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Quantitative trait loci analysis of brown blotch resistance in cowpea variety KN1.

Ohlson EW, Thio GI, Sawadogo M, Sérémé P, Timko MP.

Mol Breed. 2018;38(9):110. doi: 10.1007/s11032-018-0867-1. Epub 2018 Aug 16.


Evidence for the Role of the Cecal Microbiome in Maintenance of Immune Regulation and Homeostasis.

Chhabra P, Spano AJ, Bowers D, Ren T, Moore DJ, Timko MP, Wu M, Brayman KL.

Ann Surg. 2018 Sep;268(3):541-549. doi: 10.1097/SLA.0000000000002930.


The Circular RNA Profiles of Colorectal Tumor Metastatic Cells.

Jiang W, Zhang X, Chu Q, Lu S, Zhou L, Lu X, Liu C, Mao L, Ye C, Timko MP, Fan L, Ju H.

Front Genet. 2018 Feb 9;9:34. doi: 10.3389/fgene.2018.00034. eCollection 2018.


A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.).

Misra VA, Wang Y, Timko MP.

BMC Genomics. 2017 Nov 22;18(1):898. doi: 10.1186/s12864-017-4306-1.


Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed.

Guo L, Qiu J, Ye C, Jin G, Mao L, Zhang H, Yang X, Peng Q, Wang Y, Jia L, Lin Z, Li G, Fu F, Liu C, Chen L, Shen E, Wang W, Chu Q, Wu D, Wu S, Xia C, Zhang Y, Zhou X, Wang L, Wu L, Song W, Wang Y, Shu Q, Aoki D, Yumoto E, Yokota T, Miyamoto K, Okada K, Kim DS, Cai D, Zhang C, Lou Y, Qian Q, Yamaguchi H, Yamane H, Kong CH, Timko MP, Bai L, Fan L.

Nat Commun. 2017 Oct 18;8(1):1031. doi: 10.1038/s41467-017-01067-5.


A naive Bayes algorithm for tissue origin diagnosis (TOD-Bayes) of synchronous multifocal tumors in the hepatobiliary and pancreatic system.

Jiang W, Shen Y, Ding Y, Ye C, Zheng Y, Zhao P, Liu L, Tong Z, Zhou L, Sun S, Zhang X, Teng L, Timko MP, Fan L, Fang W.

Int J Cancer. 2018 Jan 15;142(2):357-368. doi: 10.1002/ijc.31054. Epub 2017 Oct 16. Erratum in: Int J Cancer. 2018 Jul 1;143(1):E2.


Analysis of transcriptional and epigenetic changes in hybrid vigor of allopolyploid Brassica napus uncovers key roles for small RNAs.

Shen Y, Sun S, Hua S, Shen E, Ye CY, Cai D, Timko MP, Zhu QH, Fan L.

Plant J. 2017 Sep;91(5):874-893. doi: 10.1111/tpj.13605. Epub 2017 Jul 3.


Genomic variation associated with local adaptation of weedy rice during de-domestication.

Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, Qi T, Wu S, Sultana MH, Cao YN, Wang Y, Timko MP, Ge S, Fan L, Lu Y.

Nat Commun. 2017 May 24;8:15323. doi: 10.1038/ncomms15323.


Transcriptome-wide analysis of jasmonate-treated BY-2 cells reveals new transcriptional regulators associated with alkaloid formation in tobacco.

Yang Y, Yan P, Yi C, Li W, Chai Y, Fei L, Gao P, Zhao H, Wang Y, Timko MP, Wang B, Han S.

J Plant Physiol. 2017 Aug;215:1-10. doi: 10.1016/j.jplph.2017.05.004. Epub 2017 May 4.


Novel Sources of Witchweed (Striga) Resistance from Wild Sorghum Accessions.

Mbuvi DA, Masiga CW, Kuria E, Masanga J, Wamalwa M, Mohamed A, Odeny DA, Hamza N, Timko MP, Runo S.

