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Items: 24

1.

Quantitative mapping of protein-peptide affinity landscapes using spectrally encoded beads.

Nguyen HQ, Roy J, Harink B, Damle NP, Latorraca NR, Baxter BC, Brower K, Longwell SA, Kortemme T, Thorn KS, Cyert MS, Fordyce PM.

Elife. 2019 Jul 8;8. pii: e40499. doi: 10.7554/eLife.40499.

2.

Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance.

Mavor D, Barlow KA, Asarnow D, Birman Y, Britain D, Chen W, Green EM, Kenner LR, Mensa B, Morinishi LS, Nelson CA, Poss EM, Suresh P, Tian R, Arhar T, Ary BE, Bauer DP, Bergman ID, Brunetti RM, Chio CM, Dai SA, Dickinson MS, Elledge SK, Helsell CVM, Hendel NL, Kang E, Kern N, Khoroshkin MS, Kirkemo LL, Lewis GR, Lou K, Marin WM, Maxwell AM, McTigue PF, Myers-Turnbull D, Nagy TL, Natale AM, Oltion K, Pourmal S, Reder GK, Rettko NJ, Rohweder PJ, Schwarz DMC, Tan SK, Thomas PV, Tibble RW, Town JP, Tsai MK, Ugur FS, Wassarman DR, Wolff AM, Wu TS, Bogdanoff D, Li J, Thorn KS, O'Conchúir S, Swaney DL, Chow ED, Madhani HD, Redding S, Bolon DN, Kortemme T, DeRisi JL, Kampmann M, Fraser JS.

Biol Open. 2018 Jul 23;7(7). pii: bio036103. doi: 10.1242/bio.036103.

3.

Programmable Microfluidic Synthesis of Over One Thousand Uniquely Identifiable Spectral Codes.

Nguyen HQ, Baxter BC, Brower K, Diaz-Botia CA, DeRisi JL, Fordyce PM, Thorn KS.

Adv Opt Mater. 2017 Feb 2;5(3). pii: 1600548. doi: 10.1002/adom.201600548. Epub 2016 Oct 18.

4.

A Novel Model of Asymptomatic Plasmodium Parasitemia That Recapitulates Elements of the Human Immune Response to Chronic Infection.

Fontana MF, Baccarella A, Craft JF, Boyle MJ, McIntyre TI, Wood MD, Thorn KS, Anidi C, Bayat A, Chung MR, Hamburger R, Kim CY, Pearman E, Pham J, Tang JJ, Boon L, Kamya MR, Dorsey G, Feeney ME, Kim CC.

PLoS One. 2016 Sep 1;11(9):e0162132. doi: 10.1371/journal.pone.0162132. eCollection 2016.

5.

Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting.

Mavor D, Barlow K, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate RE, Green EM, Hulce KR, Ji W, Kenner LR, Mensa B, Morinishi LS, Moss SM, Mravic M, Muir RK, Niekamp S, Nnadi CI, Palovcak E, Poss EM, Ross TD, Salcedo EC, See SK, Subramaniam M, Wong AW, Li J, Thorn KS, Conchúir SÓ, Roscoe BP, Chow ED, DeRisi JL, Kortemme T, Bolon DN, Fraser JS.

Elife. 2016 Apr 25;5. pii: e15802. doi: 10.7554/eLife.15802.

6.

Correction: Programmable microfluidic synthesis of spectrally encoded microspheres.

Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL.

Lab Chip. 2015 Feb 21;15(4):1213. doi: 10.1039/c5lc90018b.

PMID:
25619960
7.

The cancer glycocalyx mechanically primes integrin-mediated growth and survival.

Paszek MJ, DuFort CC, Rossier O, Bainer R, Mouw JK, Godula K, Hudak JE, Lakins JN, Wijekoon AC, Cassereau L, Rubashkin MG, Magbanua MJ, Thorn KS, Davidson MW, Rugo HS, Park JW, Hammer DA, Giannone G, Bertozzi CR, Weaver VM.

Nature. 2014 Jul 17;511(7509):319-25. doi: 10.1038/nature13535. Epub 2014 Jun 25.

