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Items: 1 to 50 of 124

1.

Effect of music intervention on apathy in nursing home residents with dementia.

Tang Q, Zhou Y, Yang S, Thomas WKS, Smith GD, Yang Z, Yuan L, Chung JW.

Geriatr Nurs. 2018 Jul - Aug;39(4):471-476. doi: 10.1016/j.gerinurse.2018.02.003. Epub 2018 Mar 15.

PMID:
29551546
2.

Permanent Draft Genome Sequences for Mesorhizobium sp. Strains LCM 4576, LCM 4577, and ORS3428, Salt-Tolerant, Nitrogen-Fixing Bacteria Isolated from Senegalese Soils.

Diagne N, Swanson E, Pesce C, Fall F, Diouf F, Bakhoum N, Fall D, Faye MN, Oshone R, Simpson S, Morris K, Thomas WK, Moulin L, Diouf D, Tisa LS.

Genome Announc. 2017 Oct 12;5(41). pii: e01154-17. doi: 10.1128/genomeA.01154-17.

3.

Permanent Draft Genome sequence for Frankia sp. strain CcI49, a Nitrogen-Fixing Bacterium Isolated from Casuarina cunninghamiana that Infects Elaeagnaceae.

Mansour S, Swanson E, McNutt Z, Pesce C, Harrington K, Abebe-Alele F, Simpson S, Morris K, Thomas WK, Tisa LS.

J Genomics. 2017 Sep 12;5:119-123. doi: 10.7150/jgen.22138. eCollection 2017.

4.

Permanent Draft Genome Sequence of Photorhabdus temperata Strain Hm, an Entomopathogenic Bacterium Isolated from Nematodes.

Ghazal S, Swanson E, Simpson S, Morris K, Abebe-Akele F, Thomas WK, Khalil KM, Tisa LS.

Genome Announc. 2017 Sep 14;5(37). pii: e00974-17. doi: 10.1128/genomeA.00974-17.

5.

Spatial and temporal variation of intertidal nematodes in the northern Gulf of Mexico after the Deepwater Horizon oil spill.

Brannock PM, Sharma J, Bik HM, Thomas WK, Halanych KM.

Mar Environ Res. 2017 Sep;130:200-212. doi: 10.1016/j.marenvres.2017.07.008. Epub 2017 Jul 6.

PMID:
28781067
6.

Draft Genome Sequence of the Symbiotic Frankia Sp. Strain KB5 Isolated from Root Nodules of Casuarina equisetifolia.

Pesce C, Swanson E, Simpson S, Morris K, Thomas WK, Tisa LS, Sellstedt A.

J Genomics. 2017 Jun 9;5:64-67. doi: 10.7150/jgen.20887. eCollection 2017.

7.

Permanent Draft Genome Sequence for Frankia sp. Strain Cc1.17, a Nitrogen-Fixing Actinobacterium Isolated from Root Nodules of Colletia cruciata.

Swanson E, Oshone R, Nouioui I, Abebe-Akele F, Simpson S, Morris K, Thomas WK, Sen A, Ghodhbane-Gtari F, Gtari M, Tisa LS.

Genome Announc. 2017 Jun 15;5(24). pii: e00530-17. doi: 10.1128/genomeA.00530-17.

8.

Permanent Draft Genome Sequence of Rhizobium sp. Strain LCM 4573, a Salt-Tolerant, Nitrogen-Fixing Bacterium Isolated from Senegalese Soils.

Diagne N, Swanson E, Pesce C, Fall F, Diouf F, Bakhoum N, Fall D, Ndigue Faye M, Oshone R, Simpson S, Morris K, Thomas WK, Moulin L, Diouf D, Tisa LS.

Genome Announc. 2017 May 4;5(18). pii: e00285-17. doi: 10.1128/genomeA.00285-17.

9.

Permanent Draft Genome Sequence of the French Bean Symbiont Rhizobium sp. Strain RSm-3 Isolated from the Eastern Himalayan Region of India.

