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Items: 1 to 50 of 56

1.

An LCA of the Pelamis wave energy converter.

Thomson RC, Chick JP, Harrison GP.

Int J Life Cycle Assess. 2019;24(1):51-63. doi: 10.1007/s11367-018-1504-2. Epub 2018 Jul 23.

2.

Complex patterns of hybridization and introgression across evolutionary timescales in Mexican whiptail lizards (Aspidoscelis).

Barley AJ, Nieto-Montes de Oca A, Reeder TW, Manríquez-Morán NL, Arenas Monroy JC, Hernández-Gallegos O, Thomson RC.

Mol Phylogenet Evol. 2019 Mar;132:284-295. doi: 10.1016/j.ympev.2018.12.016. Epub 2018 Dec 15.

PMID:
30562610
3.

Phylogeography of a widespread lizard complex reflects patterns of both geographic and ecological isolation.

Gray LN, Barley AJ, Poe S, Thomson RC, Nieto-Montes de Oca A, Wang IJ.

Mol Ecol. 2019 Feb;28(3):644-657. doi: 10.1111/mec.14970. Epub 2019 Feb 13.

PMID:
30525264
4.

Revised classification of the righteye flounders (Teleostei: Pleuronectidae) based on multilocus phylogeny with complete taxon sampling.

Vinnikov KA, Thomson RC, Munroe TA.

Mol Phylogenet Evol. 2018 Aug;125:147-162. doi: 10.1016/j.ympev.2018.03.014. Epub 2018 Mar 10.

PMID:
29535031
5.

Variation Across Mitochondrial Gene Trees Provides Evidence for Systematic Error: How Much Gene Tree Variation Is Biological?

Richards EJ, Brown JM, Barley AJ, Chong RA, Thomson RC.

Syst Biol. 2018 Sep 1;67(5):847-860. doi: 10.1093/sysbio/syy013.

PMID:
29471536
6.

The Behavior of Metropolis-Coupled Markov Chains When Sampling Rugged Phylogenetic Distributions.

Brown JM, Thomson RC.

Syst Biol. 2018 Jul 1;67(4):729-734. doi: 10.1093/sysbio/syy008.

PMID:
29462409
7.

Molecular phylogeny and divergence of the map turtles (Emydidae: Graptemys).

Thomson RC, Spinks PQ, Shaffer HB.

Mol Phylogenet Evol. 2018 Apr;121:61-70. doi: 10.1016/j.ympev.2017.11.012. Epub 2017 Dec 11.

PMID:
29242165
8.

P3: Phylogenetic Posterior Prediction in RevBayes.

Höhna S, Coghill LM, Mount GG, Thomson RC, Brown JM.

Mol Biol Evol. 2018 Apr 1;35(4):1028-1034. doi: 10.1093/molbev/msx286. Erratum in: Mol Biol Evol. 2018 Jul 1;35(7):1821.

PMID:
29136211
9.

Impact of Model Violations on the Inference of Species Boundaries Under the Multispecies Coalescent.

Barley AJ, Brown JM, Thomson RC.

Syst Biol. 2018 Mar 1;67(2):269-284. doi: 10.1093/sysbio/syx073.

PMID:
28945903
10.

Bayes Factors Unmask Highly Variable Information Content, Bias, and Extreme Influence in Phylogenomic Analyses.

Brown JM, Thomson RC.

Syst Biol. 2017 Jul 1;66(4):517-530. doi: 10.1093/sysbio/syw101.

PMID:
28003531
11.

Corrigendum to "Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity" [Mol. Phylogen. Evol. 106 (2017) 241-253].

Nieto-Montes de Oca A, Barley AJ, Meza-Lázaro RN, García-Vázquez UO, Zamora-Abrego JG, Thomson RC, Leaché AD.

Mol Phylogenet Evol. 2017 Feb;107:644. doi: 10.1016/j.ympev.2016.11.002. Epub 2016 Nov 2. No abstract available.

PMID:
27816561
12.

Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity.

Nieto-Montes de Oca A, Barley AJ, Meza-Lázaro RN, García-Vázquez UO, Zamora-Abrego JG, Thomson RC, Leaché AD.

Mol Phylogenet Evol. 2017 Jan;106:241-253. doi: 10.1016/j.ympev.2016.09.001. Epub 2016 Oct 5. Erratum in: Mol Phylogenet Evol. 2017 Feb;107:644.

PMID:
27720785
13.

Phylogeny and temporal diversification of the New World pond turtles (Emydidae).

Spinks PQ, Thomson RC, McCartney-Melstad E, Shaffer HB.

Mol Phylogenet Evol. 2016 Oct;103:85-97. doi: 10.1016/j.ympev.2016.07.007. Epub 2016 Jul 9.

PMID:
27400630
14.

