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Suppression of Plant Immunity by Fungal Chitinase-like Effectors.

Fiorin GL, Sanchéz-Vallet A, Thomazella DPT, do Prado PFV, do Nascimento LC, Figueira AVO, Thomma BPHJ, Pereira GAG, Teixeira PJPL.

Curr Biol. 2018 Sep 24;28(18):3023-3030.e5. doi: 10.1016/j.cub.2018.07.055. Epub 2018 Sep 13.


Targeting microbial pathogens.

Thomma BPHJ, Cook DE.

Science. 2018 Jun 8;360(6393):1070-1071. doi: 10.1126/science.aat9343. No abstract available.


Gene cluster conservation provides insight into cercosporin biosynthesis and extends production to the genus Colletotrichum.

de Jonge R, Ebert MK, Huitt-Roehl CR, Pal P, Suttle JC, Spanner RE, Neubauer JD, Jurick WM 2nd, Stott KA, Secor GA, Thomma BPHJ, Van de Peer Y, Townsend CA, Bolton MD.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5459-E5466. doi: 10.1073/pnas.1712798115. Epub 2018 May 29. Erratum in: Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):E8324.


Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance.

Kema GHJ, Mirzadi Gohari A, Aouini L, Gibriel HAY, Ware SB, van den Bosch F, Manning-Smith R, Alonso-Chavez V, Helps J, Ben M'Barek S, Mehrabi R, Diaz-Trujillo C, Zamani E, Schouten HJ, van der Lee TAJ, Waalwijk C, de Waard MA, de Wit PJGM, Verstappen ECP, Thomma BPHJ, Meijer HJG, Seidl MF.

Nat Genet. 2018 Mar;50(3):375-380. doi: 10.1038/s41588-018-0052-9. Epub 2018 Feb 12.


Plant pathogen effector proteins as manipulators of host microbiomes?

Snelders NC, Kettles GJ, Rudd JJ, Thomma BPHJ.

Mol Plant Pathol. 2018 Feb;19(2):257-259. doi: 10.1111/mpp.12628. No abstract available.


Genome Sequence of a Lethal Strain of Xylem-Invading Verticillium nonalfalfae.

Jakše J, Jelen V, Radišek S, de Jonge R, Mandelc S, Majer A, Curk T, Zupan B, Thomma BPHJ, Javornik B.

Genome Announc. 2018 Jan 11;6(2). pii: e01458-17. doi: 10.1128/genomeA.01458-17.


Evolution within the fungal genus Verticillium is characterized by chromosomal rearrangement and gene loss.

Shi-Kunne X, Faino L, van den Berg GCM, Thomma BPHJ, Seidl MF.

Environ Microbiol. 2018 Apr;20(4):1362-1373. doi: 10.1111/1462-2920.14037. Epub 2018 Jan 5.


Tools of the crook- infection strategies of fungal plant pathogens.

Rodriguez-Moreno L, Ebert MK, Bolton MD, Thomma BPHJ.

Plant J. 2018 Feb;93(4):664-674. doi: 10.1111/tpj.13810. Epub 2018 Jan 29.


Transposable Elements Direct The Coevolution between Plants and Microbes.

Seidl MF, Thomma BPHJ.

Trends Genet. 2017 Nov;33(11):842-851. doi: 10.1016/j.tig.2017.07.003. Epub 2017 Aug 8. Review.


Transfer of tomato immune receptor Ve1 confers Ave1-dependent Verticillium resistance in tobacco and cotton.

Song Y, Liu L, Wang Y, Valkenburg DJ, Zhang X, Zhu L, Thomma BPHJ.

Plant Biotechnol J. 2018 Feb;16(2):638-648. doi: 10.1111/pbi.12804. Epub 2017 Nov 15.


The Emerging British Verticillium longisporum Population Consists of Aggressive Brassica Pathogens.

Depotter JRL, Rodriguez-Moreno L, Thomma BPHJ, Wood TA.

Phytopathology. 2017 Nov;107(11):1399-1405. doi: 10.1094/PHYTO-05-17-0184-R. Epub 2017 Aug 28.


A distinct and genetically diverse lineage of the hybrid fungal pathogen Verticillium longisporum population causes stem striping in British oilseed rape.

Depotter JRL, Seidl MF, van den Berg GCM, Thomma BPHJ, Wood TA.