Front Plant Sci. 2017 Feb 6;8:116. doi: 10.3389/fpls.2017.00116. eCollection 2017.


Organ- and Growing Stage-Specific Expression of Solanesol Biosynthesis Genes in Nicotiana tabacum Reveals Their Association with Solanesol Content.

Yan N, Zhang H, Zhang Z, Shi J, Timko MP, Du Y, Liu X, Liu Y.

Molecules. 2016 Nov 15;21(11). pii: E1536.


Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.

Yang Z, Zhang Y, Wafula EK, Honaas LA, Ralph PE, Jones S, Clarke CR, Liu S, Su C, Zhang H, Altman NS, Schuster SC, Timko MP, Yoder JI, Westwood JH, dePamphilis CW.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E7010-E7019. doi: 10.1073/pnas.1608765113. Epub 2016 Oct 24.


Genome resources for climate-resilient cowpea, an essential crop for food security.

Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.

Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.


Alternative splicing of basic chitinase gene PR3b in the low-nicotine mutants of Nicotiana tabacum L. cv. Burley 21.

Ma H, Wang F, Wang W, Yin G, Zhang D, Ding Y, Timko MP, Zhang H.

J Exp Bot. 2016 Oct;67(19):5799-5809. Epub 2016 Sep 23.


Transcriptome profiling of tobacco under water deficit conditions.

Rabara RC, Tripathi P, Choudhary MK, Timko MP, Shen QJ, Rushton PJ.

Genom Data. 2015 Jun 2;5:61-3. doi: 10.1016/j.gdata.2015.05.025. eCollection 2015 Sep.


Tobacco drought stress responses reveal new targets for Solanaceae crop improvement.

Rabara RC, Tripathi P, Reese RN, Rushton DL, Alexander D, Timko MP, Shen QJ, Rushton PJ.

BMC Genomics. 2015 Jun 30;16:484. doi: 10.1186/s12864-015-1575-4.


Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty.

Yang Z, Wafula EK, Honaas LA, Zhang H, Das M, Fernandez-Aparicio M, Huang K, Bandaranayake PC, Wu B, Der JP, Clarke CR, Ralph PE, Landherr L, Altman NS, Timko MP, Yoder JI, Westwood JH, dePamphilis CW.

Mol Biol Evol. 2015 Mar;32(3):767-90. doi: 10.1093/molbev/msu343. Epub 2014 Dec 21.


Solanaceae plant malformation in Chongqing City, China, reveals a pollution threat to the Yangtze River.

Zhang H, Liu G, Timko MP, Li J, Wang W, Ma H.

Environ Sci Technol. 2014 Oct 21;48(20):11787-93. doi: 10.1021/es501502y. Epub 2014 Oct 9.


The F-box protein COI1 functions upstream of MYB305 to regulate primary carbohydrate metabolism in tobacco (Nicotiana tabacum L. cv. TN90).

Wang W, Liu G, Niu H, Timko MP, Zhang H.

J Exp Bot. 2014 May;65(8):2147-60. doi: 10.1093/jxb/eru084. Epub 2014 Mar 6.


Striga hermonthica MAX2 restores branching but not the Very Low Fluence Response in the Arabidopsis thaliana max2 mutant.

Liu Q, Zhang Y, Matusova R, Charnikhova T, Amini M, Jamil M, Fernandez-Aparicio M, Huang K, Timko MP, Westwood JH, Ruyter-Spira C, van der Krol S, Bouwmeester HJ.

New Phytol. 2014 Apr;202(2):531-41. doi: 10.1111/nph.12692. Epub 2014 Jan 31.


NtERF32: a non-NIC2 locus AP2/ERF transcription factor required in jasmonate-inducible nicotine biosynthesis in tobacco.

Sears MT, Zhang H, Rushton PJ, Wu M, Han S, Spano AJ, Timko MP.

