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Items: 1 to 50 of 193

1.

[PROVISIONAL] Genome sequence of Shewanella corallii strain A687 isolated from pufferfish (Sphoeroides spengleri).

Azevedo GPR, Paz PHCD, Mattsson HK, Moreira APB, Leomil L, Calegário G, Appolinario L, Vidal L, Silva BS, Tonon LAC, Tschoeke DA, Garcia GD, Thompson FL, Thompson CC.

Genet Mol Biol. 2019 Sep 2. pii: S1415-47572019005041102. doi: 10.1590/1678-4685-GMB-2018-0314. [Epub ahead of print]

2.

Modelling the influence of environmental parameters over marine planktonic microbial communities using artificial neural networks.

Coutinho FH, Thompson CC, Cabral AS, Paranhos R, Dutilh BE, Thompson FL.

Sci Total Environ. 2019 Aug 10;677:205-214. doi: 10.1016/j.scitotenv.2019.04.009. Epub 2019 Apr 26.

PMID:
31059870
3.

Genomic basis of antibiotic resistance in Vibrio parahaemolyticus strain JPA1.

Coutinho FH, Tschoeke DA, Clementino MM, Thompson CC, Thompson FL.

Mem Inst Oswaldo Cruz. 2019;114:e190053. doi: 10.1590/0074-02760190053. Epub 2019 Apr 25.

4.

"Candidatus Colwellia aromaticivorans" sp. nov., "Candidatus Halocyntiibacter alkanivorans" sp. nov., and "Candidatus Ulvibacter alkanivorans" sp. nov. Genome Sequences.

Campeão ME, Swings J, Silva BS, Otsuki K, Thompson FL, Thompson CC.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00086-19. doi: 10.1128/MRA.00086-19.

5.

Metagenomic Analysis of the Whole Gut Microbiota in Brazilian Termitidae Termites Cornitermes cumulans, Cyrilliotermes strictinasus, Syntermes dirus, Nasutitermes jaraguae, Nasutitermes aquilinus, Grigiotermes bequaerti, and Orthognathotermes mirim.

Grieco MB, Lopes FAC, Oliveira LS, Tschoeke DA, Popov CC, Thompson CC, Gonçalves LC, Constantino R, Martins OB, Kruger RH, de Souza W, Thompson FL.

Curr Microbiol. 2019 Jun;76(6):687-697. doi: 10.1007/s00284-019-01662-3. Epub 2019 Apr 5.

PMID:
30953134
6.

Halomonas coralii sp. nov. Isolated from Mussismilia braziliensis.

Vidal LMR, Gonçalves A, Venas TM, Campeão ME, Calegario G, Walter JM, Silva BS, Garcia GD, Tschoeke DA, Swings J, Thompson FL, Thompson CC.

Curr Microbiol. 2019 Jun;76(6):678-680. doi: 10.1007/s00284-019-01674-z. Epub 2019 Apr 4.

PMID:
30949804
7.

Metagenomics sheds light on the metabolic repertoire of oil-biodegrading microbes of the South Atlantic Ocean.

Appolinario LR, Tschoeke D, Paixão RVS, Venas T, Calegario G, Leomil L, Silva BS, Thompson CC, Thompson FL.

Environ Pollut. 2019 Jun;249:295-304. doi: 10.1016/j.envpol.2019.03.007. Epub 2019 Mar 6.

PMID:
30901643
8.

Insights on the freshwater microbiomes metabolic changes associated with the world's largest mining disaster.

Cordeiro MC, Garcia GD, Rocha AM, Tschoeke DA, Campeão ME, Appolinario LR, Soares AC, Leomil L, Froes A, Bahiense L, Rezende CE, de Almeida MG, Rangel TP, De Oliveira BCV, de Almeida DQR, Thompson MC, Thompson CC, Thompson FL.

Sci Total Environ. 2019 Mar 1;654:1209-1217. doi: 10.1016/j.scitotenv.2018.11.112. Epub 2018 Nov 9.

PMID:
30841395
9.

Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection.

Souza TML, Vieira YR, Delatorre E, Barbosa-Lima G, Luiz RLF, Vizzoni A, Jain K, Miranda MM, Bhuva N, Gogarten JF, Ng J, Thakkar R, Calheiros AS, Monteiro APT, Bozza PT, Bozza FA, Tschoeke DA, Leomil L, Mendonça MCL, Rodrigues CDDS, Torres MC, Filippis AMB, Nogueira RMR, Thompson FL, Lemos C, Durovni B, Cerbino-Neto J, Morel CM, Lipkin WI, Mishra N.

