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A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome.

Whidbey C, Sadler NC, Nair RN, Volk RF, DeLeon AJ, Bramer LM, Fansler SJ, Hansen JR, Shukla AK, Jansson JK, Thrall BD, Wright AT.

J Am Chem Soc. 2019 Jan 9;141(1):42-47. doi: 10.1021/jacs.8b09668. Epub 2018 Dec 17.


All that is silver is not toxic: silver ion and particle kinetics reveals the role of silver ion aging and dosimetry on the toxicity of silver nanoparticles.

Smith JN, Thomas DG, Jolley H, Kodali VK, Littke MH, Munusamy P, Baer DR, Gaffrey MJ, Thrall BD, Teeguarden JG.

Part Fibre Toxicol. 2018 Dec 5;15(1):47. doi: 10.1186/s12989-018-0283-z.


Mass spectrometry-based proteomics for system-level characterization of biological responses to engineered nanomaterials.

Zhang T, Gaffrey MJ, Thrall BD, Qian WJ.

Anal Bioanal Chem. 2018 Sep;410(24):6067-6077. doi: 10.1007/s00216-018-1168-6. Epub 2018 Jun 8. Review.


ISD3: a particokinetic model for predicting the combined effects of particle sedimentation, diffusion and dissolution on cellular dosimetry for in vitro systems.

Thomas DG, Smith JN, Thrall BD, Baer DR, Jolley H, Munusamy P, Kodali V, Demokritou P, Cohen J, Teeguarden JG.

Part Fibre Toxicol. 2018 Jan 25;15(1):6. doi: 10.1186/s12989-018-0243-7.


Global long-range transport and lung cancer risk from polycyclic aromatic hydrocarbons shielded by coatings of organic aerosol.

Shrivastava M, Lou S, Zelenyuk A, Easter RC, Corley RA, Thrall BD, Rasch PJ, Fast JD, Massey Simonich SL, Shen H, Tao S.

Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):1246-1251. doi: 10.1073/pnas.1618475114. Epub 2017 Jan 23. Erratum in: Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):E2263. Lou, Silja [corrected to Lou, Sijia].


Provenance information as a tool for addressing engineered nanoparticle reproducibility challenges.

Baer DR, Munusamy P, Thrall BD.

Biointerphases. 2016 Oct 19;11(4):04B401.


Quantitative Profiling of Protein S-Glutathionylation Reveals Redox-Dependent Regulation of Macrophage Function during Nanoparticle-Induced Oxidative Stress.

Duan J, Kodali VK, Gaffrey MJ, Guo J, Chu RK, Camp DG, Smith RD, Thrall BD, Qian WJ.

ACS Nano. 2016 Jan 26;10(1):524-38. doi: 10.1021/acsnano.5b05524. Epub 2015 Dec 29.


Comparison of 20 nm silver nanoparticles synthesized with and without a gold core: Structure, dissolution in cell culture media, and biological impact on macrophages.

Munusamy P, Wang C, Engelhard MH, Baer DR, Smith JN, Liu C, Kodali V, Thrall BD, Chen S, Porter AE, Ryan MP.

Biointerphases. 2015 Sep 15;10(3):031003. doi: 10.1116/1.4926547.


Comparative iron oxide nanoparticle cellular dosimetry and response in mice by the inhalation and liquid cell culture exposure routes.

Teeguarden JG, Mikheev VB, Minard KR, Forsythe WC, Wang W, Sharma G, Karin N, Tilton SC, Waters KM, Asgharian B, Price OR, Pounds JG, Thrall BD.

Part Fibre Toxicol. 2014 Sep 30;11:46. doi: 10.1186/s12989-014-0046-4.


Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling.

Su D, Gaffrey MJ, Guo J, Hatchell KE, Chu RK, Clauss TR, Aldrich JT, Wu S, Purvine S, Camp DG, Smith RD, Thrall BD, Qian WJ.

Free Radic Biol Med. 2014 Feb;67:460-70. doi: 10.1016/j.freeradbiomed.2013.12.004. Epub 2013 Dec 11.


Iron oxide nanoparticle agglomeration influences dose rates and modulates oxidative stress-mediated dose-response profiles in vitro.

Sharma G, Kodali V, Gaffrey M, Wang W, Minard KR, Karin NJ, Teeguarden JG, Thrall BD.

Nanotoxicology. 2014 Sep;8(6):663-75. doi: 10.3109/17435390.2013.822115. Epub 2013 Jul 31.


Dysregulation of macrophage activation profiles by engineered nanoparticles.

Kodali V, Littke MH, Tilton SC, Teeguarden JG, Shi L, Frevert CW, Wang W, Pounds JG, Thrall BD.

ACS Nano. 2013 Aug 27;7(8):6997-7010. doi: 10.1021/nn402145t. Epub 2013 Jul 9.


Preparation and Characterization Challenges to Understanding Environmental and Biological Impacts of Nanoparticles.

Karakoti AS, Munusamy P, Hostetler K, Kodali V, Kuchibhatla S, Orr G, Pounds JG, Teeguarden JG, Thrall BD, Baer DR.