Rai R, Swanson E, Sarkar I, Lama D, Abebe-Aleke F, Simpson S, Morris K, Thomas WK, Kar P, Gtari M, Sen A, Tisa LS.

Genome Announc. 2017 Apr 13;5(15). pii: e00175-17. doi: 10.1128/genomeA.00175-17.

10.

Permanent Draft Genome Sequences of Three Frankia sp. Strains That Are Atypical, Noninfective, Ineffective Isolates.

Gueddou A, Swanson E, Ktari A, Nouioui I, Hezbri K, Ghodhbane-Gtari F, Simpson S, Morris K, Thomas WK, Sen A, Gtari M, Tisa LS.

Genome Announc. 2017 Apr 13;5(15). pii: e00174-17. doi: 10.1128/genomeA.00174-17.

11.

Permanent Draft Genome Sequence of Ensifer sp. Strain LCM 4579, a Salt-Tolerant, Nitrogen-Fixing Bacterium Isolated from Senegalese Soil.

Diagne N, Swanson E, Pesce C, Fall F, Diouf F, Bakhoum N, Fall D, Ndigue Faye M, Oshone R, Simpson S, Morris K, Thomas WK, Moulin L, Diouf D, Tisa LS.

Genome Announc. 2017 Apr 6;5(14). pii: e00117-17. doi: 10.1128/genomeA.00117-17.

12.

A New Reference Genome Assembly for the Microcrustacean Daphnia pulex.

Ye Z, Xu S, Spitze K, Asselman J, Jiang X, Ackerman MS, Lopez J, Harker B, Raborn RT, Thomas WK, Ramsdell J, Pfrender ME, Lynch M.

G3 (Bethesda). 2017 May 5;7(5):1405-1416. doi: 10.1534/g3.116.038638.

13.

PALADIN: protein alignment for functional profiling whole metagenome shotgun data.

Westbrook A, Ramsdell J, Schuelke T, Normington L, Bergeron RD, Thomas WK, MacManes MD.

Bioinformatics. 2017 May 15;33(10):1473-1478. doi: 10.1093/bioinformatics/btx021.

14.

Genetic drift, selection and the evolution of the mutation rate.

Lynch M, Ackerman MS, Gout JF, Long H, Sung W, Thomas WK, Foster PL.

Nat Rev Genet. 2016 Oct 14;17(11):704-714. doi: 10.1038/nrg.2016.104. Review.

PMID:
27739533
15.

Permanent Draft Genome Sequence of Frankia sp. Strain BR, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina equisetifolia.

D'Angelo T, Oshone R, Abebe-Akele F, Simpson S, Morris K, Thomas WK, Tisa LS.

Genome Announc. 2016 Sep 15;4(5). pii: e01000-16. doi: 10.1128/genomeA.01000-16.

16.

Permanent Draft Genome Sequence for Frankia sp. Strain EI5c, a Single-Spore Isolate of a Nitrogen-Fixing Actinobacterium, Isolated from the Root Nodules of Elaeagnus angustifolia.

D'Angelo T, Oshone R, Abebe-Akele F, Simpson S, Morris K, Thomas WK, Tisa LS.

Genome Announc. 2016 Jul 7;4(4). pii: e00660-16. doi: 10.1128/genomeA.00660-16.

17.

Permanent Draft Genome Sequence of Frankia sp. Strain Allo2, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Allocasuarina.

Oshone R, Ngom M, Abebe-Akele F, Simpson S, Morris K, Sy MO, Champion A, Thomas WK, Tisa LS.

Genome Announc. 2016 May 19;4(3). pii: e00388-16. doi: 10.1128/genomeA.00388-16.

18.

Permanent Draft Genome Sequence for Frankia sp. Strain CeD, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina equistifolia Grown in Senegal.

Ngom M, Oshone R, Hurst SG 4th, Abebe-Akele F, Simpson S, Morris K, Sy MO, Champion A, Thomas WK, Tisa LS.

