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Items: 30

1.

Spike-in genomic DNA for validating performance of metagenomics workflows.

Venkataraman A, Parlov M, Hu P, Schnell D, Wei X, Tiesman JP.

Biotechniques. 2018 Dec;65(6):315-321. doi: 10.2144/btn-2018-0089. Epub 2018 Sep 17.

2.

Age-induced and photoinduced changes in gene expression profiles in facial skin of Caucasian females across 6 decades of age.

Kimball AB, Alora-Palli MB, Tamura M, Mullins LA, Soh C, Binder RL, Houston NA, Conley ED, Tung JY, Annunziata NE, Bascom CC, Isfort RJ, Jarrold BB, Kainkaryam R, Rocchetta HL, Swift DD, Tiesman JP, Toyama K, Xu J, Yan X, Osborne R.

J Am Acad Dermatol. 2018 Jan;78(1):29-39.e7. doi: 10.1016/j.jaad.2017.09.012. Epub 2017 Nov 14.

PMID:
29146147
3.

Grouping 34 Chemicals Based on Mode of Action Using Connectivity Mapping.

De Abrew KN, Kainkaryam RM, Shan YK, Overmann GJ, Settivari RS, Wang X, Xu J, Adams RL, Tiesman JP, Carney EW, Naciff JM, Daston GP.

Toxicol Sci. 2016 Jun;151(2):447-61. doi: 10.1093/toxsci/kfw058. Epub 2016 Mar 29.

PMID:
27026708
4.

Dose- and Time-Dependent Transcriptional Response of Ishikawa Cells Exposed to Genistein.

Naciff JM, Khambatta ZS, Carr GJ, Tiesman JP, Singleton DW, Khan SA, Daston GP.

Toxicol Sci. 2016 May;151(1):71-87. doi: 10.1093/toxsci/kfw024. Epub 2016 Feb 10.

5.

A systems approach to understanding human rhinovirus and influenza virus infection.

Kim TK, Bheda-Malge A, Lin Y, Sreekrishna K, Adams R, Robinson MK, Bascom CC, Tiesman JP, Isfort RJ, Gelinas R.

Virology. 2015 Dec;486:146-57. doi: 10.1016/j.virol.2015.08.014. Epub 2015 Oct 6.

6.

A novel transcriptomics based in vitro method to compare and predict hepatotoxicity based on mode of action.

De Abrew KN, Overmann GJ, Adams RL, Tiesman JP, Dunavent J, Shan YK, Carr GJ, Daston GP, Naciff JM.

Toxicology. 2015 Feb 3;328:29-39. doi: 10.1016/j.tox.2014.11.008. Epub 2014 Dec 2.

PMID:
25475144
7.

Transcriptional profiling of epidermal barrier formation in vitro.

Bachelor M, Binder RL, Cambron RT, Kaczvinsky JR, Spruell R, Wehmeyer KR, Reilman R, Adams R, Tiesman JP, Wang Y, Bascom CC, Isfort RJ, DiColandrea T.

J Dermatol Sci. 2014 Mar;73(3):187-97. doi: 10.1016/j.jdermsci.2013.11.004. Epub 2013 Nov 11.

PMID:
24314759
8.

Dandruff/seborrhoeic dermatitis is characterized by an inflammatory genomic signature and possible immune dysfunction: transcriptional analysis of the condition and treatment effects of zinc pyrithione.

Mills KJ, Hu P, Henry J, Tamura M, Tiesman JP, Xu J.

Br J Dermatol. 2012 Jun;166 Suppl 2:33-40. doi: 10.1111/j.1365-2133.2012.10863.x.

PMID:
22670617
9.

Beyond the blot: cutting edge tools for genomics, proteomics and metabolomics analyses and previous successes.

Kimball AB, Grant RA, Wang F, Osborne R, Tiesman JP.

Br J Dermatol. 2012 Jun;166 Suppl 2:1-8. doi: 10.1111/j.1365-2133.2012.10859.x. Review.

