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Items: 46

1.

Pleural infection: a retrospective study of clinical outcome and the correlation to known etiology, co-morbidity and treatment factors.

Meyer CN, Armbruster K, Kemp M, Thomsen TR, Dessau RB; Danish Pleural Empyema group.

BMC Pulm Med. 2018 Oct 12;18(1):160. doi: 10.1186/s12890-018-0726-1.

2.

Next generation microbiology and cystic fibrosis diagnostics: are we there yet?

Moser C, Thomsen TR, Høiby N.

Curr Opin Pulm Med. 2018 Nov;24(6):599-605. doi: 10.1097/MCP.0000000000000516. Review.

PMID:
30074508
3.

Preclinical evaluation of potential infection-imaging probe [68 Ga]Ga-DOTA-K-A9 in sterile and infectious inflammation.

Nielsen KM, Jørgensen NP, Kyneb MH, Borghammer P, Meyer RL, Thomsen TR, Bender D, Jensen SB, Nielsen OL, Alstrup AKO.

J Labelled Comp Radiopharm. 2018 May 23. doi: 10.1002/jlcr.3640. [Epub ahead of print]

PMID:
29790580
4.

Differential Contributions of Specimen Types, Culturing, and 16S rRNA Sequencing in Diagnosis of Prosthetic Joint Infections.

Larsen LH, Khalid V, Xu Y, Thomsen TR, Schønheyder HC; the PRIS Study Group.

J Clin Microbiol. 2018 Apr 25;56(5). pii: e01351-17. doi: 10.1128/JCM.01351-17. Print 2018 May.

5.

Microbiological diagnosis of device-related biofilm infections.

Xu Y, Larsen LH, Lorenzen J, Hall-Stoodley L, Kikhney J, Moter A, Thomsen TR.

APMIS. 2017 Apr;125(4):289-303. doi: 10.1111/apm.12676. Review.

PMID:
28407422
6.

Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections.

Rudkjøbing VB, Thomsen TR, Xu Y, Melton-Kreft R, Ahmed A, Eickhardt S, Bjarnsholt T, Poulsen SS, Nielsen PH, Earl JP, Ehrlich GD, Moser C.

BMC Infect Dis. 2016 Nov 8;16(1):652.

7.

Epidural Spinal Cord Stimulation: A Novel Therapy in the Treatment of Restless Legs Syndrome.

Holland MT, Rettenmaier LA, Flouty OE, Thomsen TR, Jerath NU, Reddy CG.

World Neurosurg. 2016 Aug;92:582.e15-582.e18. doi: 10.1016/j.wneu.2016.05.077. Epub 2016 Jun 3.

PMID:
27268311
8.

In vivo gene expression in a Staphylococcus aureus prosthetic joint infection characterized by RNA sequencing and metabolomics: a pilot study.

Xu Y, Maltesen RG, Larsen LH, Schønheyder HC, Le VQ, Nielsen JL, Nielsen PH, Thomsen TR, Nielsen KL.

BMC Microbiol. 2016 May 5;16:80. doi: 10.1186/s12866-016-0695-6.

9.

High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.

McIlroy SJ, Lapidus A, Thomsen TR, Han J, Haynes M, Lobos E, Huntemann M, Pati A, Ivanova NN, Markowitz V, Verbarg S, Woyke T, Klenk HP, Kyrpides N, Nielsen PH.

Stand Genomic Sci. 2015 Feb 27;10:23. doi: 10.1186/s40793-015-0013-1. eCollection 2015.

10.

Recommendations for optimal detection and identification of Actinobaculum schaalii in urine.

Bank S, Cattoir V, Lienhard R, Grisold AJ, Thomsen TR, Reinhard M, Olsen AB, Christensen JJ, Søby KM, Prag J.

APMIS. 2014 Oct;122(10):1043-4. No abstract available.

PMID:
25356477
11.

Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420.

Kristiansen R, Dueholm MS, Bank S, Nielsen PH, Karst SM, Cattoir V, Lienhard R, Grisold AJ, Olsen AB, Reinhard M, Søby KM, Christensen JJ, Prag J, Thomsen TR.

