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Development and testing of an 18S rRNA phylogenetic microarray for marine sediments.

Lekang K, Hadziavdic K, Sandnes Skaar K, Jonassen I, Thompson EM, Troedsson C.

J Microbiol Methods. 2018 Oct 15;154:95-106. doi: 10.1016/j.mimet.2018.10.007. [Epub ahead of print]


Development of the house secreting epithelium, a major innovation of tunicate larvaceans, involves multiple homeodomain transcription factors.

Mikhaleva Y, Skinnes R, Sumic S, Thompson EM, Chourrout D.

Dev Biol. 2018 Nov 15;443(2):117-126. doi: 10.1016/j.ydbio.2018.09.006. Epub 2018 Sep 11.


Bevacizumab, irinotecan, temozolomide, tyrosine kinase inhibition, and MEK inhibition are effective against pleomorphic xanthoastrocytoma regardless of V600E status.

Thompson EM, Landi D, Ashley D, Keir ST, Bigner D.

J Neurooncol. 2018 Aug 17. doi: 10.1007/s11060-018-2975-5. [Epub ahead of print]


Sulfonylurea receptor 1 expression is variable in adult and pediatric brain tumors.

Thompson EM, Halvorson K, McLendon R.

Clin Neuropathol. 2018 Sep/Oct;37(5):221-227. doi: 10.5414/NP301102.


Socioeconomic Factors, Perioperative Complications, and 30-Day Readmission Rates Associated With Delayed Cranial Vault Reconstruction for Craniosynostosis.

Sergesketter AR, Elsamadicy AA, Lubkin DT, Kemeny H, Harward SC, Krucoff KB, Krucoff MO, Fuchs H, Thompson EM, Allori AC, Marcus JR, Muh CR.

J Craniofac Surg. 2018 Oct;29(7):1767-1771. doi: 10.1097/SCS.0000000000004787.


Specialization of CDK1 and cyclin B paralog functions in a coenocystic mode of oogenic meiosis.

Feng H, Thompson EM.

Cell Cycle. 2018;17(12):1425-1444. doi: 10.1080/15384101.2018.1486167. Epub 2018 Jul 23.


Complications following pediatric cranioplasty after decompressive craniectomy: a multicenter retrospective study.

Rocque BG, Agee BS, Thompson EM, Piedra M, Baird LC, Selden NR, Greene S, Deibert CP, Hankinson TC, Lew SM, Iskandar BJ, Bragg TM, Frim D, Grant G, Gupta N, Auguste KI, Nikas DC, Vassilyadi M, Muh CR, Wetjen NM, Lam SK.

J Neurosurg Pediatr. 2018 Sep;22(3):225-232. doi: 10.3171/2018.3.PEDS17234. Epub 2018 Jun 8.


Poliovirus Receptor (CD155) Expression in Pediatric Brain Tumors Mediates Oncolysis of Medulloblastoma and Pleomorphic Xanthoastrocytoma.

Thompson EM, Brown M, Dobrikova E, Ramaswamy V, Taylor MD, McLendon R, Sanks J, Chandramohan V, Bigner D, Gromeier M.

J Neuropathol Exp Neurol. 2018 Aug 1;77(8):696-702. doi: 10.1093/jnen/nly045.


Selective Osmotic Shock for Islet Isolation in the Cadaveric Canine Pancreas.

Thompson EM, Sollinger JL, Opara EC, Adin CA.

Cell Transplant. 2018 Mar;27(3):542-550. doi: 10.1177/0963689717752947. Epub 2018 Jun 5.


The clinical importance of medulloblastoma extent of resection: a systematic review.

Thompson EM, Bramall A, Herndon JE 2nd, Taylor MD, Ramaswamy V.

J Neurooncol. 2018 Sep;139(3):523-539. doi: 10.1007/s11060-018-2906-5. Epub 2018 May 23. Review.


Lead pollution recorded in Greenland ice indicates European emissions tracked plagues, wars, and imperial expansion during antiquity.

McConnell JR, Wilson AI, Stohl A, Arienzo MM, Chellman NJ, Eckhardt S, Thompson EM, Pollard AM, Steffensen JP.

