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Items: 1 to 50 of 65

1.

Diverse Large HIV-1 Non-subtype B Clusters Are Spreading Among Men Who Have Sex With Men in Spain.

Delgado E, Benito S, Montero V, Cuevas MT, Fernández-García A, Sánchez-Martínez M, García-Bodas E, Díez-Fuertes F, Gil H, Cañada J, Carrera C, Martínez-López J, Sintes M, Pérez-Álvarez L, Thomson MM; Spanish Group for the Study of New HIV Diagnoses.

Front Microbiol. 2019 Apr 3;10:655. doi: 10.3389/fmicb.2019.00655. eCollection 2019.

2.

Genome-scale analysis of evolutionary rate and selection in a fast-expanding Spanish cluster of HIV-1 subtype F1.

Patiño-Galindo JÁ, Domínguez F, Cuevas MT, Delgado E, Sánchez M, Pérez-Álvarez L, Thomson MM, Sanjuán R, González-Candelas F, Cuevas JM.

Infect Genet Evol. 2018 Dec;66:43-47. doi: 10.1016/j.meegid.2018.09.008. Epub 2018 Sep 13.

PMID:
30219320
3.

HIV-1 Genetic Diversity in Recently Diagnosed Infections in Moscow: Predominance of AFSU, Frequent Branching in Clusters, and Circulation of the Iberian Subtype G Variant.

Karamov E, Epremyan K, Siniavin A, Zhernov Y, Cuevas MT, Delgado E, Sánchez-Martínez M, Carrera C, Kornilaeva G, Turgiev A, Bacqué J, Pérez-Álvarez L, Thomson MM.

AIDS Res Hum Retroviruses. 2018 Jul;34(7):629-634. doi: 10.1089/AID.2018.0055. Epub 2018 May 15.

PMID:
29587492
4.

Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India.

Alampalli SV, Thomson MM, Sampathkumar R, Sivaraman K, U K J AJ, Dhar C, D Souza G, Berry N, Vyakarnam A.

PLoS One. 2017 Dec 8;12(12):e0188603. doi: 10.1371/journal.pone.0188603. eCollection 2017.

5.

Genetic Diversity of HIV-1 in Tunisia.

El Moussi A, Thomson MM, Delgado E, Cuevas MT, Nasr M, Abid S, Ben Hadj Kacem MA, Benaissa Tiouiri H, Letaief A, Chakroun M, Ben Jemaa M, Hamdouni H, Tej Dellagi R, Kheireddine K, Boutiba I, Pérez-Álvarez L, Slim A.

AIDS Res Hum Retroviruses. 2017 Jan;33(1):77-81. doi: 10.1089/AID.2016.0164. Epub 2016 Sep 19.

PMID:
27473255
6.

Sequence Analysis of In Vivo-Expressed HIV-1 Spliced RNAs Reveals the Usage of New and Unusual Splice Sites by Viruses of Different Subtypes.

Vega Y, Delgado E, de la Barrera J, Carrera C, Zaballos Á, Cuesta I, Mariño A, Ocampo A, Miralles C, Pérez-Castro S, Álvarez H, López-Miragaya I, García-Bodas E, Díez-Fuertes F, Thomson MM.

PLoS One. 2016 Jun 29;11(6):e0158525. doi: 10.1371/journal.pone.0158525. eCollection 2016.

7.

Expression Patterns of Organic Anion Transporting Polypeptides 1B1 and 1B3 Protein in Human Pediatric Liver.

Thomson MM, Hines RN, Schuetz EG, Meibohm B.

Drug Metab Dispos. 2016 Jul;44(7):999-1004. doi: 10.1124/dmd.115.069252. Epub 2016 Apr 20.

8.

Transmission dynamics of HIV-1 subtype B in the Basque Country, Spain.

Patiño-Galindo JA, Thomson MM, Pérez-Álvarez L, Delgado E, Cuevas MT, Fernández-García A, Nájera R, Iribarren JA, Cilla G, López-Soria L, Lezaun MJ, Cisterna R, González-Candelas F; Group of HIV-1 Antiretroviral Resistance Studies in the Basque Country.

Infect Genet Evol. 2016 Jun;40:91-97. doi: 10.1016/j.meegid.2016.02.028. Epub 2016 Feb 26.

PMID:
26921800
9.

Identification of an HIV-1 BG Intersubtype Recombinant Form (CRF73_BG), Partially Related to CRF14_BG, Which Is Circulating in Portugal and Spain.

Fernández-García A, Delgado E, Cuevas MT, Vega Y, Montero V, Sánchez M, Carrera C, López-Álvarez MJ, Miralles C, Pérez-Castro S, Cilla G, Hinojosa C, Pérez-Álvarez L, Thomson MM.