Genome Announc. 2016 Apr 7;4(2). pii: e00265-16. doi: 10.1128/genomeA.00265-16.

19.

Draft Genome Sequence of Photorhabdus luminescens subsp. laumondii HP88, an Entomopathogenic Bacterium Isolated from Nematodes.

Ghazal S, Oshone R, Simpson S, Morris K, Abebe-Akele F, Thomas WK, Khalil KM, Tisa LS.

Genome Announc. 2016 Mar 17;4(2). pii: e00154-16. doi: 10.1128/genomeA.00154-16.

20.

Mitogenomics reveals high synteny and long evolutionary histories of sympatric cryptic nematode species.

Grosemans T, Morris K, Thomas WK, Rigaux A, Moens T, Derycke S.

Ecol Evol. 2016 Feb 20;6(6):1854-70. doi: 10.1002/ece3.1975. eCollection 2016 Mar.

21.

Coexisting cryptic species of the Litoditis marina complex (Nematoda) show differential resource use and have distinct microbiomes with high intraspecific variability.

Derycke S, De Meester N, Rigaux A, Creer S, Bik H, Thomas WK, Moens T.

Mol Ecol. 2016 May;25(9):2093-110. doi: 10.1111/mec.13597. Epub 2016 Mar 28.

22.

Permanent Draft Genome Sequences for Two Variants of Frankia sp. Strain CpI1, the First Frankia Strain Isolated from Root Nodules of Comptonia peregrina.

Oshone R, Hurst SG 4th, Abebe-Akele F, Simpson S, Morris K, Thomas WK, Tisa LS.

Genome Announc. 2016 Jan 14;4(1). pii: e01588-15. doi: 10.1128/genomeA.01588-15.

23.

Permanent Draft Genome Sequence of Frankia sp. Strain AvcI1, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus viridis subsp. crispa Grown in Canada.

Swanson E, Oshone R, Simpson S, Morris K, Abebe-Akele F, Thomas WK, Tisa LS.

Genome Announc. 2015 Dec 31;3(6). pii: e01511-15. doi: 10.1128/genomeA.01511-15.

24.

Polybrominated Diphenyl Ether (PBDE)-Induced Suppression of Phosphoenolpyruvate Carboxykinase (PEPCK) Decreases Hepatic Glyceroneogenesis and Disrupts Hepatic Lipid Homeostasis.

Cowens KR, Simpson S, Thomas WK, Carey GB.

J Toxicol Environ Health A. 2015;78(23-24):1437-49. doi: 10.1080/15287394.2015.1098580.

PMID:
26692069
25.

Permanent Draft Genome Sequence of Frankia sp. Strain ACN1ag, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus glutinosa.

Swanson E, Oshone R, Simpson S, Morris K, Abebe-Akele F, Thomas WK, Tisa LS.

Genome Announc. 2015 Dec 17;3(6). pii: e01483-15. doi: 10.1128/genomeA.01483-15.

26.

Genome sequence and comparative analysis of a putative entomopathogenic Serratia isolated from Caenorhabditis briggsae.

Abebe-Akele F, Tisa LS, Cooper VS, Hatcher PJ, Abebe E, Thomas WK.

BMC Genomics. 2015 Jul 18;16:531. doi: 10.1186/s12864-015-1697-8.

27.

A Male-Specific Genetic Map of the Microcrustacean Daphnia pulex Based on Single-Sperm Whole-Genome Sequencing.

Xu S, Ackerman MS, Long H, Bright L, Spitze K, Ramsdell JS, Thomas WK, Lynch M.

Genetics. 2015 Sep;201(1):31-8. doi: 10.1534/genetics.115.179028. Epub 2015 Jun 26.

28.

The Mitochondrial Genomes of the Nudibranch Mollusks, Melibe leonina and Tritonia diomedea, and Their Impact on Gastropod Phylogeny.

Sevigny JL, Kirouac LE, Thomas WK, Ramsdell JS, Lawlor KE, Sharifi O, Grewal S, Baysdorfer C, Curr K, Naimie AA, Okamoto K, Murray JA, Newcomb JM.