Sci Rep. 2019 Feb 26;9(1):2760. doi: 10.1038/s41598-019-39406-9.

10.

Reply to: Caution in inferring viral strategies from abundance correlations in marine metagenomes.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.

Nat Commun. 2019 Jan 30;10(1):502. doi: 10.1038/s41467-018-08286-4. No abstract available.

11.

Genome Sequences of Vibrio maerlii sp. nov. and Vibrio rhodolitus sp. nov., Isolated from Rhodoliths.

Silva CSF, Walter JM, Nobrega MS, Calegario G, Appolinario LR, Leomil L, Cavalcanti G, Silva BS, Garcia GD, Tschoeke D, Swings J, Thompson FL, Thompson CC.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01039-18. doi: 10.1128/MRA.01039-18. eCollection 2018 Nov.

12.

Metagenomics of Coral Reefs Under Phase Shift and High Hydrodynamics.

Meirelles PM, Soares AC, Oliveira L, Leomil L, Appolinario LR, Francini-Filho RB, de Moura RL, de Barros Almeida RT, Salomon PS, Amado-Filho GM, Kruger R, Siegle E, Tschoeke DA, Kudo I, Mino S, Sawabe T, Thompson CC, Thompson FL.

Front Microbiol. 2018 Oct 4;9:2203. doi: 10.3389/fmicb.2018.02203. eCollection 2018.

13.

Environmental conditions affect activity and associated microorganisms of marine sponges.

Batista D, Costa R, Carvalho AP, Batista WR, Rua CPJ, de Oliveira L, Leomil L, Fróes AM, Thompson FL, Coutinho R, Dobretsov S.

Mar Environ Res. 2018 Nov;142:59-68. doi: 10.1016/j.marenvres.2018.09.020. Epub 2018 Sep 20.

PMID:
30274716
14.

Rhodoliths holobionts in a changing ocean: host-microbes interactions mediate coralline algae resilience under ocean acidification.

Cavalcanti GS, Shukla P, Morris M, Ribeiro B, Foley M, Doane MP, Thompson CC, Edwards MS, Dinsdale EA, Thompson FL.

BMC Genomics. 2018 Sep 24;19(1):701. doi: 10.1186/s12864-018-5064-4.

15.

Metagenomics Sheds Light on the Ecology of Marine Microbes and Their Viruses.

Coutinho FH, Gregoracci GB, Walter JM, Thompson CC, Thompson FL.

Trends Microbiol. 2018 Nov;26(11):955-965. doi: 10.1016/j.tim.2018.05.015. Epub 2018 Jun 21. Review.

PMID:
29937307
16.

Draft Genome Sequence of Muricauda sp. Strain K001 Isolated from a Marine Cyanobacterial Culture.

Vizzotto CS, Lopes FAC, Green SJ, Steindorff AS, Walter JM, Thompson FL, Krüger RH.

Genome Announc. 2018 May 31;6(22). pii: e00451-18. doi: 10.1128/genomeA.00451-18.

17.

An observational clinical case of Zika virus-associated neurological disease is associated with primary IgG response and enhanced TNF levels.

Delatorre E, Miranda M, Tschoeke DA, Carvalho de Sequeira P, Alves Sampaio S, Barbosa-Lima G, Rangel Vieira Y, Leomil L, Bozza FA, Cerbino-Neto J, Bozza PT, Ribeiro Nogueira RM, Brasil P, Thompson FL, de Filippis AMB, Souza TML.

J Gen Virol. 2018 May 17. doi: 10.1099/jgv.0.001080. [Epub ahead of print]

PMID:
29771234
18.

Microbial and Functional Biodiversity Patterns in Sponges that Accumulate Bromopyrrole Alkaloids Suggest Horizontal Gene Transfer of Halogenase Genes.

Rua CPJ, de Oliveira LS, Froes A, Tschoeke DA, Soares AC, Leomil L, Gregoracci GB, Coutinho R, Hajdu E, Thompson CC, Berlinck RGS, Thompson FL.

Microb Ecol. 2018 Oct;76(3):825-838. doi: 10.1007/s00248-018-1172-6. Epub 2018 Mar 15.

PMID:
29546438
19.

