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Items: 1 to 50 of 58

1.

An open challenge to advance probabilistic forecasting for dengue epidemics.

Johansson MA, Apfeldorf KM, Dobson S, Devita J, Buczak AL, Baugher B, Moniz LJ, Bagley T, Babin SM, Guven E, Yamana TK, Shaman J, Moschou T, Lothian N, Lane A, Osborne G, Jiang G, Brooks LC, Farrow DC, Hyun S, Tibshirani RJ, Rosenfeld R, Lessler J, Reich NG, Cummings DAT, Lauer SA, Moore SM, Clapham HE, Lowe R, Bailey TC, García-Díez M, Carvalho MS, Rodó X, Sardar T, Paul R, Ray EL, Sakrejda K, Brown AC, Meng X, Osoba O, Vardavas R, Manheim D, Moore M, Rao DM, Porco TC, Ackley S, Liu F, Worden L, Convertino M, Liu Y, Reddy A, Ortiz E, Rivero J, Brito H, Juarrero A, Johnson LR, Gramacy RB, Cohen JM, Mordecai EA, Murdock CC, Rohr JR, Ryan SJ, Stewart-Ibarra AM, Weikel DP, Jutla A, Khan R, Poultney M, Colwell RR, Rivera-García B, Barker CM, Bell JE, Biggerstaff M, Swerdlow D, Mier-Y-Teran-Romero L, Forshey BM, Trtanj J, Asher J, Clay M, Margolis HS, Hebbeler AM, George D, Chretien JP.

Proc Natl Acad Sci U S A. 2019 Nov 26;116(48):24268-24274. doi: 10.1073/pnas.1909865116. Epub 2019 Nov 11.

2.

Increased T Cell Differentiation and Cytolytic Function in Bangladeshi Compared to American Children.

Wagar LE, Bolen CR, Sigal N, Lopez Angel CJ, Guan L, Kirkpatrick BD, Haque R, Tibshirani RJ, Parsonnet J, Petri WA Jr, Davis MM.

Front Immunol. 2019 Sep 20;10:2239. doi: 10.3389/fimmu.2019.02239. eCollection 2019.

3.

Early detection of unilateral ureteral obstruction by desorption electrospray ionization mass spectrometry.

Banerjee S, Wong AC, Yan X, Wu B, Zhao H, Tibshirani RJ, Zare RN, Brooks JD.

Sci Rep. 2019 Jul 29;9(1):11007. doi: 10.1038/s41598-019-47396-x.

4.

High-dimensional longitudinal classification with the multinomial fused lasso.

Adhikari S, Lecci F, Becker JT, Junker BW, Kuller LH, Lopez OL, Tibshirani RJ.

Stat Med. 2019 May 30;38(12):2184-2205. doi: 10.1002/sim.8100. Epub 2019 Jan 30.

5.

Found In Translation: a machine learning model for mouse-to-human inference.

Normand R, Du W, Briller M, Gaujoux R, Starosvetsky E, Ziv-Kenet A, Shalev-Malul G, Tibshirani RJ, Shen-Orr SS.

Nat Methods. 2018 Dec;15(12):1067-1073. doi: 10.1038/s41592-018-0214-9. Epub 2018 Nov 26.

PMID:
30478323
6.

Analyzing excess risk from matched designs with double controls: author's response.

Redelmeier DA, Tibshirani RJ.

J Clin Epidemiol. 2019 Mar;107:127-128. doi: 10.1016/j.jclinepi.2018.11.009. Epub 2018 Nov 16. No abstract available.

PMID:
30453039
7.

Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions.

Brooks LC, Farrow DC, Hyun S, Tibshirani RJ, Rosenfeld R.

PLoS Comput Biol. 2018 Jun 15;14(6):e1006134. doi: 10.1371/journal.pcbi.1006134. eCollection 2018 Jun.

8.

Reply to Vickers: Pharmacogenetics and progression to neovascular age-related macular degeneration-Evidence supporting practice change.

Vavvas DG, Small KW, Awh C, Zanke BW, Tibshirani RJ, Kustra R.

Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):E5640-E5641. doi: 10.1073/pnas.1804781115. Epub 2018 Jun 7. No abstract available.

9.

Distinguishing malignant from benign microscopic skin lesions using desorption electrospray ionization mass spectrometry imaging.

Margulis K, Chiou AS, Aasi SZ, Tibshirani RJ, Tang JY, Zare RN.

Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6347-6352. doi: 10.1073/pnas.1803733115. Epub 2018 Jun 4.

10.

Results from the second year of a collaborative effort to forecast influenza seasons in the United States.

Biggerstaff M, Johansson M, Alper D, Brooks LC, Chakraborty P, Farrow DC, Hyun S, Kandula S, McGowan C, Ramakrishnan N, Rosenfeld R, Shaman J, Tibshirani R, Tibshirani RJ, Vespignani A, Yang W, Zhang Q, Reed C.