PMID:
22670612
10.

Zinc pyrithione inhibits yeast growth through copper influx and inactivation of iron-sulfur proteins.

Reeder NL, Kaplan J, Xu J, Youngquist RS, Wallace J, Hu P, Juhlin KD, Schwartz JR, Grant RA, Fieno A, Nemeth S, Reichling T, Tiesman JP, Mills T, Steinke M, Wang SL, Saunders CW.

Antimicrob Agents Chemother. 2011 Dec;55(12):5753-60. doi: 10.1128/AAC.00724-11. Epub 2011 Sep 26.

11.

Xenobiotic metabolism gene expression in the EpiDermin vitro 3D human epidermis model compared to human skin.

Hu T, Khambatta ZS, Hayden PJ, Bolmarcich J, Binder RL, Robinson MK, Carr GJ, Tiesman JP, Jarrold BB, Osborne R, Reichling TD, Nemeth ST, Aardema MJ.

Toxicol In Vitro. 2010 Aug;24(5):1450-63. doi: 10.1016/j.tiv.2010.03.013. Epub 2010 Mar 27.

PMID:
20350595
12.

The genomic response of Ishikawa cells to bisphenol A exposure is dose- and time-dependent.

Naciff JM, Khambatta ZS, Reichling TD, Carr GJ, Tiesman JP, Singleton DW, Khan SA, Daston GP.

Toxicology. 2010 Apr 11;270(2-3):137-49. doi: 10.1016/j.tox.2010.02.008. Epub 2010 Feb 17.

PMID:
20170705
13.

Gingival transcriptome patterns during induction and resolution of experimental gingivitis in humans.

Offenbacher S, Barros SP, Paquette DW, Winston JL, Biesbrock AR, Thomason RG, Gibb RD, Fulmer AW, Tiesman JP, Juhlin KD, Wang SL, Reichling TD, Chen KS, Ho B.

J Periodontol. 2009 Dec;80(12):1963-82. doi: 10.1902/jop.2009.080645.

PMID:
19961380
14.
15.

Genomics of skin aging: practical applications.

Weinkle SH, Tiesman JP.

J Drugs Dermatol. 2009 Jul;8(7 Suppl):s3. No abstract available.

PMID:
19623776
16.

The genomic response of a human uterine endometrial adenocarcinoma cell line to 17alpha-ethynyl estradiol.

Naciff JM, Khambatta ZS, Thomason RG, Carr GJ, Tiesman JP, Singleton DW, Khan SA, Daston GP.

Toxicol Sci. 2009 Jan;107(1):40-55. doi: 10.1093/toxsci/kfn219. Epub 2008 Oct 20.

PMID:
18936297
17.

Gene expression profiles during in vivo human rhinovirus infection: insights into the host response.

Proud D, Turner RB, Winther B, Wiehler S, Tiesman JP, Reichling TD, Juhlin KD, Fulmer AW, Ho BY, Walanski AA, Poore CL, Mizoguchi H, Jump L, Moore ML, Zukowski CK, Clymer JW.

Am J Respir Crit Care Med. 2008 Nov 1;178(9):962-8. doi: 10.1164/rccm.200805-670OC. Epub 2008 Jul 24.

PMID:
18658112
18.

Genomic expression changes induced by topical N-acetyl glucosamine in skin equivalent cultures in vitro.

Bissett DL, Farmer T, McPhail S, Reichling T, Tiesman JP, Juhlin KD, Hurley GJ, Robinson MK.

J Cosmet Dermatol. 2007 Dec;6(4):232-8.

PMID:
18047607
19.

Uterine temporal response to acute exposure to 17alpha-ethinyl estradiol in the immature rat.

Naciff JM, Overmann GJ, Torontali SM, Carr GJ, Khambatta ZS, Tiesman JP, Richardson BD, Daston GP.