PLoS One. 2016 Feb 22;11(2):e0148549. doi: 10.1371/journal.pone.0148549. eCollection 2016.

10.

Phylogeny and Phylogeography of a Recent HIV-1 Subtype F Outbreak among Men Who Have Sex with Men in Spain Deriving from a Cluster with a Wide Geographic Circulation in Western Europe.

Delgado E, Cuevas MT, Domínguez F, Vega Y, Cabello M, Fernández-García A, Pérez-Losada M, Castro MÁ, Montero V, Sánchez M, Mariño A, Álvarez H, Ordóñez P, Ocampo A, Miralles C, Pérez-Castro S, López-Álvarez MJ, Rodríguez R, Trigo M, Diz-Arén J, Hinojosa C, Bachiller P, Hernáez-Crespo S, Cisterna R, Garduño E, Pérez-Álvarez L, Thomson MM.

PLoS One. 2015 Nov 24;10(11):e0143325. doi: 10.1371/journal.pone.0143325. eCollection 2015.

11.

Epidemiological Surveillance of HIV-1 Transmitted Drug Resistance in Spain in 2004-2012: Relevance of Transmission Clusters in the Propagation of Resistance Mutations.

Vega Y, Delgado E, Fernández-García A, Cuevas MT, Thomson MM, Montero V, Sánchez M, Sánchez AM, Pérez-Álvarez L; Spanish Group for the Study of New HIV-1 Diagnoses in Galicia and Basque Country.

PLoS One. 2015 May 26;10(5):e0125699. doi: 10.1371/journal.pone.0125699. eCollection 2015.

12.

Bayesian phylogeographic analyses clarify the origin of the HIV-1 subtype A variant circulating in former Soviet Union's countries.

Díez-Fuertes F, Cabello M, Thomson MM.

Infect Genet Evol. 2015 Jul;33:197-205. doi: 10.1016/j.meegid.2015.05.003. Epub 2015 May 5.

PMID:
25952568
13.

[Rapid spread of the HIV-1 circular recombinant CRF02-AG in Russia and neighboring countries].

Moskaleychik FF, Laga VY, Delgado E, Vega Y, Fernandez-Garcia A, Perez-Alvarez, Kornilaeva GV, Pronin AY, Zhernov YV, Thomson MM, Bobkova MR, Karamov EV.

Vopr Virusol. 2015;60(6):14-9. Russian.

PMID:
27024911
14.

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies.

Hraber P, Korber BT, Lapedes AS, Bailer RT, Seaman MS, Gao H, Greene KM, McCutchan F, Williamson C, Kim JH, Tovanabutra S, Hahn BH, Swanstrom R, Thomson MM, Gao F, Harris L, Giorgi E, Hengartner N, Bhattacharya T, Mascola JR, Montefiori DC.

J Virol. 2014 Nov;88(21):12623-43. doi: 10.1128/JVI.01705-14. Epub 2014 Aug 20.

15.

Short communication: Molecular epidemiology, phylogeny, and phylodynamics of CRF63_02A1, a recently originated HIV-1 circulating recombinant form spreading in Siberia.

Shcherbakova NS, Shalamova LA, Delgado E, Fernández-García A, Vega Y, Karpenko LI, Ilyichev AA, Sokolov YV, Shcherbakov DN, Pérez-Álvarez L, Thomson MM.

AIDS Res Hum Retroviruses. 2014 Sep;30(9):912-9. doi: 10.1089/AID.2014.0075. Epub 2014 Aug 14.

16.

Predominance of CXCR4 tropism in HIV-1 CRF14_BG strains from newly diagnosed infections.

Pérez-Álvarez L, Delgado E, Vega Y, Montero V, Cuevas T, Fernández-García A, García-Riart B, Pérez-Castro S, Rodríguez-Real R, López-Álvarez MJ, Fernández-Rodríguez R, Lezaun MJ, Ordóñez P, Ramos C, Bereciartua E, Calleja S, Sánchez-García AM, Thomson MM.

J Antimicrob Chemother. 2014 Jan;69(1):246-53. doi: 10.1093/jac/dkt305. Epub 2013 Jul 30.

PMID:
23900735
17.

Identification of new and unusual rev and nef transcripts expressed by an HIV type 1 primary isolate.

Vega Y, Delgado E, Carrera C, Nebreda P, Fernández-García A, Cuevas MT, Pérez-Álvarez L, Thomson MM.

AIDS Res Hum Retroviruses. 2013 Jul;29(7):1075-8. doi: 10.1089/AID.2013.0053. Epub 2013 May 8.