Epidemics. 2018 Sep;24:26-33. doi: 10.1016/j.epidem.2018.02.003. Epub 2018 Feb 24.

11.

Methods for analyzing matched designs with double controls: excess risk is easily estimated and misinterpreted when evaluating traffic deaths.

Redelmeier DA, Tibshirani RJ.

J Clin Epidemiol. 2018 Jun;98:117-122. doi: 10.1016/j.jclinepi.2018.02.005. Epub 2018 Feb 13.

PMID:
29452220
12.

CFH and ARMS2 genetic risk determines progression to neovascular age-related macular degeneration after antioxidant and zinc supplementation.

Vavvas DG, Small KW, Awh CC, Zanke BW, Tibshirani RJ, Kustra R.

Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E696-E704. doi: 10.1073/pnas.1718059115. Epub 2018 Jan 8.

13.

KLHL6 Is Preferentially Expressed in Germinal Center-Derived B-Cell Lymphomas.

Kunder CA, Roncador G, Advani RH, Gualco G, Bacchi CE, Sabile JM, Lossos IS, Nie K, Tibshirani RJ, Green MR, Alizadeh AA, Natkunam Y.

Am J Clin Pathol. 2017 Nov 20;148(6):465-476. doi: 10.1093/ajcp/aqx099.

14.

Big data modeling to predict platelet usage and minimize wastage in a tertiary care system.

Guan L, Tian X, Gombar S, Zemek AJ, Krishnan G, Scott R, Narasimhan B, Tibshirani RJ, Pham TD.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11368-11373. doi: 10.1073/pnas.1714097114. Epub 2017 Oct 9.

15.

Diagnosis of prostate cancer by desorption electrospray ionization mass spectrometric imaging of small metabolites and lipids.

Banerjee S, Zare RN, Tibshirani RJ, Kunder CA, Nolley R, Fan R, Brooks JD, Sonn GA.

Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):3334-3339. doi: 10.1073/pnas.1700677114. Epub 2017 Mar 14.

16.

A human judgment approach to epidemiological forecasting.

Farrow DC, Brooks LC, Hyun S, Tibshirani RJ, Burke DS, Rosenfeld R.

PLoS Comput Biol. 2017 Mar 10;13(3):e1005248. doi: 10.1371/journal.pcbi.1005248. eCollection 2017 Mar.

17.

High-dimensional regression adjustments in randomized experiments.

Wager S, Du W, Taylor J, Tibshirani RJ.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):12673-12678. doi: 10.1073/pnas.1614732113. Epub 2016 Oct 25.

18.

A simple method for analyzing matched designs with double controls: McNemar's test can be extended.

Redelmeier DA, Tibshirani RJ.

J Clin Epidemiol. 2017 Jan;81:51-55.e2. doi: 10.1016/j.jclinepi.2016.08.006. Epub 2016 Aug 24.

PMID:
27565976
19.

Successful immunotherapy induces previously unidentified allergen-specific CD4+ T-cell subsets.

Ryan JF, Hovde R, Glanville J, Lyu SC, Ji X, Gupta S, Tibshirani RJ, Jay DC, Boyd SD, Chinthrajah RS, Davis MM, Galli SJ, Maecker HT, Nadeau KC.

Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):E1286-95. doi: 10.1073/pnas.1520180113. Epub 2016 Jan 25.

20.

The Radiogenomic Risk Score: Construction of a Prognostic Quantitative, Noninvasive Image-based Molecular Assay for Renal Cell Carcinoma.

Jamshidi N, Jonasch E, Zapala M, Korn RL, Aganovic L, Zhao H, Tumkur Sitaram R, Tibshirani RJ, Banerjee S, Brooks JD, Ljungberg B, Kuo MD.

Radiology. 2015 Oct;277(1):114-23. doi: 10.1148/radiol.2015150800. Epub 2015 Aug 19.

PMID:
26402495
21.

Flexible Modeling of Epidemics with an Empirical Bayes Framework.

Brooks LC, Farrow DC, Hyun S, Tibshirani RJ, Rosenfeld R.

PLoS Comput Biol. 2015 Aug 28;11(8):e1004382. doi: 10.1371/journal.pcbi.1004382. eCollection 2015 Aug.

22.

Statistical learning and selective inference.

Taylor J, Tibshirani RJ.

Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7629-34. doi: 10.1073/pnas.1507583112.

23.

Fibromyalgia and the Risk of a Subsequent Motor Vehicle Crash.

Redelmeier DA, Zung JD, Thiruchelvam D, Tibshirani RJ.

J Rheumatol. 2015 Aug;42(8):1502-10. doi: 10.3899/jrheum.141315. Epub 2015 May 15.

PMID:
25979716
24.

