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Items: 35

1.

Efficient pedigree recording for fast population genetics simulation.

Kelleher J, Thornton KR, Ashander J, Ralph PL.

PLoS Comput Biol. 2018 Nov 1;14(11):e1006581. doi: 10.1371/journal.pcbi.1006581. eCollection 2018 Nov.

2.

Evidence of directional and stabilizing selection in contemporary humans.

Sanjak JS, Sidorenko J, Robinson MR, Thornton KR, Visscher PM.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):151-156. doi: 10.1073/pnas.1707227114. Epub 2017 Dec 18. Erratum in: Proc Natl Acad Sci U S A. 2018 May 7;:.

3.

Tandem duplications lead to novel expression patterns through exon shuffling in Drosophila yakuba.

Rogers RL, Shao L, Thornton KR.

PLoS Genet. 2017 May 22;13(5):e1006795. doi: 10.1371/journal.pgen.1006795. eCollection 2017 May.

4.

A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets.

Sanjak JS, Long AD, Thornton KR.

PLoS Genet. 2017 Jan 19;13(1):e1006573. doi: 10.1371/journal.pgen.1006573. eCollection 2017 Jan.

5.

Efficient Software for Multi-marker, Region-Based Analysis of GWAS Data.

Sanjak JS, Long AD, Thornton KR.

G3 (Bethesda). 2016 Apr 7;6(4):1023-30. doi: 10.1534/g3.115.026013.

6.

Tandem Duplications and the Limits of Natural Selection in Drosophila yakuba and Drosophila simulans.

Rogers RL, Cridland JM, Shao L, Hu TT, Andolfatto P, Thornton KR.

PLoS One. 2015 Jul 15;10(7):e0132184. doi: 10.1371/journal.pone.0132184. eCollection 2015.

7.

Gene expression variation in Drosophila melanogaster due to rare transposable element insertion alleles of large effect.

Cridland JM, Thornton KR, Long AD.

Genetics. 2015 Jan;199(1):85-93. doi: 10.1534/genetics.114.170837. Epub 2014 Oct 21.

8.

Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.

Rogers RL, Shao L, Sanjak JS, Andolfatto P, Thornton KR.

G3 (Bethesda). 2014 Oct 1;4(12):2345-51. doi: 10.1534/g3.114.013532.

9.

A C++ template library for efficient forward-time population genetic simulation of large populations.

Thornton KR.

Genetics. 2014 Sep;198(1):157-66. doi: 10.1534/genetics.114.165019. Epub 2014 Jun 20.

10.

Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans.

Rogers RL, Cridland JM, Shao L, Hu TT, Andolfatto P, Thornton KR.

Mol Biol Evol. 2014 Jul;31(7):1750-66. doi: 10.1093/molbev/msu124. Epub 2014 Apr 7.

11.

The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms.

Baldwin-Brown JG, Long AD, Thornton KR.

Mol Biol Evol. 2014 Apr;31(4):1040-55. doi: 10.1093/molbev/msu048. Epub 2014 Jan 18.

12.

Abundance and distribution of transposable elements in two Drosophila QTL mapping resources.

Cridland JM, Macdonald SJ, Long AD, Thornton KR.

Mol Biol Evol. 2013 Oct;30(10):2311-27. doi: 10.1093/molbev/mst129. Epub 2013 Jul 24.

13.

Properties and modeling of GWAS when complex disease risk is due to non-complementing, deleterious mutations in genes of large effect.

Thornton KR, Foran AJ, Long AD.

PLoS Genet. 2013;9(2):e1003258. doi: 10.1371/journal.pgen.1003258. Epub 2013 Feb 21.

14.

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence.

Hu TT, Eisen MB, Thornton KR, Andolfatto P.

Genome Res. 2013 Jan;23(1):89-98. doi: 10.1101/gr.141689.112. Epub 2012 Aug 30.

15.

Genome sequencing reveals complex speciation in the Drosophila simulans clade.

Garrigan D, Kingan SB, Geneva AJ, Andolfatto P, Clark AG, Thornton KR, Presgraves DC.

Genome Res. 2012 Aug;22(8):1499-511. doi: 10.1101/gr.130922.111. Epub 2012 Apr 13.

16.

The Drosophila melanogaster Genetic Reference Panel.

Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu LL, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu YQ, Yamamoto A, Zhu Y, Bergman CM, Thornton KR, Mittelman D, Gibbs RA.

