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Items: 20

1.

Myg1 exonuclease couples the nuclear and mitochondrial translational programs through RNA processing.

Grover R, Burse SA, Shankrit S, Aggarwal A, Kirty K, Narta K, Srivastav R, Ray AK, Malik G, Vats A, Motiani RK, Thukral L, Roy SS, Bhattacharya S, Sharma R, Natarajan K, Mukerji M, Pandey R, Gokhale RS, Natarajan VT.

Nucleic Acids Res. 2019 Jun 20;47(11):5852-5866. doi: 10.1093/nar/gkz371.

2.

Human LC3 and GABARAP subfamily members achieve functional specificity via specific structural modulations.

Jatana N, Ascher DB, Pires DEV, Gokhale RS, Thukral L.

Autophagy. 2019 Apr 14:1-17. doi: 10.1080/15548627.2019.1606636. [Epub ahead of print]

PMID:
30982432
3.

Distinct Intramolecular Hydrogen Bonding Dictates Antimicrobial Action of Membrane-Targeting Amphiphiles.

Mitra M, Asad M, Kumar S, Yadav K, Chaudhary S, Bhavesh NS, Khalid S, Thukral L, Bajaj A.

J Phys Chem Lett. 2019 Feb 21;10(4):754-760. doi: 10.1021/acs.jpclett.8b03508. Epub 2019 Feb 5.

PMID:
30694679
4.

Deciphering the Role of Intramolecular Networking in Cholic Acid-Peptide Conjugates on the Lipopolysaccharide Surface in Combating Gram-Negative Bacterial Infections.

Yadav K, Kumar S, Mishra D, Asad M, Mitra M, Yavvari PS, Gupta S, Vedantham M, Ranga P, Komalla V, Pal S, Sharma P, Kapil A, Singh A, Singh N, Srivastava A, Thukral L, Bajaj A.

J Med Chem. 2019 Feb 28;62(4):1875-1886. doi: 10.1021/acs.jmedchem.8b01357. Epub 2019 Feb 11.

PMID:
30688460
5.

Specific Cholesterol Binding Drives Drastic Structural Alterations in Apolipoprotein A1.

Ray A, Ghosh A, Chakraborty R, Upadhyay SK, Maiti S, Sengupta S, Thukral L.

J Phys Chem Lett. 2018 Oct 18;9(20):6060-6065. doi: 10.1021/acs.jpclett.8b02042. Epub 2018 Oct 4.

PMID:
30256643
6.

Probing molecular forces in multi-component physiological membranes.

Ray A, Gräter F, Thukral L.

Phys Chem Chem Phys. 2018 Jan 24;20(4):2155-2161. doi: 10.1039/c7cp05981g.

PMID:
29177331
7.

A conserved degron containing an amphipathic helix regulates the cholesterol-mediated turnover of human squalene monooxygenase, a rate-limiting enzyme in cholesterol synthesis.

Chua NK, Howe V, Jatana N, Thukral L, Brown AJ.

J Biol Chem. 2017 Dec 8;292(49):19959-19973. doi: 10.1074/jbc.M117.794230. Epub 2017 Sep 27.

8.

Mapping architectural and transcriptional alterations in non-lesional and lesional epidermis in vitiligo.

Singh A, Gotherwal V, Junni P, Vijayan V, Tiwari M, Ganju P, Kumar A, Sharma P, Fatima T, Gupta A, Holla A, Kar HK, Khanna S, Thukral L, Malik G, Natarajan K, Gadgil CJ, Lahesmaa R, Natarajan VT, Rani R, Gokhale RS.

Sci Rep. 2017 Aug 29;7(1):9860. doi: 10.1038/s41598-017-10253-w.

9.

Classical autophagy proteins LC3B and ATG4B facilitate melanosome movement on cytoskeletal tracks.

Ramkumar A, Murthy D, Raja DA, Singh A, Krishnan A, Khanna S, Vats A, Thukral L, Sharma P, Sivasubbu S, Rani R, Natarajan VT, Gokhale RS.

