chitwood DH, Guo M, Nogueira FT, Timmermans MC.

Development. 2007 Mar;134(5):813-23. Epub 2007 Jan 24. Review.


Mixing and matching pathways in leaf polarity.

Kidner CA, Timmermans MC.

Curr Opin Plant Biol. 2007 Feb;10(1):13-20. Epub 2006 Nov 30. Review.


A conserved microRNA signal specifies leaf polarity.

Timmermans MC, Juarez MT, Phelps-Durr TL.

Cold Spring Harb Symp Quant Biol. 2004;69:409-17. Review. No abstract available.


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