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Items: 44

1.

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico "Dead Zone".

Thrash JC, Baker BJ, Seitz KW, Temperton B, Campbell LG, Rabalais NN, Henrissat B, Mason OU.

Microbiol Resour Announc. 2018 Sep 6;7(9). pii: e01033-18. doi: 10.1128/MRA.01033-18. eCollection 2018 Sep.

2.

Second Correction for Henson et al., "Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico".

Henson MW, Pitre DM, Weckhorst JL, Lanclos VC, Webber AT, Thrash JC.

mSphere. 2018 Aug 15;3(4). pii: e00415-18. doi: 10.1128/mSphere.00415-18. No abstract available.

3.

Cultivation and genomics of the first freshwater SAR11 (LD12) isolate.

Henson MW, Lanclos VC, Faircloth BC, Thrash JC.

ISME J. 2018 Jun;12(7):1846-1860. doi: 10.1038/s41396-018-0092-2. Epub 2018 Mar 29.

4.

Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone".

Thrash JC, Seitz KW, Baker BJ, Temperton B, Gillies LE, Rabalais NN, Henrissat B, Mason OU.

MBio. 2017 Sep 12;8(5). pii: e01017-17. doi: 10.1128/mBio.01017-17.

5.

Draft Genome Sequence of Strain LSUCC0135, an Early Diverging Member of the Order Methylophilales in the Phylum Betaproteobacteria.

Lanclos VC, Henson MW, Pitre DM, Thrash JC.

Genome Announc. 2016 Nov 3;4(6). pii: e01231-16. doi: 10.1128/genomeA.01231-16.

6.

Corrigendum: The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, Davie-Martin CL, Halsey KH, Giovannoni SJ.

Nat Microbiol. 2016 Oct 3;1(11):16210. doi: 10.1038/nmicrobiol.2016.210. No abstract available.

PMID:
27694837
7.

The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, Davie-Martin CL, Halsey KH, Giovannoni SJ.

Nat Microbiol. 2016 May 16;1(8):16065. doi: 10.1038/nmicrobiol.2016.65. Erratum in: Nat Microbiol. 2016 Oct 03;1(11):16210.

PMID:
27573103
8.

Correction for Henson et al., Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico.

Henson MW, Pitre DM, Weckhorst JL, Lanclos VC, Webber AT, Thrash JC.

mSphere. 2016 Jun 1;1(3). pii: e00124-16. doi: 10.1128/mSphere.00124-16. eCollection 2016 May-Jun.

9.

Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico.

Henson MW, Pitre DM, Weckhorst JL, Lanclos VC, Webber AT, Thrash JC.

mSphere. 2016 Apr 27;1(2). pii: e00028-16. doi: 10.1128/mSphere.00028-16. eCollection 2016 Mar-Apr. Erratum in: mSphere. 2016 May-Jun;1(3). pii: e00124-16. doi: 10.1128/mSphere.00124-16. mSphere. 2018 Aug 15;3(4):.

10.

Status of the Archaeal and Bacterial Census: an Update.

Schloss PD, Girard RA, Martin T, Edwards J, Thrash JC.

MBio. 2016 May 17;7(3). pii: e00201-16. doi: 10.1128/mBio.00201-16.

11.

Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure.

Learman DR, Henson MW, Thrash JC, Temperton B, Brannock PM, Santos SR, Mahon AR, Halanych KM.

Front Microbiol. 2016 Mar 23;7:284. doi: 10.3389/fmicb.2016.00284. eCollection 2016.

12.

Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies.

Hogle SL, Thrash JC, Dupont CL, Barbeau KA.

Appl Environ Microbiol. 2016 Jan 4;82(5):1613-1624. doi: 10.1128/AEM.03128-15.

13.

SAR11 lipid renovation in response to phosphate starvation.

Carini P, Van Mooy BA, Thrash JC, White A, Zhao Y, Campbell EO, Fredricks HF, Giovannoni SJ.

Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7767-72. doi: 10.1073/pnas.1505034112. Epub 2015 Jun 8.

14.

Archaeal enrichment in the hypoxic zone in the northern Gulf of Mexico.

Gillies LE, Thrash JC, deRada S, Rabalais NN, Mason OU.

Environ Microbiol. 2015 Oct;17(10):3847-56. doi: 10.1111/1462-2920.12853. Epub 2015 Apr 27.