A SIGNIFICANCE TEST FOR THE LASSO.

Lockhart R, Taylor J, Tibshirani RJ, Tibshirani R.

Ann Stat. 2014 Apr;42(2):413-468.

25.

Alteration of the lipid profile in lymphomas induced by MYC overexpression.

Eberlin LS, Gabay M, Fan AC, Gouw AM, Tibshirani RJ, Felsher DW, Zare RN.

Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):10450-5. doi: 10.1073/pnas.1409778111. Epub 2014 Jul 3.

26.

Automated identification of stratifying signatures in cellular subpopulations.

Bruggner RV, Bodenmiller B, Dill DL, Tibshirani RJ, Nolan GP.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):E2770-7. doi: 10.1073/pnas.1408792111. Epub 2014 Jun 16.

27.

LMO2 and BCL6 are associated with improved survival in primary central nervous system lymphoma.

Lossos C, Bayraktar S, Weinzierl E, Younes SF, Hosein PJ, Tibshirani RJ, Sutton Posthumus J, DeAngelis LM, Raizer J, Schiff D, Abrey L, Natkunam Y, Lossos IS.

Br J Haematol. 2014 Jun;165(5):640-8. doi: 10.1111/bjh.12801. Epub 2014 Feb 26. Review.

28.

Molecular assessment of surgical-resection margins of gastric cancer by mass-spectrometric imaging.

Eberlin LS, Tibshirani RJ, Zhang J, Longacre TA, Berry GJ, Bingham DB, Norton JA, Zare RN, Poultsides GA.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2436-41. doi: 10.1073/pnas.1400274111. Epub 2014 Feb 3.

29.

Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination.

Furman D, Hejblum BP, Simon N, Jojic V, Dekker CL, Thiébaut R, Tibshirani RJ, Davis MM.

Proc Natl Acad Sci U S A. 2014 Jan 14;111(2):869-74. doi: 10.1073/pnas.1321060111. Epub 2013 Dec 23.

30.

Identification of gene microarray expression profiles in patients with chronic graft-versus-host disease following allogeneic hematopoietic cell transplantation.

Kohrt HE, Tian L, Li L, Alizadeh AA, Hsieh S, Tibshirani RJ, Strober S, Sarwal M, Lowsky R.

Clin Immunol. 2013 Jul;148(1):124-35. doi: 10.1016/j.clim.2013.04.013. Epub 2013 May 1.

PMID:
23685278
31.

Physicians' warnings for unfit drivers and risk of road crashes.

Redelmeier DA, Yarnell CJ, Tibshirani RJ.

N Engl J Med. 2013 Jan 3;368(1):87-8. doi: 10.1056/NEJMc1212928. No abstract available.

PMID:
23281992
32.

Sparse estimation of a covariance matrix.

Bien J, Tibshirani RJ.

Biometrika. 2011 Dec;98(4):807-820.

33.

Physicians' warnings for unfit drivers and the risk of trauma from road crashes.

Redelmeier DA, Yarnell CJ, Thiruchelvam D, Tibshirani RJ.

N Engl J Med. 2012 Sep 27;367(13):1228-36.

34.

Autoantibody epitope spreading in the pre-clinical phase predicts progression to rheumatoid arthritis.

Sokolove J, Bromberg R, Deane KD, Lahey LJ, Derber LA, Chandra PE, Edison JD, Gilliland WR, Tibshirani RJ, Norris JM, Holers VM, Robinson WH.

PLoS One. 2012;7(5):e35296. doi: 10.1371/journal.pone.0035296. Epub 2012 May 25. Erratum in: PLoS One.doi: 10.1371/annotation/2e462817-ab93-4d78-95a4-1d8b9d172971.

35.

Strong rules for discarding predictors in lasso-type problems.

Tibshirani R, Bien J, Friedman J, Hastie T, Simon N, Taylor J, Tibshirani RJ.

J R Stat Soc Series B Stat Methodol. 2012 Mar;74(2):245-266.

36.

In situ vaccination against mycosis fungoides by intratumoral injection of a TLR9 agonist combined with radiation: a phase 1/2 study.

Kim YH, Gratzinger D, Harrison C, Brody JD, Czerwinski DK, Ai WZ, Morales A, Abdulla F, Xing L, Navi D, Tibshirani RJ, Advani RH, Lingala B, Shah S, Hoppe RT, Levy R.

Blood. 2012 Jan 12;119(2):355-63. doi: 10.1182/blood-2011-05-355222. Epub 2011 Nov 1.

37.

Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment.

Alizadeh AA, Gentles AJ, Alencar AJ, Liu CL, Kohrt HE, Houot R, Goldstein MJ, Zhao S, Natkunam Y, Advani RH, Gascoyne RD, Briones J, Tibshirani RJ, Myklebust JH, Plevritis SK, Lossos IS, Levy R.

