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Computational Neuroscience: Mathematical and Statistical Perspectives.

Kass RE, Amari SI, Arai K, Brown EN, Diekman CO, Diesmann M, Doiron B, Eden UT, Fairhall AL, Fiddyment GM, Fukai T, Grün S, Harrison MT, Helias M, Nakahara H, Teramae JN, Thomas PJ, Reimers M, Rodu J, Rotstein HG, Shea-Brown E, Shimazaki H, Shinomoto S, Yu BM, Kramer MA.

Annu Rev Stat Appl. 2018 Mar;5:183-214. doi: 10.1146/annurev-statistics-041715-033733. Epub 2017 Dec 8.


Distribution of organic and inorganic mercury across the pelts of Canadian river otter (Lontra canadensis).

Eccles KM, Littlewood ES, Thomas PJ, Chan HM.

Sci Rep. 2019 Mar 1;9(1):3237. doi: 10.1038/s41598-019-39893-w.


Human exposures to rare earth elements: Present knowledge and research prospects.

Pagano G, Thomas PJ, Di Nunzio A, Trifuoggi M.

Environ Res. 2019 Apr;171:493-500. doi: 10.1016/j.envres.2019.02.004. Epub 2019 Feb 4. Review.


Control theory in biology and medicine : Introduction to the special issue.

Thomas PJ, Olufsen M, Sepulchre R, Iglesias PA, Ijspeert A, Srinivasan M.

Biol Cybern. 2019 Apr;113(1-2):1-6. doi: 10.1007/s00422-018-00791-5.


Topsoil and urban dust pollution and toxicity in Taranto (southern Italy) industrial area and in a residential district.

Trifuoggi M, Pagano G, Oral R, Gravina M, Toscanesi M, Mozzillo M, Siciliano A, Burić P, Lyons DM, Palumbo A, Thomas PJ, D'Ambra L, Crisci A, Guida M, Tommasi F.

Environ Monit Assess. 2018 Dec 28;191(1):43. doi: 10.1007/s10661-018-7164-7.


Investigation of a Cluster of Sphingomonas koreensis Infections.

Johnson RC, Deming C, Conlan S, Zellmer CJ, Michelin AV, Lee-Lin S, Thomas PJ, Park M, Weingarten RA, Less J, Dekker JP, Frank KM, Musser KA, McQuiston JR, Henderson DK, Lau AF, Palmore TN, Segre JA.

N Engl J Med. 2018 Dec 27;379(26):2529-2539. doi: 10.1056/NEJMoa1803238.


Isogenic cell models of cystic fibrosis-causing variants in natively expressing pulmonary epithelial cells.

Valley HC, Bukis KM, Bell A, Cheng Y, Wong E, Jordan NJ, Allaire NE, Sivachenko A, Liang F, Bihler H, Thomas PJ, Mahiou J, Mense M.

J Cyst Fibros. 2018 Dec 15. pii: S1569-1993(18)30940-8. doi: 10.1016/j.jcf.2018.12.001. [Epub ahead of print]


Soil pollution and toxicity in an area affected by emissions from a bauxite processing plant and a power plant in Gardanne (southern France).

Oral R, Pagano G, Siciliano A, Toscanesi M, Gravina M, Di Nunzio A, Palumbo A, Thomas PJ, Tommasi F, Burić P, Lyons DM, Guida M, Trifuoggi M.

Ecotoxicol Environ Saf. 2019 Apr 15;170:55-61. doi: 10.1016/j.ecoenv.2018.11.122. Epub 2018 Dec 4.


Toxicokinetics and bioaccumulation of polycyclic aromatic compounds in wood frog tadpoles (Lithobates sylvaticus) exposed to Athabasca oil sands sediment.

Bilodeau JC, Gutierrez Villagomez JM, Kimpe LE, Thomas PJ, Pauli BD, Trudeau VL, Blais JM.

Aquat Toxicol. 2019 Feb;207:217-225. doi: 10.1016/j.aquatox.2018.11.006. Epub 2018 Nov 17.


Experimental Validation of a Closed-Loop Respiratory Control Model using Dynamic Clamp.

Diekman CO, Thomas PJ, Wilson CG.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:5273-5276. doi: 10.1109/EMBC.2018.8513424.


Comprehensive two-dimensional gas chromatography high-resolution mass spectrometry for the analysis of substituted and unsubstituted polycyclic aromatic compounds in environmental samples.

Idowu I, Johnson W, Francisco O, Obal T, Marvin C, Thomas PJ, Sandau CD, Stetefeld J, Tomy GT.

J Chromatogr A. 2018 Dec 7;1579:106-114. doi: 10.1016/j.chroma.2018.10.030. Epub 2018 Oct 29.