Assessing the performance of DNA barcoding using posterior predictive simulations.

Barley AJ, Thomson RC.

Mol Ecol. 2016 May;25(9):1944-57. doi: 10.1111/mec.13590. Epub 2016 Mar 28.

PMID:
26915049
15.

Sun skink landscape genomics: assessing the roles of micro-evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape.

Barley AJ, Monnahan PJ, Thomson RC, Grismer LL, Brown RM.

Mol Ecol. 2015 Apr;24(8):1696-712. doi: 10.1111/mec.13151. Epub 2015 Apr 6.

PMID:
25763872
16.

A critical appraisal of the use of microRNA data in phylogenetics.

Thomson RC, Plachetzki DC, Mahler DL, Moore BR.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):E3659-68. doi: 10.1073/pnas.1407207111. Epub 2014 Jul 28.

17.

A time-calibrated phylogeny of the butterfly tribe Melitaeini.

Long EC, Thomson RC, Shapiro AM.

Mol Phylogenet Evol. 2014 Oct;79:69-81. doi: 10.1016/j.ympev.2014.06.010. Epub 2014 Jun 18.

PMID:
24952320
18.

Multilocus phylogeny of the New-World mud turtles (Kinosternidae) supports the traditional classification of the group.

Spinks PQ, Thomson RC, Gidiş M, Bradley Shaffer H.

Mol Phylogenet Evol. 2014 Jul;76:254-60. doi: 10.1016/j.ympev.2014.03.025. Epub 2014 Apr 2.

PMID:
24704303
19.

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle.

Spinks PQ, Thomson RC, Shaffer HB.

Mol Ecol. 2014 May;23(9):2228-41. doi: 10.1111/mec.12736. Epub 2014 Apr 18.

PMID:
24673803
20.

Misleading phylogenetic inferences based on single-exemplar sampling in the turtle genus Pseudemys.

Spinks PQ, Thomson RC, Pauly GB, Newman CE, Mount G, Shaffer HB.

Mol Phylogenet Evol. 2013 Aug;68(2):269-81. doi: 10.1016/j.ympev.2013.03.031. Epub 2013 Apr 12.

PMID:
23583419
21.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

22.

Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora.

Spinks PQ, Thomson RC, Zhang Y, Che J, Wu Y, Shaffer HB.

Mol Phylogenet Evol. 2012 Jun;63(3):656-67.

PMID:
22649793
23.
24.

Biomechanical trade-offs bias rates of evolution in the feeding apparatus of fishes.

Holzman R, Collar DC, Price SA, Hulsey CD, Thomson RC, Wainwright PC.

Proc Biol Sci. 2012 Apr 7;279(1732):1287-92. doi: 10.1098/rspb.2011.1838. Epub 2011 Oct 12.

25.

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles.

Thomson RC, Shaffer HB.

Syst Biol. 2010 Jan;59(1):42-58. doi: 10.1093/sysbio/syp075. Epub 2009 Nov 11.

PMID:
20525619
26.

Genome-enabled development of DNA markers for ecology, evolution and conservation.

Thomson RC, Wang IJ, Johnson JR.

Mol Ecol. 2010 Jun;19(11):2184-95. doi: 10.1111/j.1365-294X.2010.04650.x. Epub 2010 May 10. Review.

PMID:
20465588
27.

Rapid progress on the vertebrate tree of life.

Thomson RC, Shaffer HB.

BMC Biol. 2010 Mar 8;8:19. doi: 10.1186/1741-7007-8-19.

28.

Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California.

Spinks PQ, Thomson RC, Shaffer HB.

Mol Ecol. 2010 Feb;19(3):542-56. doi: 10.1111/j.1365-294X.2009.04451.x. Epub 2009 Dec 30.

PMID:
20051011
29.

Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life.

Barley AJ, Spinks PQ, Thomson RC, Shaffer HB.

Mol Phylogenet Evol. 2010 Jun;55(3):1189-94. doi: 10.1016/j.ympev.2009.11.005. Epub 2009 Nov 12.

PMID:
19913628
30.
31.

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles.

Spinks PQ, Thomson RC, Lovely GA, Shaffer HB.

BMC Evol Biol. 2009 Mar 12;9:56. doi: 10.1186/1471-2148-9-56.

32.

Combined EBSD/EDS tomography in a dual-beam FIB/FEG-SEM.

West GD, Thomson RC.

J Microsc. 2009 Mar;233(3):442-50. doi: 10.1111/j.1365-2818.2009.03138.x.

33.

Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles.

Thomson RC, Shedlock AM, Edwards SV, Shaffer HB.

Mol Phylogenet Evol. 2008 Nov;49(2):514-25. doi: 10.1016/j.ympev.2008.08.006. Epub 2008 Aug 12.