PLoS One. 2015 May 21;10(5):e0127519. doi: 10.1371/journal.pone.0127519. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0132861.

29.

FlowClus: efficiently filtering and denoising pyrosequenced amplicons.

Gaspar JM, Thomas WK.

BMC Bioinformatics. 2015 Mar 27;16:105. doi: 10.1186/s12859-015-0532-1.

30.

Draft Genome Sequence of Photorhabdus temperata Strain Meg1, an Entomopathogenic Bacterium Isolated from Heterorhabditis megidis Nematodes.

Hurst SG 4th, Ghazal S, Morris K, Abebe-Akele F, Thomas WK, Badr UM, Hussein MA, AbouZaied MA, Khalil KM, Tisa LS.

Genome Announc. 2014 Dec 11;2(6). pii: e01273-14. doi: 10.1128/genomeA.01273-14.

31.

An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits.

Routtu J, Hall MD, Albere B, Beisel C, Bergeron RD, Chaturvedi A, Choi JH, Colbourne J, De Meester L, Stephens MT, Stelzer CP, Solorzano E, Thomas WK, Pfrender ME, Ebert D.

BMC Genomics. 2014 Nov 27;15:1033. doi: 10.1186/1471-2164-15-1033.

32.

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems.

Lallias D, Hiddink JG, Fonseca VG, Gaspar JM, Sung W, Neill SP, Barnes N, Ferrero T, Hall N, Lambshead PJ, Packer M, Thomas WK, Creer S.

ISME J. 2015 May;9(5):1208-21. doi: 10.1038/ismej.2014.213. Epub 2014 Nov 25.

34.

Nematodes from galls on Myrtaceae. VIII. Fergusobia from small galls on shoot buds, with descriptions of four new species.

Davies KA, Bartholomaeus F, Giblin-Davis RM, Ye W, Taylor GS, Thomas WK.

Zootaxa. 2014 Aug 28;3857(1):1-40. doi: 10.11646/zootaxa.3857.1.1.

PMID:
25283095
35.

Draft Genome Sequence of Frankia sp. Strain BMG5.23, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina glauca Grown in Tunisia.

Ghodhbane-Gtari F, Hurst SG 4th, Oshone R, Morris K, Abebe-Akele F, Thomas WK, Ktari A, Salem K, Gtari M, Tisa LS.

Genome Announc. 2014 May 29;2(3). pii: e00520-14. doi: 10.1128/genomeA.00520-14.

36.

Draft Genome Sequence of Frankia sp. Strain Thr, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina cunninghamiana Grown in Egypt.

Hurst SG 4th, Oshone R, Ghodhbane-Gtari F, Morris K, Abebe-Akele F, Thomas WK, Ktari A, Salem K, Mansour S, Gtari M, Tisa LS.

Genome Announc. 2014 May 22;2(3). pii: e00493-14. doi: 10.1128/genomeA.00493-14.

37.

Draft Genome Sequence of Photorhabdus luminescens Strain BA1, an Entomopathogenic Bacterium Isolated from Nematodes Found in Egypt.

Ghazal S, Hurst SG 4th, Morris K, Abebe-Akele F, Thomas WK, Badr UM, Hussein MA, Abouzaied MA, Khalil KM, Tisa LS.

Genome Announc. 2014 May 1;2(2). pii: e00396-14. doi: 10.1128/genomeA.00396-14.

38.

A critique of Rossberg et al.: Noise obscures the genetic signal of meiobiotal ecospecies in ecogenomic datasets.

Morgan MJ, Bass D, Bik H, Birky CW, Blaxter M, Crisp MD, Derycke S, Fitch D, Fontaneto D, Hardy CM, King AJ, Kiontke KC, Moens T, Pawlowski JW, Porazinska D, Tang CQ, Thomas WK, Yeates DK, Creer S.