Occurrence of Harmful Cyanobacteria in Drinking Water from a Severely Drought-Impacted Semi-arid Region.

Walter JM, Lopes FAC, Lopes-Ferreira M, Vidal LM, Leomil L, Melo F, de Azevedo GS, Oliveira RMS, Medeiros AJ, Melo ASO, De Rezende CE, Tanuri A, Thompson FL.

Front Microbiol. 2018 Feb 28;9:176. doi: 10.3389/fmicb.2018.00176. eCollection 2018.

20.

Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs.

Dias GM, Bidault A, Le Chevalier P, Choquet G, Der Sarkissian C, Orlando L, Medigue C, Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V, Paillard C.

Front Microbiol. 2018 Feb 19;9:227. doi: 10.3389/fmicb.2018.00227. eCollection 2018.

21.

Description of Alteromonas abrolhosensis sp. nov., isolated from sea water of Abrolhos Bank, Brazil.

Nóbrega MS, Silva BS, Leomil L, Tschoeke DA, Campeão ME, Garcia GD, Dias GA, Vieira VV, Thompson CC, Thompson FL.

Antonie Van Leeuwenhoek. 2018 Jul;111(7):1131-1138. doi: 10.1007/s10482-018-1016-x. Epub 2018 Jan 18.

PMID:
29349565
22.

Molecular Mechanisms for Microbe Recognition and Defense by the Red Seaweed Laurencia dendroidea.

de Oliveira LS, Tschoeke DA, Magalhães Lopes ACR, Sudatti DB, Meirelles PM, Thompson CC, Pereira RC, Thompson FL.

mSphere. 2017 Dec 6;2(6). pii: e00094-17. doi: 10.1128/mSphere.00094-17. eCollection 2017 Nov-Dec.

23.

Quantitative Detection of Active Vibrios Associated with White Plague Disease in Mussismilia braziliensis Corals.

Chimetto Tonon LA, Thompson JR, Moreira APB, Garcia GD, Penn K, Lim R, Berlinck RGS, Thompson CC, Thompson FL.

Front Microbiol. 2017 Nov 17;8:2272. doi: 10.3389/fmicb.2017.02272. eCollection 2017.

24.

Ecogenomics and Taxonomy of Cyanobacteria Phylum.

Walter JM, Coutinho FH, Dutilh BE, Swings J, Thompson FL, Thompson CC.

Front Microbiol. 2017 Nov 14;8:2132. doi: 10.3389/fmicb.2017.02132. eCollection 2017.

25.

Corrigendum to "Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan" [Syst. Appl. Microbiol. 39 (5) (2016) 330-335].

Gao F, Al-Saari N, Rohul Amin AKM, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2017 Dec;40(8):516. doi: 10.1016/j.syapm.2017.10.002. No abstract available.

PMID:
29100655
26.

Corrigendum to "Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan" [Syst. Appl. Microbiol. 40 (5) (2017) 290-296].

Amin AKMR, Tanaka M, Al-Saari N, Feng G, Mino S, Ogura Y, Hayashi T, Meirelles PM, Thompson FL, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2018 Jan;41(1):62-63. doi: 10.1016/j.syapm.2017.10.001. Epub 2017 Oct 18. No abstract available.

PMID:
29055507
27.

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon.

Silva BSO, Coutinho FH, Gregoracci GB, Leomil L, de Oliveira LS, Fróes A, Tschoeke D, Soares AC, Cabral AS, Ward ND, Richey JE, Krusche AV, Yager PL, de Rezende CE, Thompson CC, Thompson FL.

mSphere. 2017 Oct 4;2(5). pii: e00366-17. doi: 10.1128/mSphere.00366-17. eCollection 2017 Sep-Oct.

28.

Unlocking Marine Biotechnology in the Developing World.

Thompson CC, Kruger RH, Thompson FL.

Trends Biotechnol. 2017 Dec;35(12):1119-1121. doi: 10.1016/j.tibtech.2017.08.005. Epub 2017 Sep 7. Review.

PMID:
28890138
29.

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.

Nat Commun. 2017 Jul 5;8:15955. doi: 10.1038/ncomms15955.

30.

The Deep-Sea Microbial Community from the Amazonian Basin Associated with Oil Degradation.

Campeão ME, Reis L, Leomil L, de Oliveira L, Otsuki K, Gardinali P, Pelz O, Valle R, Thompson FL, Thompson CC.