Genome Announc. 2014 Sep 4;2(5). pii: e00880-14. doi: 10.1128/genomeA.00880-14.

12.

'All in a box' a concept for optimizing microbiological diagnostic sampling in prosthetic joint infections.

Larsen LH, Xu Y, Simonsen O, Pedersen C, Schønheyder HC, Thomsen TR; PRIS Study Group.

BMC Res Notes. 2014 Jul 3;7:418. doi: 10.1186/1756-0500-7-418.

13.

Phase I/II randomized trial of aerobic exercise in Parkinson disease in a community setting.

Uc EY, Doerschug KC, Magnotta V, Dawson JD, Thomsen TR, Kline JN, Rizzo M, Newman SR, Mehta S, Grabowski TJ, Bruss J, Blanchette DR, Anderson SW, Voss MW, Kramer AF, Darling WG.

Neurology. 2014 Jul 29;83(5):413-25. doi: 10.1212/WNL.0000000000000644. Epub 2014 Jul 2.

14.

An exploratory study of microbial diversity in sinus infections of cystic fibrosis patients by molecular methods.

Rudkjøbing VB, Aanaes K, Wolff TY, von Buchwald C, Johansen HK, Thomsen TR.

J Cyst Fibros. 2014 Dec;13(6):645-52. doi: 10.1016/j.jcf.2014.02.008. Epub 2014 Mar 11.

15.

Direct sequencing and RipSeq interpretation as a tool for identification of polymicrobial infections.

Wolff TY, Eickhardt S, Björnsdottir MK, Moser C, Bjarnsholt T, Høiby N, Thomsen TR.

J Clin Microbiol. 2013 Apr;51(4):1281-4. doi: 10.1128/JCM.00190-13. Epub 2013 Jan 30.

16.

Culture-dependent and -independent investigations of microbial diversity on urinary catheters.

Xu Y, Moser C, Al-Soud WA, Sørensen S, Høiby N, Nielsen PH, Thomsen TR.

J Clin Microbiol. 2012 Dec;50(12):3901-8. doi: 10.1128/JCM.01237-12. Epub 2012 Sep 26.

17.

Bacterial diversity in suspected prosthetic joint infections: an exploratory study using 16S rRNA gene analysis.

Xu Y, Rudkjøbing VB, Simonsen O, Pedersen C, Lorenzen J, Schønheyder HC, Nielsen PH, Thomsen TR.

FEMS Immunol Med Microbiol. 2012 Jul;65(2):291-304. doi: 10.1111/j.1574-695X.2012.00949.x. Epub 2012 Mar 22.

18.

The microorganisms in chronically infected end-stage and non-end-stage cystic fibrosis patients.

Rudkjøbing VB, Thomsen TR, Alhede M, Kragh KN, Nielsen PH, Johansen UR, Givskov M, Høiby N, Bjarnsholt T.

FEMS Immunol Med Microbiol. 2012 Jul;65(2):236-44. doi: 10.1111/j.1574-695X.2011.00925.x. Epub 2012 Jan 23.

19.

True microbiota involved in chronic lung infection of cystic fibrosis patients found by culturing and 16S rRNA gene analysis.

Rudkjøbing VB, Thomsen TR, Alhede M, Kragh KN, Nielsen PH, Johansen UR, Givskov M, Høiby N, Bjarnsholt T.

J Clin Microbiol. 2011 Dec;49(12):4352-5. doi: 10.1128/JCM.06092-11. Epub 2011 Oct 19.

20.

Detection of microbial diversity in endocarditis using cultivation-independent molecular techniques.

Wolff TY, Moser C, Bundgaard H, Høiby N, Nielsen PH, Thomsen TR.

Scand J Infect Dis. 2011 Dec;43(11-12):857-69. doi: 10.3109/00365548.2011.598877. Epub 2011 Aug 26.

PMID:
21867468
21.

Eikelboom's morphotype 0803 in activated sludge belongs to the genus Caldilinea in the phylum Chloroflexi.