Surf Interface Anal. 2012 Aug;44(5):882-889. Epub 2012 Apr 17.


Magnetic particle detection (MPD) for in-vitro dosimetry.

Minard KR, Littke MH, Wang W, Xiong Y, Teeguarden JG, Thrall BD.

Biosens Bioelectron. 2013 May 15;43:88-93. doi: 10.1016/j.bios.2012.12.011. Epub 2012 Dec 8.


Microdistribution and long-term retention of 239Pu (NO3)4 in the respiratory tracts of an acutely exposed plutonium worker and experimental beagle dogs.

Nielsen CE, Wilson DA, Brooks AL, McCord SL, Dagle GE, James AC, Tolmachev SY, Thrall BD, Morgan WF.

Cancer Res. 2012 Nov 1;72(21):5529-36. doi: 10.1158/0008-5472.CAN-12-1824. Epub 2012 Sep 7.


Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data.

Waters KM, Liu T, Quesenberry RD, Willse AR, Bandyopadhyay S, Kathmann LE, Weber TJ, Smith RD, Wiley HS, Thrall BD.

PLoS One. 2012;7(3):e34515. doi: 10.1371/journal.pone.0034515. Epub 2012 Mar 29.


Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size.

Zhang H, Burnum KE, Luna ML, Petritis BO, Kim JS, Qian WJ, Moore RJ, Heredia-Langner A, Webb-Robertson BJ, Thrall BD, Camp DG 2nd, Smith RD, Pounds JG, Liu T.

Proteomics. 2011 Dec;11(23):4569-77. doi: 10.1002/pmic.201100037. Epub 2011 Nov 4.


Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation.

McDermott JE, Archuleta M, Thrall BD, Adkins JN, Waters KM.

PLoS One. 2011 Feb 14;6(2):e14673. doi: 10.1371/journal.pone.0014673.


Testing in EHS: What is the Current Status of Experimentation?

Baer DR, Karakoti AS, Munusamy P, Thrall BD, Pounds JG, Teeguarden JG, Amonette JE, Orr G, Tratnyek PG, Nurmi JT.

Proc IEEE Conf Nanotechnol. 2011:18-19.


ISDD: A computational model of particle sedimentation, diffusion and target cell dosimetry for in vitro toxicity studies.

Hinderliter PM, Minard KR, Orr G, Chrisler WB, Thrall BD, Pounds JG, Teeguarden JG.

Part Fibre Toxicol. 2010 Nov 30;7(1):36. doi: 10.1186/1743-8977-7-36.


Cellular recognition and trafficking of amorphous silica nanoparticles by macrophage scavenger receptor A.

Orr GA, Chrisler WB, Cassens KJ, Tan R, Tarasevich BJ, Markillie LM, Zangar RC, Thrall BD.

Nanotoxicology. 2011 Sep;5(3):296-311. doi: 10.3109/17435390.2010.513836. Epub 2010 Sep 17.


Macrophage responses to silica nanoparticles are highly conserved across particle sizes.

Waters KM, Masiello LM, Zangar RC, Tarasevich BJ, Karin NJ, Quesenberry RD, Bandyopadhyay S, Teeguarden JG, Pounds JG, Thrall BD.

Toxicol Sci. 2009 Feb;107(2):553-69. doi: 10.1093/toxsci/kfn250. Epub 2008 Dec 10.


The mammary epithelial cell secretome and its regulation by signal transduction pathways.

Jacobs JM, Waters KM, Kathmann LE, Camp DG 2nd, Wiley HS, Smith RD, Thrall BD.

J Proteome Res. 2008 Feb;7(2):558-69. doi: 10.1021/pr0704377. Epub 2008 Jan 1.


Particokinetics in vitro: dosimetry considerations for in vitro nanoparticle toxicity assessments.

Teeguarden JG, Hinderliter PM, Orr G, Thrall BD, Pounds JG.

Toxicol Sci. 2007 Feb;95(2):300-12. Epub 2006 Nov 10. Review. Erratum in: Toxicol Sci. 2007 Jun;97(2):614.


Data merging for integrated microarray and proteomic analysis.

Waters KM, Pounds JG, Thrall BD.

Brief Funct Genomic Proteomic. 2006 Dec;5(4):261-72. Epub 2006 May 10. Review.


Functional link between TNF biosynthesis and CaM-dependent activation of inducible nitric oxide synthase in RAW 264.7 macrophages.

Weber TJ, Smallwood HS, Kathmann LE, Markillie LM, Squier TC, Thrall BD.

Am J Physiol Cell Physiol. 2006 Jun;290(6):C1512-20. Epub 2006 Jan 18.


Low-LET microbeam investigation of the track-end dependence of electron-induced damage in normal human diploid fibroblasts.

Sowa MB, Kathmann LE, Holben BA, Thrall BD, Kimmel GA.

Radiat Res. 2005 Nov;164(5):677-9.


Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome.

Liu T, Qian WJ, Chen WN, Jacobs JM, Moore RJ, Anderson DJ, Gritsenko MA, Monroe ME, Thrall BD, Camp DG 2nd, Smith RD.