Front Microbiol. 2017 Jun 13;8:1019. doi: 10.3389/fmicb.2017.01019. eCollection 2017.

31.

Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan.

Amin AKMR, Tanaka M, Al-Saari N, Feng G, Mino S, Ogura Y, Hayashi T, Meirelles PM, Thompson FL, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2017 Jul;40(5):290-296. doi: 10.1016/j.syapm.2017.04.003. Epub 2017 Jun 16. Erratum in: Syst Appl Microbiol. 2018 Jan;41(1):62-63.

32.

Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle.

Silveira CB, Gregoracci GB, Coutinho FH, Silva GGZ, Haggerty JM, de Oliveira LS, Cabral AS, Rezende CE, Thompson CC, Francini-Filho RB, Edwards RA, Dinsdale EA, Thompson FL.

Front Microbiol. 2017 May 22;8:784. doi: 10.3389/fmicb.2017.00784. eCollection 2017.

33.

Microbial processes driving coral reef organic carbon flow.

Silveira CB, Cavalcanti GS, Walter JM, Silva-Lima AW, Dinsdale EA, Bourne DG, Thompson CC, Thompson FL.

FEMS Microbiol Rev. 2017 Jul 1;41(4):575-595. doi: 10.1093/femsre/fux018.

PMID:
28486655
34.

Development of standard methods for Zika virus propagation, titration, and purification.

Coelho SVA, Neris RLS, Papa MP, Schnellrath LC, Meuren LM, Tschoeke DA, Leomil L, Verçoza BRF, Miranda M, Thompson FL, Da Poian AT, Souza TML, Carneiro FA, Damaso CR, Assunção-Miranda I, de Arruda LB.

J Virol Methods. 2017 Aug;246:65-74. doi: 10.1016/j.jviromet.2017.04.011. Epub 2017 Apr 23.

PMID:
28445704
35.

Corrigendum: The clinically approved antiviral drug sofosbuvir inhibits Zika virus replication.

Sacramento CQ, de Melo GR, de Freitas CS, Rocha N, Hoelz LVB, Miranda M, Fintelman-Rodrigues N, Marttorelli A, Ferreira AC, Barbosa-Lima G, Abrantes JL, Vieira YR, Bastos MM, Volotão EM, Nunes EP, Tschoeke DA, Leomil L, Loiola EC, Trindade P, Rehen SK, Bozza FA, Bozza PT, Boechat N, Thompson FL, de Filippis AMB, Brüning K, Souza TML.

Sci Rep. 2017 Apr 24;7:46772. doi: 10.1038/srep46772. No abstract available.

36.

Virioplankton dynamics are related to eutrophication levels in a tropical urbanized bay.

Cabral AS, Lessa MM, Junger PC, Thompson FL, Paranhos R.

PLoS One. 2017 Mar 31;12(3):e0174653. doi: 10.1371/journal.pone.0174653. eCollection 2017.

37.

Draft Genome Sequence of Pseudoalteromonas sp. Strain PAB 2.2 Isolated from Abrolhos Bank (Brazil).

Silva BS, Nobrega MS, Leomil L, Tschoeke DA, Garcia GD, Dias G, Thompson CC, Thompson FL.

Genome Announc. 2017 Mar 9;5(10). pii: e00016-17. doi: 10.1128/genomeA.00016-17.

38.

Bacterial interactions and implications for oil biodegradation process in mangrove sediments.

Grativol AD, Marchetti AA, Wetler-Tonini RM, Venancio TM, Gatts CE, Thompson FL, Rezende CE.

Mar Pollut Bull. 2017 May 15;118(1-2):221-228. doi: 10.1016/j.marpolbul.2017.02.052. Epub 2017 Mar 1.

PMID:
28259419
39.

Cultures of the Marine Bacterium Pseudovibrio denitrificans Ab134 Produce Bromotyrosine-Derived Alkaloids Previously Only Isolated from Marine Sponges.

Nicacio KJ, Ióca LP, Fróes AM, Leomil L, Appolinario LR, Thompson CC, Thompson FL, Ferreira AG, Williams DE, Andersen RJ, Eustaquio AS, Berlinck RG.

J Nat Prod. 2017 Feb 24;80(2):235-240. doi: 10.1021/acs.jnatprod.6b00838. Epub 2017 Feb 13.

PMID:
28191971
40.