Autophagy. 2017 Aug 3;13(8):1331-1347. doi: 10.1080/15548627.2017.1327509. Epub 2017 Jun 9.

10.

Lipidated proteins: Spotlight on protein-membrane binding interfaces.

Ray A, Jatana N, Thukral L.

Prog Biophys Mol Biol. 2017 Sep;128:74-84. doi: 10.1016/j.pbiomolbio.2017.01.002. Epub 2017 Feb 3. Review.

PMID:
28167047
11.

Structural signatures of DRD4 mutants revealed using molecular dynamics simulations: Implications for drug targeting.

Jatana N, Thukral L, Latha N.

J Mol Model. 2016 Jan;22(1):14. doi: 10.1007/s00894-015-2868-x. Epub 2015 Dec 17.

PMID:
26680992
12.

Unsaturated Lipid Assimilation by Mycobacteria Requires Auxiliary cis-trans Enoyl CoA Isomerase.

Srivastava S, Chaudhary S, Thukral L, Shi C, Gupta RD, Gupta R, Priyadarshan K, Vats A, Haque AS, Sankaranarayanan R, Natarajan VT, Sharma R, Aldrich CC, Gokhale RS.

Chem Biol. 2015 Dec 17;22(12):1577-87. doi: 10.1016/j.chembiol.2015.10.009. Epub 2015 Nov 25.

13.

The Molecular Mechanism Underlying Recruitment and Insertion of Lipid-Anchored LC3 Protein into Membranes.

Thukral L, Sengupta D, Ramkumar A, Murthy D, Agrawal N, Gokhale RS.

Biophys J. 2015 Nov 17;109(10):2067-78. doi: 10.1016/j.bpj.2015.09.022.

14.

Decoding Structural Properties of a Partially Unfolded Protein Substrate: En Route to Chaperone Binding.

Nagpal S, Tiwari S, Mapa K, Thukral L.

PLoS Comput Biol. 2015 Sep 22;11(9):e1004496. doi: 10.1371/journal.pcbi.1004496. eCollection 2015.

15.

β-Structure within the Denatured State of the Helical Protein Domain BBL.

Thukral L, Schwarze S, Daidone I, Neuweiler H.

J Mol Biol. 2015 Sep 25;427(19):3166-76. doi: 10.1016/j.jmb.2015.08.007. Epub 2015 Aug 14.

PMID:
26281710
16.

Monitoring the folding kinetics of a β-hairpin by time-resolved IR spectroscopy in silico.

Daidone I, Thukral L, Smith JC, Amadei A.

J Phys Chem B. 2015 Apr 9;119(14):4849-56. doi: 10.1021/acs.jpcb.5b01477. Epub 2015 Mar 31.

PMID:
25777154
17.

Structure and dynamics of DRD4 bound to an agonist and an antagonist using in silico approaches.

Jatana N, Thukral L, Latha N.

Proteins. 2015 May;83(5):867-80. doi: 10.1002/prot.24716. Epub 2015 Mar 26.

PMID:
25371112
18.

Structured pathway across the transition state for peptide folding revealed by molecular dynamics simulations.

Thukral L, Daidone I, Smith JC.

PLoS Comput Biol. 2011 Sep;7(9):e1002137. doi: 10.1371/journal.pcbi.1002137. Epub 2011 Sep 8.

19.

Common folding mechanism of a beta-hairpin peptide via non-native turn formation revealed by unbiased molecular dynamics simulations.

Thukral L, Smith JC, Daidone I.

J Am Chem Soc. 2009 Dec 23;131(50):18147-52. doi: 10.1021/ja9064365.

PMID:
19919102
20.

ProRegIn: a regularity index for the selection of native-like tertiary structures of proteins.

Thukral L, Shenoy SR, Bhushan K, Jayaram B.

J Biosci. 2007 Jan;32(1):71-81. Erratum in: J Biosci. 2007 Jun;32(4):805.

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