Proc Natl Acad Sci U S A. 2018 May 29;115(22):5726-5731. doi: 10.1073/pnas.1721818115. Epub 2018 May 14.


Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate.

Danks GB, Navratilova P, Lenhard B, Thompson EM.

BMC Genomics. 2018 Feb 26;19(1):164. doi: 10.1186/s12864-018-4504-5.


Correction: DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments.

Lanzén A, Lekang K, Jonassen I, Thompson EM, Troedsson C.

PLoS One. 2018 Jan 30;13(1):e0192337. doi: 10.1371/journal.pone.0192337. eCollection 2018.


An endochondral ossification approach to early stage bone repair: Use of tissue-engineered hypertrophic cartilage constructs as primordial templates for weight-bearing bone repair.

Matsiko A, Thompson EM, Lloyd-Griffith C, Cunniffe GM, Vinardell T, Gleeson JP, Kelly DJ, O'Brien FJ.

J Tissue Eng Regen Med. 2018 Apr;12(4):e2147-e2150. doi: 10.1002/term.2638. Epub 2018 Mar 8.


Increased fitness of a key appendicularian zooplankton species under warmer, acidified seawater conditions.

Bouquet JM, Troedsson C, Novac A, Reeve M, Lechtenbörger AK, Massart W, Skaar KS, Aasjord A, Dupont S, Thompson EM.

PLoS One. 2018 Jan 3;13(1):e0190625. doi: 10.1371/journal.pone.0190625. eCollection 2018.


T2-weighted images are superior to other MR image types for the determination of diffuse intrinsic pontine glioma intratumoral heterogeneity.

Harward S, Harrison Farber S, Malinzak M, Becher O, Thompson EM.

Childs Nerv Syst. 2018 Mar;34(3):449-455. doi: 10.1007/s00381-017-3659-8. Epub 2017 Nov 18.


Functional characterization of novel NR5A1 variants reveals multiple complex roles in disorders of sex development.

Robevska G, van den Bergen JA, Ohnesorg T, Eggers S, Hanna C, Hersmus R, Thompson EM, Baxendale A, Verge CF, Lafferty AR, Marzuki NS, Santosa A, Listyasari NA, Riedl S, Warne G, Looijenga L, Faradz S, Ayers KL, Sinclair AH.

Hum Mutat. 2018 Jan;39(1):124-139. doi: 10.1002/humu.23354. Epub 2017 Nov 2.


Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains.

Geisheker MR, Heymann G, Wang T, Coe BP, Turner TN, Stessman HAF, Hoekzema K, Kvarnung M, Shaw M, Friend K, Liebelt J, Barnett C, Thompson EM, Haan E, Guo H, Anderlid BM, Nordgren A, Lindstrand A, Vandeweyer G, Alberti A, Avola E, Vinci M, Giusto S, Pramparo T, Pierce K, Nalabolu S, Michaelson JJ, Sedlacek Z, Santen GWE, Peeters H, Hakonarson H, Courchesne E, Romano C, Kooy RF, Bernier RA, Nordenskjöld M, Gecz J, Xia K, Zweifel LS, Eichler EE.

Nat Neurosci. 2017 Aug;20(8):1043-1051. doi: 10.1038/nn.4589. Epub 2017 Jun 19.


DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments.

Lanzén A, Lekang K, Jonassen I, Thompson EM, Troedsson C.

PLoS One. 2017 Jun 16;12(6):e0179443. doi: 10.1371/journal.pone.0179443. eCollection 2017. Erratum in: PLoS One. 2018 Jan 30;13(1):e0192337.


The role of angiogenesis in Group 3 medulloblastoma pathogenesis and survival.

Thompson EM, Keir ST, Venkatraman T, Lascola C, Yeom KW, Nixon AB, Liu Y, Picard D, Remke M, Bigner DD, Ramaswamy V, Taylor MD.

Neuro Oncol. 2017 Sep 1;19(9):1217-1227. doi: 10.1093/neuonc/nox033.


Growth plate extracellular matrix-derived scaffolds for large bone defect healing.