PMID:
18761096
34.

Expansion and activation of NK cell populations in a gammaherpesvirus infection.

Thomson RC, Petrik J, Nash AA, Dutia BM.

Scand J Immunol. 2008 May;67(5):489-95. doi: 10.1111/j.1365-3083.2008.02100.x. Epub 2008 Mar 18.

35.

Delimiting species in recent radiations.

Shaffer HB, Thomson RC.

Syst Biol. 2007 Dec;56(6):896-906.

PMID:
18066926
36.

Microstructural characterization of autogenous laser welds on 316L stainless steel using EBSD and EDS.

Kell J, Tyrer JR, Higginson RL, Thomson RC.

J Microsc. 2005 Feb;217(Pt 2):167-73.

37.

rhBMP-2 significantly enhances guided bone regeneration.

Wikesjö UM, Qahash M, Thomson RC, Cook AD, Rohrer MD, Wozney JM, Hardwick WR.

Clin Oral Implants Res. 2004 Apr;15(2):194-204.

PMID:
15008931
38.
39.

Periodontal repair in dogs: space-providing ePTFE devices increase rhBMP-2/ACS-induced bone formation.

Wikesjö UM, Xiropaidis AV, Thomson RC, Cook AD, Selvig KA, Hardwick WR.

J Clin Periodontol. 2003 Aug;30(8):715-25.

PMID:
12887340
40.

Periodontal repair in dogs: rhBMP-2 significantly enhances bone formation under provisions for guided tissue regeneration.

Wikesjö UM, Xiropaidis AV, Thomson RC, Cook AD, Selvig KA, Hardwick WR.

J Clin Periodontol. 2003 Aug;30(8):705-14.

PMID:
12887339
41.

Periodontal repair in dogs: gingival tissue occlusion, a critical requirement for GTR?

Wikesjö UM, Lim WH, Thomson RC, Hardwick WR.

J Clin Periodontol. 2003 Jul;30(7):655-64.

PMID:
12834504
42.

Periodontal repair in dogs: evaluation of a bioabsorbable space-providing macroporous membrane with recombinant human bone morphogenetic protein-2.

Wikesjö UM, Lim WH, Thomson RC, Cook AD, Wozney JM, Hardwick WR.

J Periodontol. 2003 May;74(5):635-47.

PMID:
12816296
43.

Periodontal Repair in Dogs: Evaluation of a Bioabsorbable Space-Providing Macro-Porous Membrane with Recombinant Human Bone Morphogenetic Protein-2.

Wikesjö UME, Lim WH, Thomson RC, Cook AD, Wozney JM, Hardwick WR.

J Periodontol. 2003 May;74(5):635-647. doi: 10.1902/jop.2003.74.5.635.

PMID:
29539121
44.

Improvements in GORE-TEX vascular graft performance by Carmeda BioActive surface heparin immobilization.

Begovac PC, Thomson RC, Fisher JL, Hughson A, Gällhagen A.

Eur J Vasc Endovasc Surg. 2003 May;25(5):432-7.

45.

Guided tissue fabrication from periosteum using preformed biodegradable polymer scaffolds.

Thomson RC, Mikos AG, Beahm E, Lemon JC, Satterfield WC, Aufdemorte TB, Miller MJ.

Biomaterials. 1999 Nov;20(21):2007-18.

PMID:
10535812
46.

Hydroxyapatite fiber reinforced poly(alpha-hydroxy ester) foams for bone regeneration.

Thomson RC, Yaszemski MJ, Powers JM, Mikos AG.

Biomaterials. 1998 Nov;19(21):1935-43.

PMID:
9863527
47.

Retinal pigment epithelium cells cultured on synthetic biodegradable polymers.

Giordano GG, Thomson RC, Ishaug SL, Mikos AG, Cumber S, Garcia CA, Lahiri-Munir D.

J Biomed Mater Res. 1997 Jan;34(1):87-93.

PMID:
8978657
48.

Manufacture and characterization of poly(alpha-hydroxy ester) thin films as temporary substrates for retinal pigment epithelium cells.

Thomson RC, Giordano GG, Collier JH, Ishaug SL, Mikos AG, Lahiri-Munir D, Garcia CA.

Biomaterials. 1996 Feb;17(3):321-7.

PMID:
8745329
49.

Hydatid cyst development in an experimentally infected wild rabbit.

Jenkins DJ, Thomson RC.

Vet Rec. 1995 Aug 5;137(6):148-9. No abstract available.

PMID:
8540209
50.

Fabrication of biodegradable polymer scaffolds to engineer trabecular bone.

Thomson RC, Yaszemski MJ, Powers JM, Mikos AG.

J Biomater Sci Polym Ed. 1995;7(1):23-38.

PMID:
7662615

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