Environ Microbiol. 2017 Oct;19(10):3997-4009. doi: 10.1111/1462-2920.13801. Epub 2017 Jun 27.


Transfer and engineering of immune receptors to improve recognition capacities in crops.

Rodriguez-Moreno L, Song Y, Thomma BP.

Curr Opin Plant Biol. 2017 Aug;38:42-49. doi: 10.1016/j.pbi.2017.04.010. Epub 2017 May 1. Review.


Verticillium dahliae LysM effectors differentially contribute to virulence on plant hosts.

Kombrink A, Rovenich H, Shi-Kunne X, Rojas-Padilla E, van den Berg GC, Domazakis E, de Jonge R, Valkenburg DJ, Sánchez-Vallet A, Seidl MF, Thomma BP.

Mol Plant Pathol. 2017 May;18(4):596-608. doi: 10.1111/mpp.12520. Epub 2017 Feb 14.


Chromatin Biology Impacts Adaptive Evolution of Filamentous Plant Pathogens.

Seidl MF, Cook DE, Thomma BP.

PLoS Pathog. 2016 Nov 3;12(11):e1005920. doi: 10.1371/journal.ppat.1005920. eCollection 2016 Nov. Review. No abstract available.


Host-induced gene silencing compromises Verticillium wilt in tomato and Arabidopsis.

Song Y, Thomma BPHJ.

Mol Plant Pathol. 2018 Jan;19(1):77-89. doi: 10.1111/mpp.12500. Epub 2016 Dec 4.


Bidirectional cross-kingdom RNAi and fungal uptake of external RNAs confer plant protection.

Wang M, Weiberg A, Lin FM, Thomma BP, Huang HD, Jin H.

Nat Plants. 2016 Sep 19;2:16151. doi: 10.1038/nplants.2016.151.


Editorial overview: The fungal infection arena in animal and plant hosts: dynamics at the interface.

Thomma BP, Bignell E.

Curr Opin Microbiol. 2016 Aug;32:v-vii. doi: 10.1016/j.mib.2016.07.001. Epub 2016 Jul 12. No abstract available.


Convergent evolution of filamentous microbes towards evasion of glycan-triggered immunity.

Rovenich H, Zuccaro A, Thomma BP.

New Phytol. 2016 Dec;212(4):896-901. doi: 10.1111/nph.14064. Epub 2016 Jun 22. Review.


Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen.

Faino L, Seidl MF, Shi-Kunne X, Pauper M, van den Berg GC, Wittenberg AH, Thomma BP.

Genome Res. 2016 Aug;26(8):1091-100. doi: 10.1101/gr.204974.116. Epub 2016 Jun 20.


Colletotrichum higginsianum extracellular LysM proteins play dual roles in appressorial function and suppression of chitin-triggered plant immunity.

Takahara H, Hacquard S, Kombrink A, Hughes HB, Halder V, Robin GP, Hiruma K, Neumann U, Shinya T, Kombrink E, Shibuya N, Thomma BP, O'Connell RJ.

New Phytol. 2016 Sep;211(4):1323-37. doi: 10.1111/nph.13994. Epub 2016 May 13.


Interspecific hybridization impacts host range and pathogenicity of filamentous microbes.

Depotter JR, Seidl MF, Wood TA, Thomma BP.

Curr Opin Microbiol. 2016 Aug;32:7-13. doi: 10.1016/j.mib.2016.04.005. Epub 2016 Apr 23. Review.


RNA-sequencing of Cercospora beticola DMI-sensitive and -resistant isolates after treatment with tetraconazole identifies common and contrasting pathway induction.

Bolton MD, Ebert MK, Faino L, Rivera-Varas V, de Jonge R, Van de Peer Y, Thomma BP, Secor GA.

Fungal Genet Biol. 2016 Jul;92:1-13. doi: 10.1016/j.fgb.2016.04.003. Epub 2016 Apr 23.


The Age of Effectors: Genome-Based Discovery and Applications.

Gibriel HA, Thomma BP, Seidl MF.

Phytopathology. 2016 Oct;106(10):1206-1212. Epub 2016 Jun 21.


Meeting Report: Fungal Genomics Meets Social Media: Highlights of the 28th Fungal Genetics Conference at Asilomar.