A comparison of the effects of manual hyperinflation and ventilator hyperinflation on restoring end-expiratory lung volume after endotracheal suctioning: A pilot physiologic study.

Linnane MP, Caruana LR, Tronstad O, Corley A, Spooner AJ, Barnett AG, Thomas PJ, Walsh JR.

J Crit Care. 2019 Feb;49:77-83. doi: 10.1016/j.jcrc.2018.10.015. Epub 2018 Oct 22.


Pillars or Pancakes? Self-Cleaning Surfaces without Coating.

Akhtar N, Thomas PJ, Svardal B, Almenningen S, de Jong E, Magnussen S, Onck PR, Fernø MA, Holst B.

Nano Lett. 2018 Dec 12;18(12):7509-7514. doi: 10.1021/acs.nanolett.8b02982. Epub 2018 Nov 9.


Identification of halogenated polycyclic aromatic hydrocarbons in biological samples from Alberta Oil-Sands Region.

Xia Z, Idowu I, Marvin C, Thomas PJ, Johnson W, Francisco O, Stetefeld J, Crimmins B, Fry M, Tomy GT.

Chemosphere. 2019 Jan;215:206-213. doi: 10.1016/j.chemosphere.2018.10.050. Epub 2018 Oct 8.


Using wood frog (Lithobates sylvaticus) tadpoles and semipermeable membrane devices to monitor polycyclic aromatic compounds in boreal wetlands in the oil sands region of northern Alberta, Canada.

Mundy LJ, Bilodeau JC, Schock DM, Thomas PJ, Blais JM, Pauli BD.

Chemosphere. 2019 Jan;214:148-157. doi: 10.1016/j.chemosphere.2018.09.034. Epub 2018 Sep 18.


Isotope discrimination by form IC RubisCO from Ralstonia eutropha and Rhodobacter sphaeroides, metabolically versatile members of 'Proteobacteria' from aquatic and soil habitats.

Thomas PJ, Boller AJ, Satagopan S, Tabita FR, Cavanaugh CM, Scott KM.

Environ Microbiol. 2019 Jan;21(1):72-80. doi: 10.1111/1462-2920.14423. Epub 2018 Nov 21.


Approaches to target tractability assessment - a practical perspective.

Brown KK, Hann MM, Lakdawala AS, Santos R, Thomas PJ, Todd K.

Medchemcomm. 2018 Feb 14;9(4):606-613. doi: 10.1039/c7md00633k. eCollection 2018 Apr 1. Review.


CFTR modulator theratyping: Current status, gaps and future directions.

Clancy JP, Cotton CU, Donaldson SH, Solomon GM, VanDevanter DR, Boyle MP, Gentzsch M, Nick JA, Illek B, Wallenburg JC, Sorscher EJ, Amaral MD, Beekman JM, Naren AP, Bridges RJ, Thomas PJ, Cutting G, Rowe S, Durmowicz AG, Mense M, Boeck KD, Skach W, Penland C, Joseloff E, Bihler H, Mahoney J, Borowitz D, Tuggle KL.

J Cyst Fibros. 2019 Jan;18(1):22-34. doi: 10.1016/j.jcf.2018.05.004. Epub 2018 Jun 20. Review.


Stochastic shielding and edge importance for Markov chains with timescale separation.

Schmidt DR, Galán RF, Thomas PJ.

PLoS Comput Biol. 2018 Jun 18;14(6):e1006206. doi: 10.1371/journal.pcbi.1006206. eCollection 2018 Jun.


Welcome from the new Editor(s)-in-Chief.

Lindner B, Thomas PJ, Fellous JM.

Biol Cybern. 2018 Jun;112(3):163. doi: 10.1007/s00422-018-0760-3. No abstract available.


Pathogenic Signal Sequence Mutations in Progranulin Disrupt SRP Interactions Required for mRNA Stability.

Pinarbasi ES, Karamyshev AL, Tikhonova EB, Wu IH, Hudson H, Thomas PJ.

Cell Rep. 2018 Jun 5;23(10):2844-2851. doi: 10.1016/j.celrep.2018.05.003.


Matador injury case report: Spermatic cord fat pad (SCFP) interposition to support complex pelvic reconstruction-a novel technique.

Zachou A, Mteta KA, Thomas PJ.

Urol Case Rep. 2018 Mar 31;18:87-88. doi: 10.1016/j.eucr.2018.03.016. eCollection 2018 May. No abstract available.


Active nuclear import and passive nuclear export are the primary determinants of TDP-43 localization.

Pinarbasi ES, Cağatay T, Fung HYJ, Li YC, Chook YM, Thomas PJ.

Sci Rep. 2018 May 4;8(1):7083. doi: 10.1038/s41598-018-25008-4.


Long-term culture and cloning of primary human bronchial basal cells that maintain multipotent differentiation capacity and CFTR channel function.

