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Items: 1 to 50 of 90

1.

Publisher Correction: Sex-dependent dominance maintains migration supergene in rainbow trout.

Pearse DE, Barson NJ, Nome T, Gao G, Campbell MA, Abadía-Cardoso A, Anderson EC, Rundio DE, Williams TH, Naish KA, Moen T, Liu S, Kent M, Moser M, Minkley DR, Rondeau EB, Brieuc MSO, Sandve SR, Miller MR, Cedillo L, Baruch K, Hernandez AG, Ben-Zvi G, Shem-Tov D, Barad O, Kuzishchin K, Garza JC, Lindley ST, Koop BF, Thorgaard GH, Palti Y, Lien S.

Nat Ecol Evol. 2020 Jan;4(1):170. doi: 10.1038/s41559-019-1076-y.

PMID:
31819240
2.

Sex-dependent dominance maintains migration supergene in rainbow trout.

Pearse DE, Barson NJ, Nome T, Gao G, Campbell MA, Abadía-Cardoso A, Anderson EC, Rundio DE, Williams TH, Naish KA, Moen T, Liu S, Kent M, Moser M, Minkley DR, Rondeau EB, Brieuc MSO, Sandve SR, Miller MR, Cedillo L, Baruch K, Hernandez AG, Ben-Zvi G, Shem-Tov D, Barad O, Kuzishchin K, Garza JC, Lindley ST, Koop BF, Thorgaard GH, Palti Y, Lien S.

Nat Ecol Evol. 2019 Dec;3(12):1731-1742. doi: 10.1038/s41559-019-1044-6. Epub 2019 Nov 25. Erratum in: Nat Ecol Evol. 2019 Dec 9;:.

PMID:
31768021
3.

A New Single Nucleotide Polymorphism Database for Rainbow Trout Generated Through Whole Genome Resequencing.

Gao G, Nome T, Pearse DE, Moen T, Naish KA, Thorgaard GH, Lien S, Palti Y.

Front Genet. 2018 Apr 24;9:147. doi: 10.3389/fgene.2018.00147. eCollection 2018.

4.

Increased mitochondrial DNA diversity in ancient Columbia River basin Chinook salmon Oncorhynchus tshawytscha.

Johnson BM, Kemp BM, Thorgaard GH.

PLoS One. 2018 Jan 10;13(1):e0190059. doi: 10.1371/journal.pone.0190059. eCollection 2018.

5.

Migration-related phenotypic divergence is associated with epigenetic modifications in rainbow trout.

Baerwald MR, Meek MH, Stephens MR, Nagarajan RP, Goodbla AM, Tomalty KMH, Thorgaard GH, May B, Nichols KM.

Mol Ecol. 2016 Apr;25(8):1785-1800. doi: 10.1111/mec.13231. Epub 2015 Jun 5.

6.

Differential Expression of Genes that Control Respiration Contribute to Thermal Adaptation in Redband Trout (Oncorhynchus mykiss gairdneri).

Garvin MR, Thorgaard GH, Narum SR.

Genome Biol Evol. 2015 May 4;7(6):1404-14. doi: 10.1093/gbe/evv078.

7.

Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout.

Salem M, Paneru B, Al-Tobasei R, Abdouni F, Thorgaard GH, Rexroad CE, Yao J.

PLoS One. 2015 Mar 20;10(3):e0121778. doi: 10.1371/journal.pone.0121778. eCollection 2015.

8.

Aggressive behavior, brain size and domestication in clonal rainbow trout lines.

Campbell JM, Carter PA, Wheeler PA, Thorgaard GH.

Behav Genet. 2015 Mar;45(2):245-54. doi: 10.1007/s10519-014-9696-0. Epub 2015 Feb 4.

PMID:
25647468
9.

Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes.

Ali A, Rexroad CE, Thorgaard GH, Yao J, Salem M.

Front Genet. 2014 Oct 14;5:348. doi: 10.3389/fgene.2014.00348. eCollection 2014.

10.

Antipredator behavior QTL: differences in rainbow trout clonal lines derived from wild and hatchery populations.

Christensen KA, Brunelli JP, Wheeler PA, Thorgaard GH.

Behav Genet. 2014 Sep;44(5):535-46. doi: 10.1007/s10519-014-9663-9. Epub 2014 May 31.

PMID:
24878695
11.

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noël B, Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais P, Bardou P, Montfort J, Klopp C, Cabau C, Gaspin C, Thorgaard GH, Boussaha M, Quillet E, Guyomard R, Galiana D, Bobe J, Volff JN, Genêt C, Wincker P, Jaillon O, Roest Crollius H, Guiguen Y.