Cunniffe GM, Díaz-Payno PJ, Ramey JS, Mahon OR, Dunne A, Thompson EM, O'Brien FJ, Kelly DJ.

Eur Cell Mater. 2017 Feb 14;33:130-142. doi: 10.22203/eCM.v033a10.


Sex-specific chromatin landscapes in an ultra-compact chordate genome.

Navratilova P, Danks GB, Long A, Butcher S, Manak JR, Thompson EM.

Epigenetics Chromatin. 2017 Jan 17;10:3. doi: 10.1186/s13072-016-0110-4. eCollection 2017.


Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort.

Eggers S, Sadedin S, van den Bergen JA, Robevska G, Ohnesorg T, Hewitt J, Lambeth L, Bouty A, Knarston IM, Tan TY, Cameron F, Werther G, Hutson J, O'Connell M, Grover SR, Heloury Y, Zacharin M, Bergman P, Kimber C, Brown J, Webb N, Hunter MF, Srinivasan S, Titmuss A, Verge CF, Mowat D, Smith G, Smith J, Ewans L, Shalhoub C, Crock P, Cowell C, Leong GM, Ono M, Lafferty AR, Huynh T, Visser U, Choong CS, McKenzie F, Pachter N, Thompson EM, Couper J, Baxendale A, Gecz J, Wheeler BJ, Jefferies C, MacKenzie K, Hofman P, Carter P, King RI, Krausz C, van Ravenswaaij-Arts CM, Looijenga L, Drop S, Riedl S, Cools M, Dawson A, Juniarto AZ, Khadilkar V, Khadilkar A, Bhatia V, Dũng VC, Atta I, Raza J, Thi Diem Chi N, Hao TK, Harley V, Koopman P, Warne G, Faradz S, Oshlack A, Ayers KL, Sinclair AH.

Genome Biol. 2016 Nov 29;17(1):243.


The clinical and financial impact of a pediatric surgical neuro-oncology clinical trial.

Thompson EM, Gururangan S, Grant G, Mitchell D, Sampson JH.

J Neurooncol. 2017 Mar;132(1):83-87. doi: 10.1007/s11060-016-2338-z. Epub 2016 Nov 18.


Content-Dependent Osteogenic Response of Nanohydroxyapatite: An in Vitro and in Vivo Assessment within Collagen-Based Scaffolds.

Cunniffe GM, Curtin CM, Thompson EM, Dickson GR, O'Brien FJ.

ACS Appl Mater Interfaces. 2016 Sep 14;8(36):23477-88. doi: 10.1021/acsami.6b06596. Epub 2016 Aug 30.


High-throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil-drilling activities.

Lanzén A, Lekang K, Jonassen I, Thompson EM, Troedsson C.

Mol Ecol. 2016 Sep;25(17):4392-406. doi: 10.1111/mec.13761. Epub 2016 Aug 26.


Pachyonychia Congenita: A Spectrum of KRT6a Mutations in Australian Patients.

Forrest CE, Casey G, Mordaunt DA, Thompson EM, Gordon L.

Pediatr Dermatol. 2016 May;33(3):337-42. doi: 10.1111/pde.12841. Epub 2016 Apr 4. Review.


Prognostic value of medulloblastoma extent of resection after accounting for molecular subgroup: a retrospective integrated clinical and molecular analysis.