18.

Improvement of HIV-1 coreceptor tropism prediction by employing selected nucleotide positions of the env gene in a Bayesian network classifier.

Díez-Fuertes F, Delgado E, Vega Y, Fernández-García A, Cuevas MT, Pinilla M, García V, Pérez-Álvarez L, Thomson MM.

J Antimicrob Chemother. 2013 Jul;68(7):1471-85. doi: 10.1093/jac/dkt077. Epub 2013 Mar 19.

PMID:
23511232
19.

Identification of new splice sites used for generation of rev transcripts in human immunodeficiency virus type 1 subtype C primary isolates.

Delgado E, Carrera C, Nebreda P, Fernández-García A, Pinilla M, García V, Pérez-Álvarez L, Thomson MM.

PLoS One. 2012;7(2):e30574. doi: 10.1371/journal.pone.0030574. Epub 2012 Feb 17.

20.

Rapid expansion of a HIV-1 subtype F cluster of recent origin among men who have sex with men in Galicia, Spain.

Thomson MM, Fernández-García A, Delgado E, Vega Y, Díez-Fuertes F, Sánchez-Martínez M, Pinilla M, Castro MÁ, Mariño A, Ordóñez P, Ocampo A, da Silva AR, Pérez-Castro S, López-Álvarez MJ, Trigo M, Pérez-Álvarez L.

J Acquir Immune Defic Syndr. 2012 Mar 1;59(3):e49-51. doi: 10.1097/QAI.0b013e3182400fc4. No abstract available.

PMID:
22327248
21.

The analysis of near full-length genome sequences of HIV type 1 subtype A viruses from Russia supports the monophyly of major intrasubtype clusters.

Fernández-García A, Revilla A, Vázquez-de Parga E, Vinogradova A, Rakhmanova A, Karamov E, Carrera C, Delgado E, Pérez-Álvarez L, Nájera R, Osmanov S, Thomson MM.

AIDS Res Hum Retroviruses. 2012 Oct;28(10):1340-3. Epub 2012 Mar 14.

22.

Evaluation of genotypic tropism prediction tests compared with in vitro co-receptor usage in HIV-1 primary isolates of diverse subtypes.

Delgado E, Fernández-García A, Vega Y, Cuevas T, Pinilla M, García V, Sánchez M, González M, Sánchez AM, Thomson MM, Pérez-Álvarez L.

J Antimicrob Chemother. 2012 Jan;67(1):25-31. doi: 10.1093/jac/dkr438. Epub 2011 Oct 18.

PMID:
22010208
23.

Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning.

Thomson MM, Fernández-García A.

Virology. 2011 Jun 20;415(1):30-8. doi: 10.1016/j.virol.2011.03.021. Epub 2011 Apr 20.

24.

The significance of HIV-1 genetic diversity for vaccine development.

Thomson MM.

Curr HIV Res. 2010 Dec;8(8):577-6. No abstract available.

PMID:
21229664
25.

Construction and phenotypic characterization of HIV type 1 functional envelope clones of subtypes G and F.

Revilla A, Delgado E, Christian EC, Dalrymple J, Vega Y, Carrera C, González-Galeano M, Ocampo A, de Castro RO, Lezaún MJ, Rodríguez R, Mariño A, Ordóñez P, Cilla G, Cisterna R, Santamaría JM, Prieto S, Rakhmanova A, Vinogradova A, Ríos M, Pérez-Álvarez L, Nájera R, Montefiori DC, Seaman MS, Thomson MM.

AIDS Res Hum Retroviruses. 2011 Aug;27(8):889-901. doi: 10.1089/AID.2010.0177. Epub 2011 Feb 16.

PMID:
21226626
26.

Identification of unusual and novel HIV type 1 spliced transcripts generated in vivo.

Carrera C, Pinilla M, Pérez-Alvarez L, Thomson MM.

AIDS Res Hum Retroviruses. 2010 Jul;26(7):815-20. doi: 10.1089/aid.2010.0011.

PMID:
20624070
27.

Identification of a new HIV type 1 circulating BF intersubtype recombinant form (CRF47_BF) in Spain.

Fernández-García A, Pérez-Alvarez L, Cuevas MT, Delgado E, Muñoz-Nieto M, Cilla G, Iribarren JA, Pinilla M, Ocampo A, Miralles C, Pérez-Castro S, González-Galeano M, de Castro RO, Trigo M, García V, Sánchez AM, Thomson MM.

AIDS Res Hum Retroviruses. 2010 Jul;26(7):827-32. doi: 10.1089/aid.2009.0311.