Kragelund C, Thomsen TR, Mielczarek AT, Nielsen PH.

FEMS Microbiol Ecol. 2011 Jun;76(3):451-62. doi: 10.1111/j.1574-6941.2011.01065.x. Epub 2011 Mar 14.

22.

Biofilms in chronic infections - a matter of opportunity - monospecies biofilms in multispecies infections.

Burmølle M, Thomsen TR, Fazli M, Dige I, Christensen L, Homøe P, Tvede M, Nyvad B, Tolker-Nielsen T, Givskov M, Moser C, Kirketerp-Møller K, Johansen HK, Høiby N, Jensen PØ, Sørensen SJ, Bjarnsholt T.

FEMS Immunol Med Microbiol. 2010 Aug;59(3):324-36. doi: 10.1111/j.1574-695X.2010.00714.x. Epub 2010 Jun 7. Review.

23.

Juvenile parkinsonism: epidemiology, diagnosis and treatment.

Thomsen TR, Rodnitzky RL.

CNS Drugs. 2010 Jun;24(6):467-77. doi: 10.2165/11533130-000000000-00000. Review.

PMID:
20443646
24.

The bacteriology of chronic venous leg ulcer examined by culture-independent molecular methods.

Thomsen TR, Aasholm MS, Rudkjøbing VB, Saunders AM, Bjarnsholt T, Givskov M, Kirketerp-Møller K, Nielsen PH.

Wound Repair Regen. 2010 Jan-Feb;18(1):38-49. doi: 10.1111/j.1524-475X.2009.00561.x.

PMID:
20082680
25.

Impact of standard of care for psychosis in Parkinson disease.

Thomsen TR, Panisset M, Suchowersky O, Goodridge A, Mendis T, Lang AE.

J Neurol Neurosurg Psychiatry. 2008 Dec;79(12):1413-5. doi: 10.1136/jnnp.2008.153163. No abstract available.

PMID:
19010958
26.

Use of cultivation-dependent and -independent techniques to assess contamination of central venous catheters: a pilot study.

Larsen MK, Thomsen TR, Moser C, Høiby N, Nielsen PH.

BMC Clin Pathol. 2008 Oct 28;8:10. doi: 10.1186/1472-6890-8-10.

27.

Identity, abundance and ecophysiology of filamentous bacteria belonging to the Bacteroidetes present in activated sludge plants.

Kragelund C, Levantesi C, Borger A, Thelen K, Eikelboom D, Tandoi V, Kong Y, Krooneman J, Larsen P, Thomsen TR, Nielsen PH.

Microbiology. 2008 Mar;154(Pt 3):886-94. doi: 10.1099/mic.0.2007/011684-0.

PMID:
18310034
28.

Identification and ecophysiological characterization of epiphytic protein-hydrolyzing saprospiraceae ("Candidatus Epiflobacter" spp.) in activated sludge.

Xia Y, Kong Y, Thomsen TR, Halkjaer Nielsen P.

Appl Environ Microbiol. 2008 Apr;74(7):2229-38. doi: 10.1128/AEM.02502-07. Epub 2008 Feb 8.

29.

Ipratropium bromide spray as treatment for sialorrhea in Parkinson's disease.

Thomsen TR, Galpern WR, Asante A, Arenovich T, Fox SH.

Mov Disord. 2007 Nov 15;22(15):2268-73.

PMID:
17876852
30.

Ecophysiology of mycolic acid-containing Actinobacteria (Mycolata) in activated sludge foams.

Kragelund C, Remesova Z, Nielsen JL, Thomsen TR, Eales K, Seviour R, Wanner J, Nielsen PH.

FEMS Microbiol Ecol. 2007 Jul;61(1):174-84. Epub 2007 Apr 27.

31.

Ecophysiology of abundant denitrifying bacteria in activated sludge.

Thomsen TR, Kong Y, Nielsen PH.

FEMS Microbiol Ecol. 2007 Jun;60(3):370-82. Epub 2007 Mar 28.

32.