Toxicol Sci. 2007 Jun;97(2):467-90. Epub 2007 Mar 9.

PMID:
17351261
20.

The ABRF MARG microarray survey 2005: taking the pulse of the microarray field.

Knudtson KL, Auer H, Brooks AI, Griffin C, Grills G, Hester S, Khitrov G, Lilley KS, Massimi A, Tiesman JP, Viale A.

J Biomol Tech. 2006 Apr;17(2):176-86.

21.

Analysis of Affymetrix GeneChip data using amplified RNA.

Cope L, Hartman SM, Göhlmann HW, Tiesman JP, Irizarry RA.

Biotechniques. 2006 Feb;40(2):165-6, 168, 170.

22.

Design of a microsphere-based high-throughput gene expression assay to determine estrogenic potential.

Naciff JM, Richardson BD, Oliver KG, Jump ML, Torontali SM, Juhlin KD, Carr GJ, Paine JR, Tiesman JP, Daston GP.

Environ Health Perspect. 2005 Sep;113(9):1164-71.

23.

Gene expression changes induced in the testis by transplacental exposure to high and low doses of 17{alpha}-ethynyl estradiol, genistein, or bisphenol A.

Naciff JM, Hess KA, Overmann GJ, Torontali SM, Carr GJ, Tiesman JP, Foertsch LM, Richardson BD, Martinez JE, Daston GP.

Toxicol Sci. 2005 Aug;86(2):396-416. Epub 2005 May 18.

PMID:
15901920
24.

Evaluation of the gene expression changes induced by 17-alpha-ethynyl estradiol in the immature uterus/ovaries of the rat using high density oligonucleotide arrays.

Naciff JM, Torontali SM, Overmann GI, Carr GJ, Tiesman JP, Daston GP.

Birth Defects Res B Dev Reprod Toxicol. 2005 Apr;74(2):164-84.

PMID:
15834898
25.

Impact of the phytoestrogen content of laboratory animal feed on the gene expression profile of the reproductive system in the immature female rat.

Naciff JM, Overmann GJ, Torontali SM, Carr GJ, Tiesman JP, Daston GP.

Environ Health Perspect. 2004 Nov;112(15):1519-26.

26.

Identification of a gene expression profile that discriminates indirect-acting genotoxins from direct-acting genotoxins.

Hu T, Gibson DP, Carr GJ, Torontali SM, Tiesman JP, Chaney JG, Aardema MJ.

Mutat Res. 2004 May 18;549(1-2):5-27.

PMID:
15120960
27.

Gene expression profile induced by 17 alpha-ethynyl estradiol in the prepubertal female reproductive system of the rat.

Naciff JM, Overmann GJ, Torontali SM, Carr GJ, Tiesman JP, Richardson BD, Daston GP.

Toxicol Sci. 2003 Apr;72(2):314-30. Epub 2003 Mar 7.

PMID:
12655037
28.

Gene expression profile induced by 17alpha-ethynyl estradiol, bisphenol A, and genistein in the developing female reproductive system of the rat.

Naciff JM, Jump ML, Torontali SM, Carr GJ, Tiesman JP, Overmann GJ, Daston GP.

Toxicol Sci. 2002 Jul;68(1):184-99.

PMID:
12075121
29.

Characterization and cloning of a receptor for BMP-2 and BMP-4 from NIH 3T3 cells.

Koenig BB, Cook JS, Wolsing DH, Ting J, Tiesman JP, Correa PE, Olson CA, Pecquet AL, Ventura F, Grant RA, et al.

Mol Cell Biol. 1994 Sep;14(9):5961-74.

30.

Human keratinocytes are a major source of cutaneous platelet-derived growth factor.

Ansel JC, Tiesman JP, Olerud JE, Krueger JG, Krane JF, Tara DC, Shipley GD, Gilbertson D, Usui ML, Hart CE.

J Clin Invest. 1993 Aug;92(2):671-8.

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