Thompson EM, Hielscher T, Bouffet E, Remke M, Luu B, Gururangan S, McLendon RE, Bigner DD, Lipp ES, Perreault S, Cho YJ, Grant G, Kim SK, Lee JY, Rao AAN, Giannini C, Li KKW, Ng HK, Yao Y, Kumabe T, Tominaga T, Grajkowska WA, Perek-Polnik M, Low DCY, Seow WT, Chang KTE, Mora J, Pollack IF, Hamilton RL, Leary S, Moore AS, Ingram WJ, Hallahan AR, Jouvet A, Fèvre-Montange M, Vasiljevic A, Faure-Conter C, Shofuda T, Kagawa N, Hashimoto N, Jabado N, Weil AG, Gayden T, Wataya T, Shalaby T, Grotzer M, Zitterbart K, Sterba J, Kren L, Hortobágyi T, Klekner A, László B, Pócza T, Hauser P, Schüller U, Jung S, Jang WY, French PJ, Kros JM, van Veelen MC, Massimi L, Leonard JR, Rubin JB, Vibhakar R, Chambless LB, Cooper MK, Thompson RC, Faria CC, Carvalho A, Nunes S, Pimentel J, Fan X, Muraszko KM, López-Aguilar E, Lyden D, Garzia L, Shih DJH, Kijima N, Schneider C, Adamski J, Northcott PA, Kool M, Jones DTW, Chan JA, Nikolic A, Garre ML, Van Meir EG, Osuka S, Olson JJ, Jahangiri A, Castro BA, Gupta N, Weiss WA, Moxon-Emre I, Mabbott DJ, Lassaletta A, Hawkins CE, Tabori U, Drake J, Kulkarni A, Dirks P, Rutka JT, Korshunov A, Pfister SM, Packer RJ, Ramaswamy V, Taylor MD.

Lancet Oncol. 2016 Apr;17(4):484-495. doi: 10.1016/S1470-2045(15)00581-1. Epub 2016 Mar 12.


Utility of diffusion tensor imaging studies linked to neuronavigation and other modalities in repeat hemispherotomy for intractable epilepsy.

Kiehna EN, Widjaja E, Holowka S, Carter Snead O 3rd, Drake J, Weiss SK, Ochi A, Thompson EM, Go C, Otsubo H, Donner EJ, Rutka JT.

J Neurosurg Pediatr. 2016 Apr;17(4):483-90. doi: 10.3171/2015.7.PEDS15101. Epub 2015 Dec 11.


Increased STAG2 dosage defines a novel cohesinopathy with intellectual disability and behavioral problems.

Kumar R, Corbett MA, Van Bon BW, Gardner A, Woenig JA, Jolly LA, Douglas E, Friend K, Tan C, Van Esch H, Holvoet M, Raynaud M, Field M, Leffler M, Budny B, Wisniewska M, Badura-Stronka M, Latos-Bieleńska A, Batanian J, Rosenfeld JA, Basel-Vanagaite L, Jensen C, Bienek M, Froyen G, Ullmann R, Hu H, Love MI, Haas SA, Stankiewicz P, Cheung SW, Baxendale A, Nicholl J, Thompson EM, Haan E, Kalscheuer VM, Gecz J.

Hum Mol Genet. 2015 Dec 20;24(25):7171-81. doi: 10.1093/hmg/ddv414. Epub 2015 Oct 6.


Trans-splicing in metazoans: A link to translational control?

Danks G, Thompson EM.

Worm. 2015 Jun 17;4(3):e1046030. doi: 10.1080/21624054.2015.1046030. eCollection 2015 Jul-Sep.


Functionalization of a Collagen-Hydroxyapatite Scaffold with Osteostatin to Facilitate Enhanced Bone Regeneration.

Quinlan E, Thompson EM, Matsiko A, O'Brien FJ, López-Noriega A.

Adv Healthc Mater. 2015 Dec 9;4(17):2649-56. doi: 10.1002/adhm.201500439. Epub 2015 Sep 28.


The Koolen-de Vries syndrome: a phenotypic comparison of patients with a 17q21.31 microdeletion versus a KANSL1 sequence variant.

Koolen DA, Pfundt R, Linda K, Beunders G, Veenstra-Knol HE, Conta JH, Fortuna AM, Gillessen-Kaesbach G, Dugan S, Halbach S, Abdul-Rahman OA, Winesett HM, Chung WK, Dalton M, Dimova PS, Mattina T, Prescott K, Zhang HZ, Saal HM, Hehir-Kwa JY, Willemsen MH, Ockeloen CW, Jongmans MC, Van der Aa N, Failla P, Barone C, Avola E, Brooks AS, Kant SG, Gerkes EH, Firth HV, Õunap K, Bird LM, Masser-Frye D, Friedman JR, Sokunbi MA, Dixit A, Splitt M; DDD Study, Kukolich MK, McGaughran J, Coe BP, Flórez J, Nadif Kasri N, Brunner HG, Thompson EM, Gecz J, Romano C, Eichler EE, de Vries BB.