Nat Commun. 2014 Apr 22;5:3657. doi: 10.1038/ncomms4657.

12.

Mapping and Expression of Candidate Genes for Development Rate in Rainbow Trout (Oncorhynchus mykiss).

Hale MC, Colletti JA, Gahr SA, Scardina J, Thrower FP, Harmon M, Carter M, Phillips RB, Thorgaard GH, Rexroad CE 3rd, Nichols KM.

J Hered. 2014 Jul-Aug;105(4):506-520. Epub 2014 Apr 17.

PMID:
24744432
13.

Transfer of serum and cells from Yersinia ruckeri vaccinated doubled-haploid hot creek rainbow trout into outcross F1 progeny elucidates mechanisms of vaccine-induced protection.

Evenhuis JP, Wiens GD, Wheeler P, Welch TJ, LaPatra SE, Thorgaard GH.

Dev Comp Immunol. 2014 May;44(1):145-51. doi: 10.1016/j.dci.2013.12.004. Epub 2013 Dec 14.

PMID:
24342572
14.

A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids.

Palti Y, Gao G, Miller MR, Vallejo RL, Wheeler PA, Quillet E, Yao J, Thorgaard GH, Salem M, Rexroad CE 3rd.

Mol Ecol Resour. 2014 May;14(3):588-96. doi: 10.1111/1755-0998.12204. Epub 2013 Dec 13.

PMID:
24251403
15.

Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication.

Christensen KA, Brunelli JP, Lambert MJ, DeKoning J, Phillips RB, Thorgaard GH.

BMC Bioinformatics. 2013 Nov 16;14:325. doi: 10.1186/1471-2105-14-325.

16.

Oxidative stress among SOD-1 genotypes in rainbow trout (Oncorhynchus mykiss).

Heink AE, Parrish AN, Thorgaard GH, Carter PA.

Aquat Toxicol. 2013 Nov 15;144-145:75-82. doi: 10.1016/j.aquatox.2013.09.032. Epub 2013 Oct 8.

PMID:
24157719
17.

Characterization of the OmyY1 Region on the Rainbow Trout Y Chromosome.

Phillips RB, Dekoning JJ, Brunelli JP, Faber-Hammond JJ, Hansen JD, Christensen KA, Renn SC, Thorgaard GH.

Int J Genomics. 2013;2013:261730. doi: 10.1155/2013/261730. Epub 2013 Mar 11.

18.

Domestication shapes morphology in rainbow trout Oncorhynchus mykiss.

Pulcini D, Wheeler PA, Cataudella S, Russo T, Thorgaard GH.

J Fish Biol. 2013 Feb;82(2):390-407. doi: 10.1111/jfb.12002. Epub 2013 Feb 4.

PMID:
23398058
19.

Y chromosome phylogeny for cutthroat trout (Oncorhynchus clarkii) subspecies is generally concordant with those of other markers.

Brunelli JP, Mallatt JM, Leary RF, Alfaqih M, Phillips RB, Thorgaard GH.

Mol Phylogenet Evol. 2013 Mar;66(3):592-602. doi: 10.1016/j.ympev.2012.09.026. Epub 2012 Oct 8.

PMID:
23059727
20.

Analysis of host genetic diversity and viral entry as sources of between-host variation in viral load.

Wargo AR, Kell AM, Scott RJ, Thorgaard GH, Kurath G.

Virus Res. 2012 Apr;165(1):71-80. doi: 10.1016/j.virusres.2012.01.010. Epub 2012 Jan 30.

21.

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations.

Miller MR, Brunelli JP, Wheeler PA, Liu S, Rexroad CE 3rd, Palti Y, Doe CQ, Thorgaard GH.

Mol Ecol. 2012 Jan;21(2):237-49. doi: 10.1111/j.1365-294X.2011.05305.x. Epub 2011 Oct 11.

22.

Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads.

Hale MC, Xu P, Scardina J, Wheeler PA, Thorgaard GH, Nichols KM.

BMC Genomics. 2011 Aug 8;12:404. doi: 10.1186/1471-2164-12-404.

23.

Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches.

Salem M, Rexroad CE 3rd, Wang J, Thorgaard GH, Yao J.

BMC Genomics. 2010 Oct 13;11:564. doi: 10.1186/1471-2164-11-564.

24.

Deep divergence and apparent sex-biased dispersal revealed by a Y-linked marker in rainbow trout.

Brunelli JP, Steele CA, Thorgaard GH.