The clinically approved antiviral drug sofosbuvir inhibits Zika virus replication.

Sacramento CQ, de Melo GR, de Freitas CS, Rocha N, Hoelz LV, Miranda M, Fintelman-Rodrigues N, Marttorelli A, Ferreira AC, Barbosa-Lima G, Abrantes JL, Vieira YR, Bastos MM, de Mello Volotão E, Nunes EP, Tschoeke DA, Leomil L, Loiola EC, Trindade P, Rehen SK, Bozza FA, Bozza PT, Boechat N, Thompson FL, de Filippis AM, Brüning K, Souza TM.

Sci Rep. 2017 Jan 18;7:40920. doi: 10.1038/srep40920. Erratum in: Sci Rep. 2017 Apr 24;7:46772.

41.

Pregnant women carrying microcephaly foetuses and Zika virus contain potentially pathogenic microbes and parasites in their amniotic fluid.

Tschoeke DA, de Oliveira LS, Leomil L, Tanuri A, Thompson FL.

BMC Med Genomics. 2017 Jan 11;10(1):5. doi: 10.1186/s12920-016-0242-1.

42.

Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome.

Andrade AC, Fróes A, Lopes FÁC, Thompson FL, Krüger RH, Dinsdale E, Bruce T.

Microb Ecol. 2017 Jul;74(1):89-105. doi: 10.1007/s00248-016-0911-9. Epub 2017 Jan 9.

PMID:
28070679
43.

Cloning and Functional Characterization of Cycloartenol Synthase from the Red Seaweed Laurencia dendroidea.

Calegario G, Pollier J, Arendt P, de Oliveira LS, Thompson C, Soares AR, Pereira RC, Goossens A, Thompson FL.

PLoS One. 2016 Nov 10;11(11):e0165954. doi: 10.1371/journal.pone.0165954. eCollection 2016.

44.

Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features.

Coutinho FH, Dutilh BE, Thompson CC, Thompson FL.

Arch Microbiol. 2016 Dec;198(10):973-986. Epub 2016 Jun 23.

PMID:
27339259
45.

The First Temporal and Spatial Assessment of Vibrio Diversity of the Surrounding Seawater of Coral Reefs in Ishigaki, Japan.

Amin AK, Feng G, Al-Saari N, Meirelles PM, Yamazaki Y, Mino S, Thompson FL, Sawabe T, Sawabe T.

Front Microbiol. 2016 Aug 8;7:1185. doi: 10.3389/fmicb.2016.01185. eCollection 2016.

46.

Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil).

Walter JM, Tschoeke DA, Meirelles PM, de Oliveira L, Leomil L, Tenório M, Valle R, Salomon PS, Thompson CC, Thompson FL.

PLoS One. 2016 Aug 22;11(8):e0161168. doi: 10.1371/journal.pone.0161168. eCollection 2016.

47.

Metaproteomics reveals metabolic transitions between healthy and diseased stony coral Mussismilia braziliensis.

Garcia GD, Santos Ede O, Sousa GV, Zingali RB, Thompson CC, Thompson FL.

Mol Ecol. 2016 Sep;25(18):4632-44. doi: 10.1111/mec.13775. Epub 2016 Sep 6.

PMID:
27492757
48.

Multilocus Sequence Analysis of Close Relatives Vibrio anguillarum and Vibrio ordalii.

Steinum TM, Karataş S, Martinussen NT, Meirelles PM, Thompson FL, Colquhoun DJ.

Appl Environ Microbiol. 2016 Aug 30;82(18):5496-504. doi: 10.1128/AEM.00620-16. Print 2016 Sep 15.

49.

Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.

Gao F, Al-Saari N, Rohul Amin AK, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2016 Jul;39(5):330-5. doi: 10.1016/j.syapm.2016.04.002. Epub 2016 May 24. Erratum in: Syst Appl Microbiol. 2017 Dec;40(8):516.

PMID:
27262360
50.

Erratum to: Description of Endozoicomonas arenosclerae sp. nov. using a genomic taxonomy approach.

Appolinario LR, Tschoeke DA, Rua CP, Venas T, Campeão ME, Amaral GR, Leomil L, de Oliveira L, Vieira VV, Otsuki K, Swings J, Thompson FL, Thompson CC.

Antonie Van Leeuwenhoek. 2016 Jul;109(7):1071-1072. No abstract available.

PMID:
27222035

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