Eur J Hum Genet. 2016 May;24(5):652-9. doi: 10.1038/ejhg.2015.178. Epub 2015 Aug 26.


Porous decellularized tissue engineered hypertrophic cartilage as a scaffold for large bone defect healing.

Cunniffe GM, Vinardell T, Murphy JM, Thompson EM, Matsiko A, O'Brien FJ, Kelly DJ.

Acta Biomater. 2015 Sep;23:82-90. doi: 10.1016/j.actbio.2015.05.031. Epub 2015 May 31.


Co-expressed Cyclin D variants cooperate to regulate proliferation of germline nuclei in a syncytium.

Subramaniam G, Campsteijn C, Thompson EM.

Cell Cycle. 2015;14(13):2129-41. doi: 10.1080/15384101.2015.1041690. Epub 2015 Apr 30.


Long-term controlled delivery of rhBMP-2 from collagen-hydroxyapatite scaffolds for superior bone tissue regeneration.

Quinlan E, Thompson EM, Matsiko A, O'Brien FJ, López-Noriega A.

J Control Release. 2015 Jun 10;207:112-9. doi: 10.1016/j.jconrel.2015.03.028. Epub 2015 Mar 25.


Controlled release of vascular endothelial growth factor from spray-dried alginate microparticles in collagen-hydroxyapatite scaffolds for promoting vascularization and bone repair.

Quinlan E, López-Noriega A, Thompson EM, Hibbitts A, Cryan SA, O'Brien FJ.

J Tissue Eng Regen Med. 2017 Apr;11(4):1097-1109. doi: 10.1002/term.2013. Epub 2015 Mar 18.


Functional specialization of chordate CDK1 paralogs during oogenic meiosis.

Øvrebø JI, Campsteijn C, Kourtesis I, Hausen H, Raasholm M, Thompson EM.

Cell Cycle. 2015;14(6):880-93. doi: 10.1080/15384101.2015.1006000.


A study of the clinical and radiological features in a cohort of 93 patients with a COL2A1 mutation causing spondyloepiphyseal dysplasia congenita or a related phenotype.

Terhal PA, Nievelstein RJ, Verver EJ, Topsakal V, van Dommelen P, Hoornaert K, Le Merrer M, Zankl A, Simon ME, Smithson SF, Marcelis C, Kerr B, Clayton-Smith J, Kinning E, Mansour S, Elmslie F, Goodwin L, van der Hout AH, Veenstra-Knol HE, Herkert JC, Lund AM, Hennekam RC, Mégarbané A, Lees MM, Wilson LC, Male A, Hurst J, Alanay Y, Annerén G, Betz RC, Bongers EM, Cormier-Daire V, Dieux A, David A, Elting MW, van den Ende J, Green A, van Hagen JM, Hertel NT, Holder-Espinasse M, den Hollander N, Homfray T, Hove HD, Price S, Raas-Rothschild A, Rohrbach M, Schroeter B, Suri M, Thompson EM, Tobias ES, Toutain A, Vreeburg M, Wakeling E, Knoers NV, Coucke P, Mortier GR.

Am J Med Genet A. 2015 Mar;167A(3):461-75. doi: 10.1002/ajmg.a.36922. Epub 2015 Jan 21.


Use of lumbar laminoplasty vs. laminotomy for transection of the filum terminale does not affect early complication rates or postoperative course.

Strong MJ, Thompson EM, Roundy N, Selden NR.

Childs Nerv Syst. 2015 Apr;31(4):597-601. doi: 10.1007/s00381-015-2615-8. Epub 2015 Jan 13.


Modulating DNA methylation in activated CD8+ T cells inhibits regulatory T cell-induced binding of Foxp3 to the CD8+ T Cell IL-2 promoter.

Miller MM, Akaronu N, Thompson EM, Hood SF, Fogle JE.

J Immunol. 2015 Feb 1;194(3):990-8. doi: 10.4049/jimmunol.1401762. Epub 2014 Dec 29.


Trans-splicing and operons in metazoans: translational control in maternally regulated development and recovery from growth arrest.