Nature. 2012 Feb 8;482(7384):173-8. doi: 10.1038/nature10811.

17.

Genome-wide analysis of a long-term evolution experiment with Drosophila.

Burke MK, Dunham JP, Shahrestani P, Thornton KR, Rose MR, Long AD.

Nature. 2010 Sep 30;467(7315):587-90. doi: 10.1038/nature09352. Epub 2010 Sep 15.

PMID:
20844486
18.
19.

Automating approximate Bayesian computation by local linear regression.

Thornton KR.

BMC Genet. 2009 Jul 7;10:35. doi: 10.1186/1471-2156-10-35.

20.

An approximate bayesian estimator suggests strong, recurrent selective sweeps in Drosophila.

Jensen JD, Thornton KR, Andolfatto P.

PLoS Genet. 2008 Sep 19;4(9):e1000198. doi: 10.1371/journal.pgen.1000198.

21.

Inferring selection in partially sequenced regions.

Jensen JD, Thornton KR, Aquadro CF.

Mol Biol Evol. 2008 Feb;25(2):438-46. doi: 10.1093/molbev/msm273. Epub 2007 Dec 28.

PMID:
18165259
22.

The neutral coalescent process for recent gene duplications and copy-number variants.

Thornton KR.

Genetics. 2007 Oct;177(2):987-1000. Epub 2007 Aug 24.

23.

A new approach for using genome scans to detect recent positive selection in the human genome.

Tang K, Thornton KR, Stoneking M.

PLoS Biol. 2007 Jul;5(7):e171. Epub 2007 Jun 19.

24.

On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations.

Jensen JD, Thornton KR, Bustamante CD, Aquadro CF.

Genetics. 2007 Aug;176(4):2371-9. Epub 2007 Jun 11.

25.

Progress and prospects in mapping recent selection in the genome.

Thornton KR, Jensen JD, Becquet C, Andolfatto P.

Heredity (Edinb). 2007 Jun;98(6):340-8. Epub 2007 May 2. Review.

26.

Controlling the false-positive rate in multilocus genome scans for selection.

Thornton KR, Jensen JD.

Genetics. 2007 Feb;175(2):737-50. Epub 2006 Nov 16.

27.
28.

Continuous glucose monitoring used to adjust diabetes therapy improves glycosylated hemoglobin: a pilot study.

Bode BW, Gross TM, Thornton KR, Mastrototaro JJ.

Diabetes Res Clin Pract. 1999 Dec;46(3):183-90. Erratum in: Diabetes Res Clin Pract 2000 Mar;47(3):225.

PMID:
10624783
29.

Heterogeneous estrogen receptor levels detected via multiple microsamples from individual breast cancers.

van Netten JP, Algard FT, Coy P, Carlyle SJ, Brigden ML, Thornton KR, Peter S, Fraser T, To MP.

Cancer. 1985 Oct 15;56(8):2019-24.

PMID:
2992754
30.

Estrogen receptor assay on breast cancer microsamples: implications of percent carcinoma estimation.

van Netten JP, Algard FT, Coy P, Carlyle SJ, Brigden ML, Thornton KR, To MP.

Cancer. 1982 Jun 1;49(11):2383-8.

PMID:
7074550
31.

Erythrocyte sedimentation rates in inclined vessels.

O'Brien RN, Hocking MB, McOrmond P, Thornton KR.

Can J Physiol Pharmacol. 1973 Sep;51(9):685-90. No abstract available.

PMID:
4753283
32.

The cytology of the pituitary gland in myxoedema.

THORNTON KR.

J Pathol Bacteriol. 1959 Jan;77(1):249-55. No abstract available.

PMID:
13621352
33.

Melanoma of the hard palate.

HOGGINS GS, THORNTON KR.

Proc R Soc Med. 1958 Sep;51(9):696-7. No abstract available.

34.

Mixed adrenogenital-Cushing syndrome following thyroidectomy.

BEVAN PG, THORNTON KR.

Lancet. 1957 May 4;272(6975):909-11. No abstract available.

PMID:
13417636
35.

Hyalinization and basophil adenomata in the pituitary gland.

CROOKE AC, PURVES HD, RUSSELL DS, THORNTON KR.

Proc R Soc Med. 1956 Dec;49(12):1014-20. No abstract available.

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