8.

High-resolution imaging of cardiomyocyte behavior reveals two distinct steps in ventricular trabeculation.

Staudt DW, Liu J, Thorn KS, Stuurman N, Liebling M, Stainier DY.

Development. 2014 Feb;141(3):585-93. doi: 10.1242/dev.098632. Epub 2014 Jan 8.

9.

A neo-substrate that amplifies catalytic activity of parkinson's-disease-related kinase PINK1.

Hertz NT, Berthet A, Sos ML, Thorn KS, Burlingame AL, Nakamura K, Shokat KM.

Cell. 2013 Aug 15;154(4):737-47. doi: 10.1016/j.cell.2013.07.030.

10.

Improved blue, green, and red fluorescent protein tagging vectors for S. cerevisiae.

Lee S, Lim WA, Thorn KS.

PLoS One. 2013 Jul 2;8(7):e67902. doi: 10.1371/journal.pone.0067902. Print 2013.

11.

Mitochondrial network size scaling in budding yeast.

Rafelski SM, Viana MP, Zhang Y, Chan YH, Thorn KS, Yam P, Fung JC, Li H, Costa Lda F, Marshall WF.

Science. 2012 Nov 9;338(6108):822-4. doi: 10.1126/science.1225720.

12.

Programmable microfluidic synthesis of spectrally encoded microspheres.

Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL.

Lab Chip. 2012 Nov 21;12(22):4716-23. doi: 10.1039/c2lc40699c. Erratum in: Lab Chip. 2015 Feb 21;15(4):1213.

PMID:
23042484
13.

Scanning angle interference microscopy reveals cell dynamics at the nanoscale.

Paszek MJ, DuFort CC, Rubashkin MG, Davidson MW, Thorn KS, Liphardt JT, Weaver VM.

Nat Methods. 2012 Jul 1;9(8):825-7. doi: 10.1038/nmeth.2077.

14.

Membrane expansion alleviates endoplasmic reticulum stress independently of the unfolded protein response.

Schuck S, Prinz WA, Thorn KS, Voss C, Walter P.

J Cell Biol. 2009 Nov 16;187(4):525-36. doi: 10.1083/jcb.200907074. Epub 2009 Nov 9.

15.

Real-time imaging of discrete exocytic events mediating surface delivery of AMPA receptors.

Yudowski GA, Puthenveedu MA, Leonoudakis D, Panicker S, Thorn KS, Beattie EC, von Zastrow M.

J Neurosci. 2007 Oct 10;27(41):11112-21.

16.

Intracellular protein interaction mapping with FRET hybrids.

You X, Nguyen AW, Jabaiah A, Sheff MA, Thorn KS, Daugherty PS.

Proc Natl Acad Sci U S A. 2006 Dec 5;103(49):18458-63. Epub 2006 Nov 27.

17.
18.

Interaction of the human adenovirus proteinase with its 11-amino acid cofactor pVIc.

Baniecki ML, McGrath WJ, McWhirter SM, Li C, Toledo DL, Pellicena P, Barnard DL, Thorn KS, Mangel WF.

Biochemistry. 2001 Oct 16;40(41):12349-56. Erratum in: Biochemistry 2002 Jan 8;41(1):430.

19.
20.

Engineering the processive run length of the kinesin motor.

Thorn KS, Ubersax JA, Vale RD.

J Cell Biol. 2000 Nov 27;151(5):1093-100.

21.
22.

A novel method of affinity-purifying proteins using a bis-arsenical fluorescein.

Thorn KS, Naber N, Matuska M, Vale RD, Cooke R.

Protein Sci. 2000 Feb;9(2):213-7.

23.

Anatomy of hot spots in protein interfaces.

Bogan AA, Thorn KS.

J Mol Biol. 1998 Jul 3;280(1):1-9. Review.

PMID:
9653027
24.

The crystal structure of a major allergen from plants.

Thorn KS, Christensen HE, Shigeta R, Huddler D, Shalaby L, Lindberg U, Chua NH, Schutt CE.

Structure. 1997 Jan 15;5(1):19-32.

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