Proteomics. 2005 Apr;5(5):1263-73.


High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology.

Liu T, Qian WJ, Strittmatter EF, Camp DG 2nd, Anderson GA, Thrall BD, Smith RD.

Anal Chem. 2004 Sep 15;76(18):5345-53.


Calmodulin involvement in stress-activated nuclear localization of albumin in JB6 epithelial cells.

Weber TJ, Negash S, Smallwood HS, Ramos KS, Thrall BD, Squier TC.

Biochemistry. 2004 Jun 15;43(23):7443-50.


Multidimensional proteome analysis of human mammary epithelial cells.

Jacobs JM, Mottaz HM, Yu LR, Anderson DJ, Moore RJ, Chen WN, Auberry KJ, Strittmatter EF, Monroe ME, Thrall BD, Camp DG 2nd, Smith RD.

J Proteome Res. 2004 Jan-Feb;3(1):68-75.


Induced autocrine signaling through the epidermal growth factor receptor contributes to the response of mammary epithelial cells to tumor necrosis factor alpha.

Chen WN, Woodbury RL, Kathmann LE, Opresko LK, Zangar RC, Wiley HS, Thrall BD.

J Biol Chem. 2004 Apr 30;279(18):18488-96. Epub 2004 Feb 20.


Probing conformational changes of gramicidin ion channels by single-molecule patch-clamp fluorescence microscopy.

Harms GS, Orr G, Montal M, Thrall BD, Colson SD, Lu HP.

Biophys J. 2003 Sep;85(3):1826-38.


Detection of in situ labeled cell surface proteins by mass spectrometry: application to the membrane subproteome of human mammary epithelial cells.

Chen WN, Yu LR, Strittmatter EF, Thrall BD, Camp DG 2nd, Smith RD.

Proteomics. 2003 Aug;3(8):1647-51.


Mode of action and pharmacokinetic studies of 2-butoxyethanol in the mouse with an emphasis on forestomach dosimetry.

Poet TS, Soelberg JJ, Weitz KK, Mast TJ, Miller RA, Thrall BD, Corley RA.

Toxicol Sci. 2003 Feb;71(2):176-89.


Establishment of a novel clonal murine bone marrow stromal cell line for assessment of p53 responses to genotoxic stress.

Gorbunov NV, Morris JE, Greenberger JS, Thrall BD.

Toxicology. 2002 Oct 15;179(3):257-66.


Dichloroacetate stimulates glycogen accumulation in primary hepatocytes through an insulin-independent mechanism.

Lingohr MK, Bull RJ, Kato-Weinstein J, Thrall BD.

Toxicol Sci. 2002 Aug;68(2):508-15.


Contribution of dichloroacetate and trichloroacetate to liver tumor induction in mice by trichloroethylene.

Bull RJ, Orner GA, Cheng RS, Stillwell L, Stauber AJ, Sasser LB, Lingohr MK, Thrall BD.

Toxicol Appl Pharmacol. 2002 Jul 1;182(1):55-65.


Achieving molecular selectivity in imaging using multiphoton Raman spectroscopy techniques.

Holtom GR, Thrall BD, Chin BY, Wiley HS, Colson SD.

Traffic. 2001 Nov;2(11):781-8. Review.


Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling.

Conrads TP, Alving K, Veenstra TD, Belov ME, Anderson GA, Anderson DJ, Lipton MS, Pasa-Tolić L, Udseth HR, Chrisler WB, Thrall BD, Smith RD.

Anal Chem. 2001 May 1;73(9):2132-9.


Differential effects of dihalogenated and trihalogenated acetates in the liver of B6C3F1 mice.

Kato-Weinstein J, Stauber AJ, Orner GA, Thrall BD, Bull RJ.

J Appl Toxicol. 2001 Mar-Apr;21(2):81-9.


Ultrasonic enhancement of gene transfection in murine melanoma tumors.

Miller DL, Bao S, Gies RA, Thrall BD.

Ultrasound Med Biol. 1999 Nov;25(9):1425-30.


Effects of dichloroacetate on glycogen metabolism in B6C3F1 mice.

Kato-Weinstein J, Lingohr MK, Orner GA, Thrall BD, Bull RJ.

Toxicology. 1998 Sep 15;130(2-3):141-54.


Human nucleotide excision repair protein XPA: extended X-ray absorption fine-structure evidence for a metal-binding domain.

Hess NJ, Buchko GW, Conradson SD, Espinosa FJ, Ni S, Thrall BD, Kennedy MA.

Protein Sci. 1998 Sep;7(9):1970-5.


Dichloroacetate and trichloroacetate promote clonal expansion of anchorage-independent hepatocytes in vivo and in vitro.

Stauber AJ, Bull RJ, Thrall BD.

Toxicol Appl Pharmacol. 1998 Jun;150(2):287-94.


Structural features of the minimal DNA binding domain (M98-F219) of human nucleotide excision repair protein XPA.

Buchko GW, Ni S, Thrall BD, Kennedy MA.

Nucleic Acids Res. 1998 Jun 1;26(11):2779-88.

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