PMID:
25818237
15.

Discovery of a SAR11 growth requirement for thiamin's pyrimidine precursor and its distribution in the Sargasso Sea.

Carini P, Campbell EO, Morré J, Sañudo-Wilhelmy SA, Thrash JC, Bennett SE, Temperton B, Begley T, Giovannoni SJ.

ISME J. 2014 Aug;8(8):1727-38. doi: 10.1038/ismej.2014.61. Epub 2014 Apr 29.

16.

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ.

ISME J. 2014 Jul;8(7):1440-51. doi: 10.1038/ismej.2013.243. Epub 2014 Jan 23.

17.

New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability.

Ferla MP, Thrash JC, Giovannoni SJ, Patrick WM.

PLoS One. 2013 Dec 11;8(12):e83383. doi: 10.1371/journal.pone.0083383. eCollection 2013.

18.

Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium.

Smith DP, Thrash JC, Nicora CD, Lipton MS, Burnum-Johnson KE, Carini P, Smith RD, Giovannoni SJ.

MBio. 2013 Nov 26;4(6):e00133-12. doi: 10.1128/mBio.00133-12.

19.

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.

Vergin KL, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ.

ISME J. 2013 Jul;7(7):1322-32. doi: 10.1038/ismej.2013.32. Epub 2013 Mar 7.

20.

Abundant SAR11 viruses in the ocean.

Zhao Y, Temperton B, Thrash JC, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ.

Nature. 2013 Feb 21;494(7437):357-60. doi: 10.1038/nature11921. Epub 2013 Feb 13.

PMID:
23407494
21.

Streamlining and core genome conservation among highly divergent members of the SAR11 clade.

Grote J, Thrash JC, Huggett MJ, Landry ZC, Carini P, Giovannoni SJ, Rappé MS.

MBio. 2012 Sep 18;3(5). pii: e00252-12. doi: 10.1128/mBio.00252-12. Print 2012.

22.

Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade.

Thrash JC, Boyd A, Huggett MJ, Grote J, Carini P, Yoder RJ, Robbertse B, Spatafora JW, Rappé MS, Giovannoni SJ.

Sci Rep. 2011;1:13. doi: 10.1038/srep00013. Epub 2011 Jun 14.

23.

Evidence for direct electron transfer by a gram-positive bacterium isolated from a microbial fuel cell.

Wrighton KC, Thrash JC, Melnyk RA, Bigi JP, Byrne-Bailey KG, Remis JP, Schichnes D, Auer M, Chang CJ, Coates JD.

Appl Environ Microbiol. 2011 Nov;77(21):7633-9. doi: 10.1128/AEM.05365-11. Epub 2011 Sep 9.

24.

One carbon metabolism in SAR11 pelagic marine bacteria.

Sun J, Steindler L, Thrash JC, Halsey KH, Smith DP, Carter AE, Landry ZC, Giovannoni SJ.

PLoS One. 2011;6(8):e23973. doi: 10.1371/journal.pone.0023973. Epub 2011 Aug 23.

25.

Humic acid-oxidizing, nitrate-reducing bacteria in agricultural soils.

Van Trump JI, Wrighton KC, Thrash JC, Weber KA, Andersen GL, Coates JD.

MBio. 2011 Jul 12;2(4):e00044-11. doi: 10.1128/mBio.00044-11. Print 2011.

26.

Environmental and taxonomic bacterial diversity of anaerobic uranium(IV) bio-oxidation.

Weber KA, Thrash JC, Van Trump JI, Achenbach LA, Coates JD.

Appl Environ Microbiol. 2011 Jul;77(13):4693-6. doi: 10.1128/AEM.02539-10. Epub 2011 May 13.

27.

Genome sequence of the Marine Janibacter Sp. Strain HTCC2649.

Thrash JC, Cho JC, Bertagnolli AD, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2011 Jan;193(2):584-5. doi: 10.1128/JB.01298-10. Epub 2010 Nov 12.

28.

Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.

Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Oct;192(20):5552-3. doi: 10.1128/JB.00873-10. Epub 2010 Aug 20.

29.

Dual induction of TREM2 and tolerance-related transcript, Tmem176b, in amyloid transgenic mice: implications for vaccine-based therapies for Alzheimer's disease.