Plant Mol Biol. 2014 Jan;84(1-2):49-66. doi: 10.1007/s11103-013-0116-2. Epub 2013 Aug 11.


Quantitative trait loci analysis of flowering time related traits identified in recombinant inbred lines of cowpea (Vigna unguiculata).

Andargie M, Pasquet RS, Muluvi GM, Timko MP.

Genome. 2013 May;56(5):289-94. doi: 10.1139/gen-2013-0028. Epub 2013 May 21.


Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species.

Zhang Y, Fernandez-Aparicio M, Wafula EK, Das M, Jiao Y, Wickett NJ, Honaas LA, Ralph PE, Wojciechowski MF, Timko MP, Yoder JI, Westwood JH, Depamphilis CW.

BMC Evol Biol. 2013 Feb 20;13:48. doi: 10.1186/1471-2148-13-48.


Functional genomics of a generalist parasitic plant: laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression.

Honaas LA, Wafula EK, Yang Z, Der JP, Wickett NJ, Altman NS, Taylor CG, Yoder JI, Timko MP, Westwood JH, dePamphilis CW.

BMC Plant Biol. 2013 Jan 9;13:9. doi: 10.1186/1471-2229-13-9.


Application of qRT-PCR and RNA-Seq analysis for the identification of housekeeping genes useful for normalization of gene expression values during Striga hermonthica development.

Fernández-Aparicio M, Huang K, Wafula EK, Honaas LA, Wickett NJ, Timko MP, Depamphilis CW, Yoder JI, Westwood JH.

Mol Biol Rep. 2013 Apr;40(4):3395-407. doi: 10.1007/s11033-012-2417-y. Epub 2012 Dec 28.


Global changes in gene expression during compatible and incompatible interactions of cowpea (Vigna unguiculata L.) with the root parasitic angiosperm Striga gesnerioides.

Huang K, Mellor KE, Paul SN, Lawson MJ, Mackey AJ, Timko MP.

BMC Genomics. 2012 Aug 17;13:402. doi: 10.1186/1471-2164-13-402.


Lactic acid production by Streptococcus thermophilus alters Clostridium difficile infection and in vitro Toxin A production.

Kolling GL, Wu M, Warren CA, Durmaz E, Klaenhammer TR, Timko MP, Guerrant RL.

Gut Microbes. 2012 Nov-Dec;3(6):523-9. doi: 10.4161/gmic.21757. Epub 2012 Aug 16. Erratum in: Gut Microbes. 2013 Mar-Apr;4(2):175. Timko, Michael P [added].


Genetic relationship of cowpea (Vigna unguiculata) varieties from Senegal based on SSR markers.

Badiane FA, Gowda BS, Cissé N, Diouf D, Sadio O, Timko MP.

Genet Mol Res. 2012 Feb 8;11(1):292-304. doi: 10.4238/2012.February.8.4.


Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis.

Wickett NJ, Honaas LA, Wafula EK, Das M, Huang K, Wu B, Landherr L, Timko MP, Yoder J, Westwood JH, dePamphilis CW.

Curr Biol. 2011 Dec 20;21(24):2098-104. doi: 10.1016/j.cub.2011.11.011. Epub 2011 Dec 8.


Tobacco transcription factors NtMYC2a and NtMYC2b form nuclear complexes with the NtJAZ1 repressor and regulate multiple jasmonate-inducible steps in nicotine biosynthesis.

Zhang HB, Bokowiec MT, Rushton PJ, Han SC, Timko MP.

Mol Plant. 2012 Jan;5(1):73-84. doi: 10.1093/mp/ssr056. Epub 2011 Jul 10.


Leaf and root pectin methylesterase activity and 13C/12C stable isotopic ratio measurements of methanol emissions give insight into methanol production in Lycopersicon esculentum.

Oikawa PY, Giebel BM, Sternberg Lda S, Li L, Timko MP, Swart PK, Riemer DD, Mak JE, Lerdau MT.