PMID:
20618102
28.

Identification of a new HIV type 1 BF intersubtype circulating recombinant form (CRF44_BF) in Chile.

Delgado E, Ríos M, Fernández J, Pérez-Alvarez L, Nájera R, Thomson MM.

AIDS Res Hum Retroviruses. 2010 Jul;26(7):821-6. doi: 10.1089/aid.2010.0006.

PMID:
20618101
29.

Short communication: Molecular epidemiology of HIV type 1 in the Republic of Dagestan, Russian Federation: virtually uniform circulation of subtype A, former Soviet Union variant, with predominance of the V77I(PR) subvariant.

Vinogradova A, Gafurova E, Muñoz-Nieto M, Rakhmanova A, Osmanov S, Thomson MM.

AIDS Res Hum Retroviruses. 2010 Apr;26(4):395-400. doi: 10.1089/aid.2009.0205.

PMID:
20377421
30.

Near full-length genome characterization of a newly identified HIV type 1 subtype F variant circulating in St. Petersburg, Russia.

Fernández-García A, Cuevas MT, Vinogradova A, Rakhmanova A, Pérez-Alvarez L, de Castro RO, Osmanov S, Thomson MM.

AIDS Res Hum Retroviruses. 2009 Nov;25(11):1187-91. doi: 10.1089/aid.2009.0140.

PMID:
19943791
31.

Analysis of HIV-1 pol sequences from Panama: identification of phylogenetic clusters within subtype B and detection of antiretroviral drug resistance mutations.

Ahumada-Ruiz S, Flores-Figueroa D, Toala-González I, Thomson MM.

Infect Genet Evol. 2009 Sep;9(5):933-40. doi: 10.1016/j.meegid.2009.06.013. Epub 2009 Jun 24.

PMID:
19559103
32.

Molecular epidemiology of HIV-1 in St Petersburg, Russia: predominance of subtype A, former Soviet Union variant, and identification of intrasubtype subclusters.

Thomson MM, Vinogradova A, Delgado E, Rakhmanova A, Yakovlev A, Cuevas MT, Muñoz M, Pinilla M, Vega Y, Pérez-Alvarez L, Osmanov S, Nájera R.

J Acquir Immune Defic Syndr. 2009 Jul 1;51(3):332-9. doi: 10.1097/QAI.0b013e31819c1757.

PMID:
19363451
33.

HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain.

Cuevas MT, Muñoz-Nieto M, Thomson MM, Delgado E, Iribarren JA, Cilla G, Fernández-García A, Santamaría JM, Lezaun MJ, Jiménez L, López-Soria LM, Sota M, Contreras G, Nájera R, Pérez-Alvarez L; Spanish Group of HIV-1 Antiretroviral Resistance Studies in the Basque Country.

J Acquir Immune Defic Syndr. 2009 May 1;51(1):99-103. doi: 10.1097/QAI.0b013e318199063e.

PMID:
19282784
34.

New insights into the origin of the HIV type 1 subtype A epidemic in former Soviet Union's countries derived from sequence analyses of preepidemically transmitted viruses.

Thomson MM, de Parga EV, Vinogradova A, Sierra M, Yakovlev A, Rakhmanova A, Delgado E, Casado G, Muñoz M, Carmona R, Vega Y, Pérez-Alvarez L, Contreras G, Medrano L, Osmanov S, Nájera R.

AIDS Res Hum Retroviruses. 2007 Dec;23(12):1599-604.

PMID:
18160020
35.

Increasing HIV-1 genetic diversity in Europe.

Thomson MM, Najera R.

J Infect Dis. 2007 Oct 15;196(8):1120-4. Epub 2007 Sep 13. No abstract available.

PMID:
17955428
36.

Antiretroviral drug resistance and phylogenetic diversity of HIV-1 in Chile.

Ríos M, Delgado E, Pérez-Alvarez L, Fernández J, Gálvez P, de Parga EV, Yung V, Thomson MM, Nájera R.

J Med Virol. 2007 Jun;79(6):647-56.

PMID:
17457921
37.

Genotypic resistance to antiretroviral drugs in patients infected with several HIV type 1 genetic forms in Cuba.

Pérez L, Alvarez LP, Carmona R, Aragonés C, Delgado E, Thomson MM, González Z, Contreras G, Pérez J, Nájera R.

AIDS Res Hum Retroviruses. 2007 Mar;23(3):407-14.

PMID:
17411374
38.

Identification of 3 phylogenetically related HIV-1 BG intersubtype circulating recombinant forms in Cuba.

Sierra M, Thomson MM, Posada D, Pérez L, Aragonés C, González Z, Pérez J, Casado G, Nájera R.