Momany M, Di Pietro A, Alexander WG, Barker BM, Harb OS, Kamoun S, Martin F, Pires JC, Stajich JE, Thomma BP, Unruh S.

G3 (Bethesda). 2015 Dec;5(12):2523-5. No abstract available.


Rhamnose synthase activity is required for pathogenicity of the vascular wilt fungus Verticillium dahliae.

Santhanam P, Boshoven JC, Salas O, Bowler K, Islam MT, Saber MK, van den Berg GC, Bar-Peled M, Thomma BP.

Mol Plant Pathol. 2017 Apr;18(3):347-362. doi: 10.1111/mpp.12401. Epub 2016 Jun 10.


Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway.

Hanemian M, Barlet X, Sorin C, Yadeta KA, Keller H, Favery B, Simon R, Thomma BP, Hartmann C, Crespi M, Marco Y, Tremousaygue D, Deslandes L.

New Phytol. 2016 Jul;211(2):502-15. doi: 10.1111/nph.13913. Epub 2016 Mar 14.


Alternaria section Alternaria: Species, formae speciales or pathotypes?

Woudenberg JH, Seidl MF, Groenewald JZ, de Vries M, Stielow JB, Thomma BP, Crous PW.

Stud Mycol. 2015 Sep;82:1-21. doi: 10.1016/j.simyco.2015.07.001. Epub 2015 Aug 25.


Broad taxonomic characterization of Verticillium wilt resistance genes reveals an ancient origin of the tomato Ve1 immune receptor.

Song Y, Zhang Z, Seidl MF, Majer A, Jakse J, Javornik B, Thomma BP.

Mol Plant Pathol. 2017 Feb;18(2):195-209. doi: 10.1111/mpp.12390. Epub 2016 Jun 9.


Verticillium longisporum, the invisible threat to oilseed rape and other brassicaceous plant hosts.

Depotter JR, Deketelaere S, Inderbitzin P, Tiedemann AV, Höfte M, Subbarao KV, Wood TA, Thomma BP.

Mol Plant Pathol. 2016 Sep;17(7):1004-16. doi: 10.1111/mpp.12350. Epub 2016 Apr 4. Review.


Worse Comes to Worst: Bananas and Panama Disease--When Plant and Pathogen Clones Meet.

Ordonez N, Seidl MF, Waalwijk C, Drenth A, Kilian A, Thomma BP, Ploetz RC, Kema GH.

PLoS Pathog. 2015 Nov 19;11(11):e1005197. doi: 10.1371/journal.ppat.1005197. eCollection 2015. Review. No abstract available.


Mind the gap; seven reasons to close fragmented genome assemblies.

Thomma BPHJ, Seidl MF, Shi-Kunne X, Cook DE, Bolton MD, van Kan JAL, Faino L.

Fungal Genet Biol. 2016 May;90:24-30. doi: 10.1016/j.fgb.2015.08.010. Epub 2015 Sep 2. Review.


Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.

Faino L, Seidl MF, Datema E, van den Berg GC, Janssen A, Wittenberg AH, Thomma BP.

MBio. 2015 Aug 18;6(4). pii: e00936-15. doi: 10.1128/mBio.00936-15.


Understanding plant immunity as a surveillance system to detect invasion.

Cook DE, Mesarich CH, Thomma BP.

Annu Rev Phytopathol. 2015;53:541-63. doi: 10.1146/annurev-phyto-080614-120114. Epub 2015 Jun 6. Review.


Genomics spurs rapid advances in our understanding of the biology of vascular wilt pathogens in the genus Verticillium.

Klimes A, Dobinson KF, Thomma BP, Klosterman SJ.

Annu Rev Phytopathol. 2015;53:181-98. doi: 10.1146/annurev-phyto-080614-120224. Epub 2015 Jun 3. Review.


Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride.

Shi-Kunne X, Seidl MF, Faino L, Thomma BP.

Genome Announc. 2015 May 7;3(3). pii: e00287-15. doi: 10.1128/genomeA.00287-15.


The battle for chitin recognition in plant-microbe interactions.

Sánchez-Vallet A, Mesters JR, Thomma BP.

FEMS Microbiol Rev. 2015 Mar;39(2):171-83. doi: 10.1093/femsre/fuu003. Epub 2014 Dec 22. Review.


The Genome of the Saprophytic Fungus Verticillium tricorpus Reveals a Complex Effector Repertoire Resembling That of Its Pathogenic Relatives.