New Phytol. 2011 Sep;191(4):1031-40. doi: 10.1111/j.1469-8137.2011.03770.x. Epub 2011 May 19.


High level transgenic expression of soybean (Glycine max) GmERF and Gmubi gene promoters isolated by a novel promoter analysis pipeline.

Hernandez-Garcia CM, Bouchard RA, Rushton PJ, Jones ML, Chen X, Timko MP, Finer JJ.

BMC Plant Biol. 2010 Nov 4;10:237. doi: 10.1186/1471-2229-10-237.


The evolution of parasitism in plants.

Westwood JH, Yoder JI, Timko MP, dePamphilis CW.

Trends Plant Sci. 2010 Apr;15(4):227-35. doi: 10.1016/j.tplants.2010.01.004. Epub 2010 Feb 10. Review.


Gene-for-gene resistance in Striga-cowpea associations.

Li J, Timko MP.

Science. 2009 Aug 28;325(5944):1094. doi: 10.1126/science.1174754.


Molecular genetics of race-specific resistance of cowpea to Striga gesnerioides (Willd.).

Li J, Lis KE, Timko MP.

Pest Manag Sci. 2009 May;65(5):520-7. doi: 10.1002/ps.1722. Review.


Primary Haustorial Development of Striga asiatica on Host and Nonhost Species.

Hood ME, Condon JM, Timko MP, Riopel JL.

Phytopathology. 1998 Jan;88(1):70-5. doi: 10.1094/PHYTO.1998.88.1.70.


Genetic Structure and Analysis of Host and Nonhost Interactions of Striga gesnerioides (Witchweed) from Central Florida.

Botanga CJ, Timko MP.

Phytopathology. 2005 Oct;95(10):1166-73. doi: 10.1094/PHYTO-95-1166.


Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae.

Rushton PJ, Bokowiec MT, Han S, Zhang H, Brannock JF, Chen X, Laudeman TW, Timko MP.

Plant Physiol. 2008 May;147(1):280-95. doi: 10.1104/pp.107.114041. Epub 2008 Mar 12.


Sequencing and analysis of the gene-rich space of cowpea.

Timko MP, Rushton PJ, Laudeman TW, Bokowiec MT, Chipumuro E, Cheung F, Town CD, Chen X.

BMC Genomics. 2008 Feb 27;9:103. doi: 10.1186/1471-2164-9-103.


TOBFAC: the database of tobacco transcription factors.

Rushton PJ, Bokowiec MT, Laudeman TW, Brannock JF, Chen X, Timko MP.

BMC Bioinformatics. 2008 Jan 25;9:53. doi: 10.1186/1471-2105-9-53.


Expression of a recombinant human sperm-agglutinating mini-antibody in tobacco (Nicotiana tabacum L.).

Xu B, Copolla M, Herr JC, Timko MP.

Soc Reprod Fertil Suppl. 2007;63:465-77.


CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.


AFLP markers linked to resistance against Striga gesnerioides race 1 in cowpea (Vigna unguiculata).

Ouédraogo JT, Tignegre JB, Timko MP, Beizile FJ.

Genome. 2002 Oct;45(5):787-93.


An improved genetic linkage map for cowpea (Vigna unguiculata L.) combining AFLP, RFLP, RAPD, biochemical markers, and biological resistance traits.

Ouédraogo JT, Gowda BS, Jean M, Close TJ, Ehlers JD, Hall AE, Gillaspie AG, Roberts PA, Ismail AM, Bruening G, Gepts P, Timko MP, Belzile FJ.

Genome. 2002 Feb;45(1):175-88.


The distribution of protochlorophyllide and chlorophyll within seedlings of the lip1 mutant of Pea.

Seyedi M, Timko MP, Sundqvist C.

Plant Cell Physiol. 2001 Sep;42(9):931-41.


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