Mol Phylogenet Evol. 2010 Sep;56(3):983-90. doi: 10.1016/j.ympev.2010.05.016. Epub 2010 May 28.

25.

Transcriptome profiling of embryonic development rate in rainbow trout advanced backcross introgression lines.

Xu P, McIntyre LM, Scardina J, Wheeler PA, Thorgaard GH, Nichols KM.

Mar Biotechnol (NY). 2011 Apr;13(2):215-31. doi: 10.1007/s10126-010-9283-1. Epub 2010 Mar 30.

PMID:
20352270
26.

Universal mtDNA primers for species identification of degraded bony fish samples.

Jordan LG, Steele CA, Thorgaard GH.

Mol Ecol Resour. 2010 Jan;10(1):225-8. doi: 10.1111/j.1755-0998.2009.02739.x. Epub 2009 Jun 25.

PMID:
21565016
27.

A first generation BAC-based physical map of the rainbow trout genome.

Palti Y, Luo MC, Hu Y, Genet C, You FM, Vallejo RL, Thorgaard GH, Wheeler PA, Rexroad CE 3rd.

BMC Genomics. 2009 Oct 8;10:462. doi: 10.1186/1471-2164-10-462.

28.

Recombination is suppressed over a large region of the rainbow trout Y chromosome.

Phillips RB, DeKoning JJ, Ventura AB, Nichols KM, Drew RE, Chaves LD, Reed KM, Felip A, Thorgaard GH.

Anim Genet. 2009 Dec;40(6):925-32. doi: 10.1111/j.1365-2052.2009.01944.x. Epub 2009 Sep 10.

PMID:
19744144
29.

Comparative genome mapping reveals evidence of gene conversion between Sox9 paralogs of rainbow trout (Oncorhynchus mykiss).

Alfaqih MA, Steele CA, Morris RT, Thorgaard GH.

Comp Biochem Physiol Part D Genomics Proteomics. 2009 Sep;4(3):147-53. doi: 10.1016/j.cbd.2009.01.003. Epub 2009 Jan 24.

PMID:
20403766
30.

Mapping of five candidate sex-determining loci in rainbow trout (Oncorhynchus mykiss).

Alfaqih MA, Brunelli JP, Drew RE, Thorgaard GH.

BMC Genet. 2009 Jan 15;10:2. doi: 10.1186/1471-2156-10-2.

31.

Characterization of the interferon genes in homozygous rainbow trout reveals two novel genes, alternate splicing and differential regulation of duplicated genes.

Purcell MK, Laing KJ, Woodson JC, Thorgaard GH, Hansen JD.

Fish Shellfish Immunol. 2009 Feb;26(2):293-304. doi: 10.1016/j.fsi.2008.11.012. Epub 2008 Dec 3.

PMID:
19070666
32.

Genome assembly anchored QTL map of bovine chromosome 14.

Wibowo TA, Gaskins CT, Newberry RC, Thorgaard GH, Michal JJ, Jiang Z.

Int J Biol Sci. 2008;4(6):406-14. Epub 2008 Nov 12. Review.

33.

Y-specific sequences and polymorphisms in rainbow trout and Chinook salmon.

Brunelli JP, Wertzler KJ, Sundin K, Thorgaard GH.

Genome. 2008 Sep;51(9):739-48. doi: 10.1139/G08-060.

PMID:
18772952
34.

The cutthroat trout Y chromosome is conserved with that of rainbow trout.

Alfaqih MA, Phillips RB, Wheeler PA, Thorgaard GH.

Cytogenet Genome Res. 2008;121(3-4):255-9. doi: 10.1159/000138893. Epub 2008 Aug 29.

PMID:
18758167
35.

The genetic basis of smoltification-related traits in Oncorhynchus mykiss.

Nichols KM, Edo AF, Wheeler PA, Thorgaard GH.

Genetics. 2008 Jul;179(3):1559-75. doi: 10.1534/genetics.107.084251. Epub 2008 Jun 18.

36.

Special feature--roundtable discussion. Fish models for studying adaptive evolution and speciation.

Kocher TD, Jeffery WR, Parichy DM, Peichel CL, Streelman JT, Thorgaard GH.

Zebrafish. 2005;2(3):147-56. doi: 10.1089/zeb.2005.2.147.

PMID:
18248189
37.

Heat shock protein (HSP70) RNA expression differs among rainbow trout (Oncorhynchus mykiss) clonal lines.

Heredia-Middleton P, Brunelli J, Drew RE, Thorgaard GH.