Seidl MF, Faino L, Shi-Kunne X, van den Berg GC, Bolton MD, Thomma BP.

Mol Plant Microbe Interact. 2015 Mar;28(3):362-73. doi: 10.1094/MPMI-06-14-0173-R.


PIRIN2 stabilizes cysteine protease XCP2 and increases susceptibility to the vascular pathogen Ralstonia solanacearum in Arabidopsis.

Zhang B, Tremousaygue D, Denancé N, van Esse HP, Hörger AC, Dabos P, Goffner D, Thomma BP, van der Hoorn RA, Tuominen H.

Plant J. 2014 Sep;79(6):1009-19. doi: 10.1111/tpj.12602. Epub 2014 Aug 7.


Mutational analysis of the Ve1 immune receptor that mediates Verticillium resistance in tomato.

Zhang Z, Song Y, Liu CM, Thomma BP.

PLoS One. 2014 Jun 9;9(6):e99511. doi: 10.1371/journal.pone.0099511. eCollection 2014.


Filamentous pathogen effector functions: of pathogens, hosts and microbiomes.

Rovenich H, Boshoven JC, Thomma BP.

Curr Opin Plant Biol. 2014 Aug;20:96-103. doi: 10.1016/j.pbi.2014.05.001. Epub 2014 May 28. Review.


Virus-induced gene silencing and Agrobacterium tumefaciens-mediated transient expression in Nicotiana tabacum.

Zhang Z, Thomma BP.

Methods Mol Biol. 2014;1127:173-81. doi: 10.1007/978-1-62703-986-4_14.


Get your high-quality low-cost genome sequence.

Faino L, Thomma BP.

Trends Plant Sci. 2014 May;19(5):288-91. doi: 10.1016/j.tplants.2014.02.003. Epub 2014 Mar 11.


Sex or no sex: evolutionary adaptation occurs regardless.

Seidl MF, Thomma BP.

Bioessays. 2014 Apr;36(4):335-45. doi: 10.1002/bies.201300155. Epub 2014 Feb 13.


The Brassicaceae-specific EWR1 gene provides resistance to vascular wilt pathogens.

Yadeta KA, Valkenburg DJ, Hanemian M, Marco Y, Thomma BP.

PLoS One. 2014 Feb 5;9(2):e88230. doi: 10.1371/journal.pone.0088230. eCollection 2014.


Functional analysis of the tomato immune receptor Ve1 through domain swaps with its non-functional homolog Ve2.

Fradin EF, Zhang Z, Rovenich H, Song Y, Liebrand TW, Masini L, van den Berg GC, Joosten MH, Thomma BP.

PLoS One. 2014 Feb 5;9(2):e88208. doi: 10.1371/journal.pone.0088208. eCollection 2014.


LysM effectors: secreted proteins supporting fungal life.

Kombrink A, Thomma BP.

PLoS Pathog. 2013;9(12):e1003769. doi: 10.1371/journal.ppat.1003769. Epub 2013 Dec 12. No abstract available.


The heterothallic sugarbeet pathogen Cercospora beticola contains exon fragments of both MAT genes that are homogenized by concerted evolution.

Bolton MD, de Jonge R, Inderbitzin P, Liu Z, Birla K, Van de Peer Y, Subbarao KV, Thomma BP, Secor GA.

Fungal Genet Biol. 2014 Jan;62:43-54. doi: 10.1016/j.fgb.2013.10.011. Epub 2013 Nov 8.


Chaperones of the endoplasmic reticulum are required for Ve1-mediated resistance to Verticillium.

Liebrand TW, Kombrink A, Zhang Z, Sklenar J, Jones AM, Robatzek S, Thomma BP, Joosten MH.

Mol Plant Pathol. 2014 Jan;15(1):109-17. doi: 10.1111/mpp.12071. Epub 2013 Sep 10.


Ratio of mutated versus wild-type coat protein sequences in Pepino mosaic virus determines the nature and severity of yellowing symptoms on tomato plants.

Hasiów-Jaroszewska B, Paeleman A, Ortega-Parra N, Borodynko N, Minicka J, Czerwoniec A, Thomma BP, Hanssen IM.

Mol Plant Pathol. 2013 Dec;14(9):923-33. doi: 10.1111/mpp.12059. Epub 2013 Jul 15.


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