Danks GB, Raasholm M, Campsteijn C, Long AM, Manak JR, Lenhard B, Thompson EM.

Mol Biol Evol. 2015 Mar;32(3):585-99. doi: 10.1093/molbev/msu336. Epub 2014 Dec 17.


Effect of different hydroxyapatite incorporation methods on the structural and biological properties of porous collagen scaffolds for bone repair.

Ryan AJ, Gleeson JP, Matsiko A, Thompson EM, O'Brien FJ.

J Anat. 2015 Dec;227(6):732-45. doi: 10.1111/joa.12262. Epub 2014 Nov 20.


Using a 2-variable method in radionuclide shuntography to predict shunt patency.

Thompson EM, Wagner K, Kronfeld K, Selden NR.

J Neurosurg. 2014 Dec;121(6):1504-7. doi: 10.3171/2014.8.JNS132898. Epub 2014 Sep 26.


In vitro effect of multiple hydrogen peroxide gas plasma sterilizations on the rate of closure of ameroid constrictors.

Thompson EM, Towle Millard HA, Moore GE, Guptill L.

Am J Vet Res. 2014 Oct;75(10):924-8. doi: 10.2460/ajvr.75.10.924.


Genetic heterogeneity in Cornelia de Lange syndrome (CdLS) and CdLS-like phenotypes with observed and predicted levels of mosaicism.

Ansari M, Poke G, Ferry Q, Williamson K, Aldridge R, Meynert AM, Bengani H, Chan CY, Kayserili H, Avci S, Hennekam RC, Lampe AK, Redeker E, Homfray T, Ross A, Falkenberg Smeland M, Mansour S, Parker MJ, Cook JA, Splitt M, Fisher RB, Fryer A, Magee AC, Wilkie A, Barnicoat A, Brady AF, Cooper NS, Mercer C, Deshpande C, Bennett CP, Pilz DT, Ruddy D, Cilliers D, Johnson DS, Josifova D, Rosser E, Thompson EM, Wakeling E, Kinning E, Stewart F, Flinter F, Girisha KM, Cox H, Firth HV, Kingston H, Wee JS, Hurst JA, Clayton-Smith J, Tolmie J, Vogt J, Tatton-Brown K, Chandler K, Prescott K, Wilson L, Behnam M, McEntagart M, Davidson R, Lynch SA, Sisodiya S, Mehta SG, McKee SA, Mohammed S, Holden S, Park SM, Holder SE, Harrison V, McConnell V, Lam WK, Green AJ, Donnai D, Bitner-Glindzicz M, Donnelly DE, Nellåker C, Taylor MS, FitzPatrick DR.

J Med Genet. 2014 Oct;51(10):659-68. doi: 10.1136/jmedgenet-2014-102573. Epub 2014 Aug 14.


Oikopleura dioica culturing made easy: a low-cost facility for an emerging animal model in EvoDevo.

Martí-Solans J, Ferrández-Roldán A, Godoy-Marín H, Badia-Ramentol J, Torres-Aguila NP, Rodríguez-Marí A, Bouquet JM, Chourrout D, Thompson EM, Albalat R, Cañestro C.

Genesis. 2015 Jan;53(1):183-93. doi: 10.1002/dvg.22800. Epub 2014 Jul 21.


Recapitulating endochondral ossification: a promising route to in vivo bone regeneration.

Thompson EM, Matsiko A, Farrell E, Kelly DJ, O'Brien FJ.

J Tissue Eng Regen Med. 2015 Aug;9(8):889-902. doi: 10.1002/term.1918. Epub 2014 Jun 11. Review.


Pathogenic mutations in GLI2 cause a specific phenotype that is distinct from holoprosencephaly.

Bear KA, Solomon BD, Antonini S, Arnhold IJ, França MM, Gerkes EH, Grange DK, Hadley DW, Jääskeläinen J, Paulo SS, Rump P, Stratakis CA, Thompson EM, Willis M, Winder TL, Jorge AA, Roessler E, Muenke M.

J Med Genet. 2014 Jun;51(6):413-8. doi: 10.1136/jmedgenet-2013-102249. Epub 2014 Apr 17.


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