Comp Biochem Physiol B Biochem Mol Biol. 2008 Apr;149(4):552-6. doi: 10.1016/j.cbpb.2007.05.012. Epub 2007 Dec 23.

PMID:
18234536
38.

Transcriptional profiling of MHC class I genes in rainbow trout infected with infectious hematopoietic necrosis virus.

Landis ED, Purcell MK, Thorgaard GH, Wheeler PA, Hansen JD.

Mol Immunol. 2008 Mar;45(6):1646-57. doi: 10.1016/j.molimm.2007.10.003. Epub 2008 Jan 9.

PMID:
18187194
39.

Transcriptome profiles of livers and kidneys from three rainbow trout (Oncorhynchus mykiss) clonal lines distinguish stocks from three allopatric populations.

Bayne CJ, Gerwick L, Wheeler PA, Thorgaard GH.

Comp Biochem Physiol Part D Genomics Proteomics. 2006 Dec;1(4):396-403. doi: 10.1016/j.cbd.2006.10.001. Epub 2006 Oct 7.

PMID:
20483271
40.

Quantitative trait loci x maternal cytoplasmic environment interaction for development rate in Oncorhynchus mykiss.

Nichols KM, Broman KW, Sundin K, Young JM, Wheeler PA, Thorgaard GH.

Genetics. 2007 Jan;175(1):335-47. Epub 2006 Oct 22.

41.

Assignment of rainbow trout linkage groups to specific chromosomes.

Phillips RB, Nichols KM, DeKoning JJ, Morasch MR, Keatley KA, Rexroad C 3rd, Gahr SA, Danzmann RG, Drew RE, Thorgaard GH.

Genetics. 2006 Nov;174(3):1661-70. Epub 2006 Sep 1.

42.

A simplified QTL mapping approach for screening and mapping of novel AFLP markers associated with beef marbling.

Xiao Q, Wibowo TA, Wu XL, Michal JJ, Reeves JJ, Busboom JR, Thorgaard GH, Jiang Z.

J Biotechnol. 2007 Jan 1;127(2):177-87. Epub 2006 Jul 4.

PMID:
16901568
43.

A novel nuclear-encoded mitochondrial poly(A) polymerase PAPD1 is a potential candidate gene for the extreme obesity related phenotypes in mammals.

Xiao Q, Wu XL, Michal JJ, Reeves JJ, Busboom JR, Thorgaard GH, Jiang Z.

Int J Biol Sci. 2006;2(4):171-8. Epub 2006 May 18.

44.

Intraspecific variation in the rainbow trout mitochondrial DNA genome.

Brown KH, Drew RE, Weber LA, Thorgaard GH.

Comp Biochem Physiol Part D Genomics Proteomics. 2006 Jun;1(2):219-26. doi: 10.1016/j.cbd.2005.11.004. Epub 2006 Jan 20.

PMID:
20483253
45.

Use of androgenesis for estimating maternal and mitochondrial genome effects on development and oxygen consumption in rainbow trout, Oncorhynchus mykiss.

Brown KH, Lee RW, Thorgaard GH.

Comp Biochem Physiol B Biochem Mol Biol. 2006 Apr;143(4):415-21. Epub 2006 Feb 3.

PMID:
16458562
46.

Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus.

Purcell MK, Nichols KM, Winton JR, Kurath G, Thorgaard GH, Wheeler P, Hansen JD, Herwig RP, Park LK.

Mol Immunol. 2006 May;43(13):2089-106. Epub 2006 Jan 19.

PMID:
16426680
47.

Polymorphism and differentiation of rainbow trout Y chromosomes.

Felip A, Fujiwara A, Young WP, Wheeler PA, Noakes M, Phillips RB, Thorgaard GH.

Genome. 2004 Dec;47(6):1105-13.

PMID:
15644968
48.

Does differential selection on the 5S rDNA explain why the rainbow trout sex chromosome heteromorphism is not linked to the SEX locus?

Phillips RB, Noakes MA, Morasch M, Felip A, Thorgaard GH.

Cytogenet Genome Res. 2004;105(1):122-5.

PMID:
15218267
49.

Behavioral differences among rainbow trout clonal lines.

Lucas MD, Drew RE, Wheeler PA, Verrell PA, Thorgaard GH.

Behav Genet. 2004 May;34(3):355-65.

PMID:
14990874
50.

A single major chromosomal region controls natural killer cell-like activity in rainbow trout.

Zimmerman AM, Evenhuis JP, Thorgaard GH, Ristow SS.

Immunogenetics. 2004 Mar;55(12):825-35. Epub 2004 Feb 17.

PMID:
14968267

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