Blood. 2011 Aug 4;118(5):1350-8. doi: 10.1182/blood-2011-03-345272. Epub 2011 Jun 13.

38.

Predicting patient survival from longitudinal gene expression.

Zhang Y, Tibshirani RJ, Davis RW.

Stat Appl Genet Mol Biol. 2010;9:Article41. doi: 10.2202/1544-6115.1617. Epub 2010 Nov 22.

39.

In situ vaccination with a TLR9 agonist induces systemic lymphoma regression: a phase I/II study.

Brody JD, Ai WZ, Czerwinski DK, Torchia JA, Levy M, Advani RH, Kim YH, Hoppe RT, Knox SJ, Shin LK, Wapnir I, Tibshirani RJ, Levy R.

J Clin Oncol. 2010 Oct 1;28(28):4324-32. doi: 10.1200/JCO.2010.28.9793. Epub 2010 Aug 9.

40.

Lymphoma cell VEGFR2 expression detected by immunohistochemistry predicts poor overall survival in diffuse large B cell lymphoma treated with immunochemotherapy (R-CHOP).

Gratzinger D, Advani R, Zhao S, Talreja N, Tibshirani RJ, Shyam R, Horning S, Sehn LH, Farinha P, Briones J, Lossos IS, Gascoyne RD, Natkunam Y.

Br J Haematol. 2010 Jan;148(2):235-44. doi: 10.1111/j.1365-2141.2009.07942.x. Epub 2009 Oct 11.

41.

Extensions of sparse canonical correlation analysis with applications to genomic data.

Witten DM, Tibshirani RJ.

Stat Appl Genet Mol Biol. 2009;8:Article28. doi: 10.2202/1544-6115.1470. Epub 2009 Jun 9. Review.

42.

Blood autoantibody and cytokine profiles predict response to anti-tumor necrosis factor therapy in rheumatoid arthritis.

Hueber W, Tomooka BH, Batliwalla F, Li W, Monach PA, Tibshirani RJ, Van Vollenhoven RF, Lampa J, Saito K, Tanaka Y, Genovese MC, Klareskog L, Gregersen PK, Robinson WH.

Arthritis Res Ther. 2009;11(3):R76. doi: 10.1186/ar2706. Epub 2009 May 21.

43.

Univariate shrinkage in the cox model for high dimensional data.

Tibshirani RJ.

Stat Appl Genet Mol Biol. 2009;8:Article21. doi: 10.2202/1544-6115.1438. Epub 2009 Apr 14.

44.

Driving fatalities on US presidential election days.

Redelmeier DA, Tibshirani RJ.

JAMA. 2008 Oct 1;300(13):1518-20. doi: 10.1001/jama.300.13.1518. No abstract available.

PMID:
18827208
45.

Polymorphisms in hypoxia inducible factor 1 and the initial clinical presentation of coronary disease.

Hlatky MA, Quertermous T, Boothroyd DB, Priest JR, Glassford AJ, Myers RM, Fortmann SP, Iribarren C, Tabor HK, Assimes TL, Tibshirani RJ, Go AS.

Am Heart J. 2007 Dec;154(6):1035-42. Epub 2007 Sep 18.

PMID:
18035072
46.

Prognostic significance of VEGF, VEGF receptors, and microvessel density in diffuse large B cell lymphoma treated with anthracycline-based chemotherapy.

Gratzinger D, Zhao S, Tibshirani RJ, Hsi ED, Hans CP, Pohlman B, Bast M, Avigdor A, Schiby G, Nagler A, Byrne GE Jr, Lossos IS, Natkunam Y.

Lab Invest. 2008 Jan;88(1):38-47. Epub 2007 Nov 12.

47.

Microvessel density and expression of vascular endothelial growth factor and its receptors in diffuse large B-cell lymphoma subtypes.

Gratzinger D, Zhao S, Marinelli RJ, Kapp AV, Tibshirani RJ, Hammer AS, Hamilton-Dutoit S, Natkunam Y.

Am J Pathol. 2007 Apr;170(4):1362-9.

48.

Pre-validation and inference in microarrays.

Tibshirani RJ, Efron B.

Stat Appl Genet Mol Biol. 2002;1:Article1. Epub 2002 Aug 22.

PMID:
16646777
49.

Changes of gene expression in gastric preneoplasia following Helicobacter pylori eradication therapy.

Tsai CJ, Herrera-Goepfert R, Tibshirani RJ, Yang S, Mohar A, Guarner J, Parsonnet J.

Cancer Epidemiol Biomarkers Prev. 2006 Feb;15(2):272-80.

50.

Traffic-law enforcement and risk of death from motor-vehicle crashes: case-crossover study.

Redelmeier DA, Tibshirani RJ, Evans L.

Lancet. 2003 Jun 28;361(9376):2177-82.

PMID:
12842370

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