Proc Biol Sci. 2014 Mar 26;281(1783):20133076. doi: 10.1098/rspb.2013.3076. Print 2014 May 22. No abstract available.

39.

Draft Genome Sequence of Frankia sp. Strain CcI6, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Casuarina cunninghamiana.

Mansour SR, Oshone R, Hurst SG 4th, Morris K, Thomas WK, Tisa LS.

Genome Announc. 2014 Jan 16;2(1). pii: e01205-13. doi: 10.1128/genomeA.01205-13.

40.

The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda.

Schiffer PH, Kroiher M, Kraus C, Koutsovoulos GD, Kumar S, Camps JI, Nsah NA, Stappert D, Morris K, Heger P, Altmüller J, Frommolt P, Nürnberg P, Thomas WK, Blaxter ML, Schierenberg E.

BMC Genomics. 2013 Dec 27;14:923. doi: 10.1186/1471-2164-14-923.

41.

Large-scale detection of in vivo transcription errors.

Gout JF, Thomas WK, Smith Z, Okamoto K, Lynch M.

Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18584-9. doi: 10.1073/pnas.1309843110. Epub 2013 Oct 28.

42.

Intra-genomic variation in the ribosomal repeats of nematodes.

Bik HM, Fournier D, Sung W, Bergeron RD, Thomas WK.

PLoS One. 2013 Oct 11;8(10):e78230. doi: 10.1371/journal.pone.0078230. eCollection 2013.

43.

Comparison and validation of 2 analytical methods for measurement of urinary sucrose and fructose excretion.

Song X, Navarro SL, Diep P, Thomas WK, Razmpoosh EC, Schwarz Y, Wang CY, Kratz M, Neuhouser ML, Lampe JW.

Nutr Res. 2013 Sep;33(9):696-703. doi: 10.1016/j.nutres.2013.05.017. Epub 2013 Jul 3.

44.

Assessing the consequences of denoising marker-based metagenomic data.

Gaspar JM, Thomas WK.

PLoS One. 2013;8(3):e60458. doi: 10.1371/journal.pone.0060458. Epub 2013 Mar 25.

45.

The nature and frequency of chimeras in eukaryotic metagenetic samples.

Porazinska DL, Giblin-Davis RM, Sung W, Thomas WK.

J Nematol. 2012 Mar;44(1):18-25.

46.

Nematodes from galls on Myrtaceae. IV. Fergusobia from flat leaf galls on Eucalyptus and Corymbia, with descriptions of two new species.

Davies KA, Giblin-Davis RM, Ye W, Taylor GS, Thomas WK.

Zootaxa. 2013 Nov 26;3741:151-71. doi: 10.11646/zootaxa.3741.1.5.

PMID:
25112980
47.

Nematodes from galls on Myrtaceae. V. Fergusobia from large multilocular shoot bud galls from Angophora and Eucalyptus in Australia, with descriptions of six new species.

Davies KA, Giblin-Davis RM, Ye W, Lisnawita L, Taylor GS, Thomas WK.

Zootaxa. 2013 Nov 26;3741:101-40. doi: 10.11646/zootaxa.3741.1.3.

PMID:
25112978
48.

Extraordinary genome stability in the ciliate Paramecium tetraurelia.

Sung W, Tucker AE, Doak TG, Choi E, Thomas WK, Lynch M.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19339-44. doi: 10.1073/pnas.1210663109. Epub 2012 Nov 5.

49.

DNA base identification by electron microscopy.

Bell DC, Thomas WK, Murtagh KM, Dionne CA, Graham AC, Anderson JE, Glover WR.

Microsc Microanal. 2012 Oct;18(5):1049-53. doi: 10.1017/S1431927612012615. Epub 2012 Oct 9.

PMID:
23046798
50.

Nematode spatial and ecological patterns from tropical and temperate rainforests.

Porazinska DL, Giblin-Davis RM, Powers TO, Thomas WK.

PLoS One. 2012;7(9):e44641. doi: 10.1371/journal.pone.0044641. Epub 2012 Sep 11.

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