J Acquir Immune Defic Syndr. 2007 Jun 1;45(2):151-60.

PMID:
17356464
39.

HIV Type 1 molecular epidemiology in cuba: high genetic diversity, frequent mosaicism, and recent expansion of BG intersubtype recombinant forms.

Pérez L, Thomson MM, Bleda MJ, Aragonés C, González Z, Pérez J, Sierra M, Casado G, Delgado E, Nájera R.

AIDS Res Hum Retroviruses. 2006 Aug;22(8):724-33. Erratum in: AIDS Res Hum Retroviruses. 2006 Nov;22(11):1198.

PMID:
16910827
40.

Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update.

Thomson MM, Nájera R.

AIDS Rev. 2005 Oct-Dec;7(4):210-24. Review.

PMID:
16425961
41.

Identification of a novel HIV-1 circulating ADG intersubtype recombinant form (CRF19_cpx) in Cuba.

Casado G, Thomson MM, Sierra M, Nájera R.

J Acquir Immune Defic Syndr. 2005 Dec 15;40(5):532-7.

PMID:
16284528
42.

Analysis of drug resistance-associated mutations in treatment-naïve individuals infected with different genetic forms of HIV-1 circulating in countries of the former Soviet Union.

Vázquez de Parga E, Rakhmanova A, Pérez-Alvarez L, Vinogradova A, Delgado E, Thomson MM, Casado G, Sierra M, Muñoz M, Carmona R, Vega Y, Contreras G, Medrano L, Osmanov S, Nájera R.

J Med Virol. 2005 Nov;77(3):337-44.

PMID:
16173024
43.

Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba.

Thomson MM, Casado G, Posada D, Sierra M, Nájera R.

AIDS. 2005 Jul 22;19(11):1155-63.

PMID:
15990568
44.

The analysis of near full-length genome sequences of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Chile, Venezuela and Spain reveals their relationship to diverse lineages of recombinant viruses related to CRF12_BF.

Sierra M, Thomson MM, Ríos M, Casado G, Castro RO, Delgado E, Echevarría G, Muñoz M, Colomina J, Carmona R, Vega Y, Parga EV, Medrano L, Pérez-Alvarez L, Contreras G, Nájera R.

Infect Genet Evol. 2005 Apr;5(3):209-17. Epub 2004 Dec 7.

PMID:
15737911
45.

IL-7 is a potent and proviral strain-specific inducer of latent HIV-1 cellular reservoirs of infected individuals on virally suppressive HAART.

Wang FX, Xu Y, Sullivan J, Souder E, Argyris EG, Acheampong EA, Fisher J, Sierra M, Thomson MM, Najera R, Frank I, Kulkosky J, Pomerantz RJ, Nunnari G.

J Clin Invest. 2005 Jan;115(1):128-37.

46.

Analysis of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF.

Thomson MM, Sierra M, Tanuri A, May S, Casado G, Manjón N, Nájera R.

AIDS Res Hum Retroviruses. 2004 Oct;20(10):1126-33.

PMID:
15585105
47.

High incidence of non-B and recombinant HIV-1 strains in newly diagnosed patients in Galicia, Spain: study of genotypic resistance.

Pérez-Alvarez L, Carmona R, Muñoz M, Delgado E, Thomson MM, Contreras G, Pedreira JD, Rodríguez Real R, Vázquez de Parga E, Medrano L, Taboada JA, Nájera R; Spanish Group for Antiretroviral Resistance Studies in Galicia.

Antivir Ther. 2003 Aug;8(4):355-60.

PMID:
14518705
48.

Near full-length genome characterization of an HIV type 1 CRF05_DF virus from Spain.

Casado G, Thomson MM, Delgado E, Sierra M, Vázquez-De Parga E, Pérez-Alvarez L, Ocampo A, Nájera R.

AIDS Res Hum Retroviruses. 2003 Aug;19(8):719-25.

PMID:
14506788
49.

Primary resistance mutations to fusion inhibitors and polymorphisms in gp41 sequences of HIV-1 non-B subtypes and recombinants.

Villahermosa ML, Perez-Alvarez L, Carmona R, Cuevas MT, Thomson MM, Medrano L, Vazquez de Parga E, Delgado E, Pedreira JD, Nájera R.

AIDS. 2003 May 2;17(7):1083-6.

PMID:
12700461
50.

Genetic recombination and its role in the development of the HIV-1 pandemic.

Nájera R, Delgado E, Pérez-Alvarez L, Thomson MM.

AIDS. 2002;16 Suppl 4:S3-16. Review. No abstract available.

PMID:
12698994

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