Peters-Hall JR, Coquelin ML, Torres MJ, LaRanger R, Alabi BR, Sho S, Calva-Moreno JF, Thomas PJ, Shay JW.

Am J Physiol Lung Cell Mol Physiol. 2018 Aug 1;315(2):L313-L327. doi: 10.1152/ajplung.00355.2017. Epub 2018 May 3.


Neonicotinoid detection in wild turkeys (Meleagris gallopavo silvestris) in Ontario, Canada.

MacDonald AM, Jardine CM, Thomas PJ, Nemeth NM.

Environ Sci Pollut Res Int. 2018 Jun;25(16):16254-16260. doi: 10.1007/s11356-018-2093-0. Epub 2018 Apr 27.


Enumeration of the constitutional isomers of environmentally relevant substituted polycyclic aromatic compounds.

Johnson W, Idowu I, Francisco O, Marvin C, Thomas PJ, Stetefeld J, Tomy GT.

Chemosphere. 2018 Jul;202:9-16. doi: 10.1016/j.chemosphere.2018.03.035. Epub 2018 Mar 6.


Heavy Rare Earth Elements Affect Sphaerechinus granularis Sea Urchin Early Life Stages by Multiple Toxicity Endpoints.

Gravina M, Pagano G, Oral R, Guida M, Toscanesi M, Siciliano A, Di Nunzio A, Burić P, Lyons DM, Thomas PJ, Trifuoggi M.

Bull Environ Contam Toxicol. 2018 May;100(5):641-646. doi: 10.1007/s00128-018-2309-5. Epub 2018 Mar 2.


Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance.

Weingarten RA, Johnson RC, Conlan S, Ramsburg AM, Dekker JP, Lau AF, Khil P, Odom RT, Deming C, Park M, Thomas PJ; NISC Comparative Sequencing Program, Henderson DK, Palmore TN, Segre JA, Frank KM.

MBio. 2018 Feb 6;9(1). pii: e02011-17. doi: 10.1128/mBio.02011-17.


Airborne polycyclic aromatic compounds contribute to the induction of the tumour-suppressing P53 pathway in wild double-crested cormorants.

Wallace SJ, de Solla SR, Thomas PJ, Harner T, Eng A, Langlois VS.

Ecotoxicol Environ Saf. 2018 Apr 15;150:176-189. doi: 10.1016/j.ecoenv.2017.12.028. Epub 2017 Dec 22.


Validation of a simultaneous method for determining polycyclic aromatic compounds and alkylated isomers in biota.

Idowu I, Francisco O, Thomas PJ, Johnson W, Marvin C, Stetefeld J, Tomy GT.

Rapid Commun Mass Spectrom. 2018 Feb 15;32(3):277-287. doi: 10.1002/rcm.8035.


17β-Estradiol Dysregulates Innate Immune Responses to Pseudomonas aeruginosa Respiratory Infection and Is Modulated by Estrogen Receptor Antagonism.

Abid S, Xie S, Bose M, Shaul PW, Terada LS, Brody SL, Thomas PJ, Katzenellenbogen JA, Kim SH, Greenberg DE, Jain R.

Infect Immun. 2017 Sep 20;85(10). pii: e00422-17. doi: 10.1128/IAI.00422-17. Print 2017 Oct.


Eupnea, tachypnea, and autoresuscitation in a closed-loop respiratory control model.

Diekman CO, Thomas PJ, Wilson CG.

J Neurophysiol. 2017 Oct 1;118(4):2194-2215. doi: 10.1152/jn.00170.2017. Epub 2017 Jul 19.


Comparative toxicity of seven rare earth elements in sea urchin early life stages.

Trifuoggi M, Pagano G, Guida M, Palumbo A, Siciliano A, Gravina M, Lyons DM, Burić P, Levak M, Thomas PJ, Giarra A, Oral R.

Environ Sci Pollut Res Int. 2017 Sep;24(25):20803-20810. doi: 10.1007/s11356-017-9658-1. Epub 2017 Jul 18.


The dynamic excitation of a granular chain: Contact mechanics finite element analysis and experimental validation.

Gélat P, Yang J, Akanji O, Thomas PJ, Hutchins D, Harput S, Freear S, Saffari N.

J Acoust Soc Am. 2017 Jun;141(6):4240. doi: 10.1121/1.4983466.


Direct Binding of the Corrector VX-809 to Human CFTR NBD1: Evidence of an Allosteric Coupling between the Binding Site and the NBD1:CL4 Interface.

Hudson RP, Dawson JE, Chong PA, Yang Z, Millen L, Thomas PJ, Brouillette CG, Forman-Kay JD.