Identity, abundance and ecophysiology of filamentous Chloroflexi species present in activated sludge treatment plants.

Kragelund C, Levantesi C, Borger A, Thelen K, Eikelboom D, Tandoi V, Kong Y, van der Waarde J, Krooneman J, Rossetti S, Thomsen TR, Nielsen PH.

FEMS Microbiol Ecol. 2007 Mar;59(3):671-82.

33.

Diversity of sulfate-reducing bacteria from an extreme hypersaline sediment, Great Salt Lake (Utah).

Kjeldsen KU, Loy A, Jakobsen TF, Thomsen TR, Wagner M, Ingvorsen K.

FEMS Microbiol Ecol. 2007 May;60(2):287-98.

34.

Ecophysiology of different filamentous Alphaproteobacteria in industrial wastewater treatment plants.

Kragelund C, Kong Y, van der Waarde J, Thelen K, Eikelboom D, Tandoi V, Thomsen TR, Nielsen PH.

Microbiology. 2006 Oct;152(Pt 10):3003-12.

PMID:
17005981
35.

Meganema perideroedes gen. nov., sp. nov., a filamentous alphaproteobacterium from activated sludge.

Thomsen TR, Blackall LL, de Muro MA, Nielsen JL, Nielsen PH.

Int J Syst Evol Microbiol. 2006 Aug;56(Pt 8):1865-8.

PMID:
16902022
36.

Floc-forming properties of polyphosphate accumulating organisms in activated sludge.

Larsen P, Eriksen PS, Lou MA, Thomsen TR, Kong YH, Nielsen JL, Nielsen PH.

Water Sci Technol. 2006;54(1):257-65.

PMID:
16898159
37.

Identity, abundance and physiology of Aquaspirillum-related filamentous bacteria in activated sludge.

Thomsen TR, Kragelund C, Nielsen PH.

Water Sci Technol. 2006;54(1):237-45.

PMID:
16898157
38.

Ecophysiology of the filamentous Alphaproteobacterium Meganema perideroedes in activated sludge.

Kragelund C, Nielsen JL, Thomsen TR, Nielsen PH.

FEMS Microbiol Ecol. 2005 Sep 1;54(1):111-22.

39.

Microbial diversity in biofilms from corroding heating systems.

Kjellerup BV, Thomsen TR, Nielsen JL, Olesen BH, Frølund B, Nielsen PH.

Biofouling. 2005;21(1):19-29.

PMID:
16019388
40.

Monitoring of microbial souring in chemically treated, produced-water biofilm systems using molecular techniques.

Kjellerup BV, Veeh RH, Sumithraratne P, Thomsen TR, Buckingham-Meyer K, Frølund B, Sturman P.

J Ind Microbiol Biotechnol. 2005 Apr;32(4):163-70. Epub 2005 Apr 21.

PMID:
15843975
41.

Variations in microcolony strength of probe-defined bacteria in activated sludge flocs.

Klausen MM, Thomsen TR, Nielsen JL, Mikkelsen LH, Nielsen PH.

FEMS Microbiol Ecol. 2004 Nov 1;50(2):123-32. doi: 10.1016/j.femsec.2004.06.005.

42.

Bacterial composition of activated sludge--importance for floc and sludge properties.

Nielsen PH, Thomsen TR, Nielsen JL.

Water Sci Technol. 2004;49(10):51-8.

PMID:
15259937
43.

Micromanipulation and further identification of FISH-labelled microcolonies of a dominant denitrifying bacterium in activated sludge.

Thomsen TR, Nielsen JL, Ramsing NB, Nielsen PH.

Environ Microbiol. 2004 May;6(5):470-9.

PMID:
15049920
44.

In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth.

Thomsen TR, Kjellerup BV, Nielsen JL, Hugenholtz P, Nielsen PH.

Environ Microbiol. 2002 Jul;4(7):383-91.

PMID:
12123474
45.
46.

Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment.

Thomsen TR, Finster K, Ramsing NB.

Appl Environ Microbiol. 2001 Apr;67(4):1646-56.

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