Melchior B, Garcia AE, Hsiung BK, Lo KM, Doose JM, Thrash JC, Stalder AK, Staufenbiel M, Neumann H, Carson MJ.

ASN Neuro. 2010 Jul 12;2(3):e00037. doi: 10.1042/AN20100010.

30.

Magnetospirillum bellicus sp. nov., a novel dissimilatory perchlorate-reducing alphaproteobacterium isolated from a bioelectrical reactor.

Thrash JC, Ahmadi S, Torok T, Coates JD.

Appl Environ Microbiol. 2010 Jul;76(14):4730-7. doi: 10.1128/AEM.00015-10. Epub 2010 May 21.

31.

Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria.

Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Jul;192(14):3842-3. doi: 10.1128/JB.00511-10. Epub 2010 May 14.

32.

Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015.

Thrash JC, Stingl U, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Jul;192(14):3838-9. doi: 10.1128/JB.00510-10. Epub 2010 May 14.

33.

Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta).

Thrash JC, Cho JC, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Jul;192(13):3549-50. doi: 10.1128/JB.00412-10. Epub 2010 Apr 23.

34.

Genome sequence of Lentisphaera araneosa HTCC2155T, the type species of the order Lentisphaerales in the phylum Lentisphaerae.

Thrash JC, Cho JC, Vergin KL, Morris RM, Giovannoni SJ.

J Bacteriol. 2010 Jun;192(11):2938-9. doi: 10.1128/JB.00208-10. Epub 2010 Apr 2.

35.

Description of the novel perchlorate-reducing bacteria Dechlorobacter hydrogenophilus gen. nov., sp. nov.and Propionivibrio militaris, sp. nov.

Thrash JC, Pollock J, Torok T, Coates JD.

Appl Microbiol Biotechnol. 2010 Mar;86(1):335-43. doi: 10.1007/s00253-009-2336-6.

36.

Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.

Weber KA, Hedrick DB, Peacock AD, Thrash JC, White DC, Achenbach LA, Coates JD.

Appl Microbiol Biotechnol. 2009 Jun;83(3):555-65. doi: 10.1007/s00253-009-1934-7. Epub 2009 Mar 31.

PMID:
19333599
37.

Review: Direct and indirect electrical stimulation of microbial metabolism.

Thrash JC, Coates JD.

Environ Sci Technol. 2008 Jun 1;42(11):3921-31. Review.

PMID:
18589946
38.

Developmental regulation of TREM2 and DAP12 expression in the murine CNS: implications for Nasu-Hakola disease.

Thrash JC, Torbett BE, Carson MJ.

Neurochem Res. 2009 Jan;34(1):38-45. doi: 10.1007/s11064-008-9657-1. Epub 2008 Apr 11.

39.

Induction of Golli-MBP expression in CNS macrophages during acute LPS-induced CNS inflammation and experimental autoimmune encephalomyelitis (EAE).

Papenfuss TL, Thrash JC, Danielson PE, Foye PE, Hllbrush BS, Sutcliffe JG, Whitacre CC, Carson MJ.

ScientificWorldJournal. 2007 Nov 2;7:112-20.

40.

Lymphotoxin beta receptor (Lt betaR): dual roles in demyelination and remyelination and successful therapeutic intervention using Lt betaR-Ig protein.

Plant SR, Iocca HA, Wang Y, Thrash JC, O'Connor BP, Arnett HA, Fu YX, Carson MJ, Ting JP.

J Neurosci. 2007 Jul 11;27(28):7429-37.

41.

Electrochemical stimulation of microbial perchlorate reduction.

Thrash JC, Van Trump JI, Weber KA, Miller E, Achenbach LA, Coates JD.

Environ Sci Technol. 2007 Mar 1;41(5):1740-6.

PMID:
17396669
42.
43.

Upregulation of the stress-associated gene p8 in mouse models of demyelination and in multiple sclerosis tissues.

Plant SR, Wang Y, Vasseur S, Thrash JC, McMahon EJ, Bergstralh DT, Arnett HA, Miller SD, Carson MJ, Iovanna JL, Ting JP.

Glia. 2006 Apr 1;53(5):529-37.

44.

Analysis of microglial gene expression: identifying targets for CNS neurodegenerative and autoimmune disease.

Carson MJ, Thrash JC, Lo D.

Am J Pharmacogenomics. 2004;4(5):321-30. Review.

PMID:
15462610

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