Mol Pharmacol. 2017 Aug;92(2):124-135. doi: 10.1124/mol.117.108373. Epub 2017 May 25.


Characteristics of nanocrystalline thin films of cadmium sulphide deposited at the water-oil interface.

Albrasi E, Kelly AJ, Johal S, O'Brien P, Baxter SN, Thomas PJ.

J Colloid Interface Sci. 2017 Jun 15;496:474-478. doi: 10.1016/j.jcis.2017.02.044. Epub 2017 Feb 22.


Predictive meta-regressions relating mercury tissue concentrations of freshwater piscivorous mammals.

Eccles KM, Thomas PJ, Chan HM.

Environ Toxicol Chem. 2017 Sep;36(9):2377-2384. doi: 10.1002/etc.3775. Epub 2017 Mar 23.


Heavy rare earth elements affect early life stages in Paracentrotus lividus and Arbacia lixula sea urchins.

Oral R, Pagano G, Siciliano A, Gravina M, Palumbo A, Castellano I, Migliaccio O, Thomas PJ, Guida M, Tommasi F, Trifuoggi M.

Environ Res. 2017 Apr;154:240-246. doi: 10.1016/j.envres.2017.01.011. Epub 2017 Jan 17.


Robustness, flexibility, and sensitivity in a multifunctional motor control model.

Lyttle DN, Gill JP, Shaw KM, Thomas PJ, Chiel HJ.

Biol Cybern. 2017 Feb;111(1):25-47. doi: 10.1007/s00422-016-0704-8. Epub 2016 Dec 21.


The Effect of Boundary Conditions on Resonant Ultrasonic Spherical Chains.

Akanji O, Yang J, Hutchins D, Thomas PJ, Davis LA, Harput S, Freear S, Gelat PN, Saffari N.

IEEE Trans Ultrason Ferroelectr Freq Control. 2016 Nov;63(11):1957-1966.


Colorectal cancer screening patient education materials-how effective is online health information?

John ES, John AM, Hansberry DR, Thomas PJ, Agarwal P, Deitch C, Chokhavatia S.

Int J Colorectal Dis. 2016 Dec;31(12):1817-1824. Epub 2016 Sep 20.


Assembly of Submicron Sized Ag, Co, and Ni Particles Into Thin Films at Liquid/Liquid Interfaces.

Al Chaghouri H, Malik MA, Thomas PJ, O'Brien P.

J Nanosci Nanotechnol. 2016 May;16(5):5420-5.


Characterization of novel small-molecule NRF2 activators: Structural and biochemical validation of stereospecific KEAP1 binding.

Huerta C, Jiang X, Trevino I, Bender CF, Ferguson DA, Probst B, Swinger KK, Stoll VS, Thomas PJ, Dulubova I, Visnick M, Wigley WC.

Biochim Biophys Acta. 2016 Nov;1860(11 Pt A):2537-2552. doi: 10.1016/j.bbagen.2016.07.026. Epub 2016 Jul 27.


Analysis of solitary wave impulses in granular chains using ultrasonic excitation.

Yang J, Hutchins DA, Akanji O, Thomas PJ, Davis LA, Harput S, Gelat P, Freear S, Saffari N.

Phys Rev E. 2016 Jun;93(6):063002. doi: 10.1103/PhysRevE.93.063002. Epub 2016 Jun 10.


Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization.

Conlan S, Park M, Deming C, Thomas PJ, Young AC, Coleman H, Sison C; NISC Comparative Sequencing Program, Weingarten RA, Lau AF, Dekker JP, Palmore TN, Frank KM, Segre JA.

MBio. 2016 Jun 28;7(3). pii: e00742-16. doi: 10.1128/mBio.00742-16.


N-Alpha-Acetyltransferases and Regulation of CFTR Expression.

Vetter AJ, Karamyshev AL, Patrick AE, Hudson H, Thomas PJ.

PLoS One. 2016 May 16;11(5):e0155430. doi: 10.1371/journal.pone.0155430. eCollection 2016.


Stochastic Network Models in Neuroscience: A Festschrift for Jack Cowan. Introduction to the Special Issue.

Bressloff PC, Ermentrout B, Faugeras O, Thomas PJ.

J Math Neurosci. 2016 Dec;6(1):4. doi: 10.1186/s13408-016-0036-y. Epub 2016 Apr 4.


Comparative toxicities of selected rare earth elements: Sea urchin embryogenesis and fertilization damage with redox and cytogenetic effects.

Pagano G, Guida M, Siciliano A, Oral R, Koçbaş F, Palumbo A, Castellano I, Migliaccio O, Thomas PJ, Trifuoggi M.

Environ Res. 2016 May;147:453-60. doi: 10.1016/j.envres.2016.02.031. Epub 2016 Mar 10.


Ultrasonic propagation in finite-length granular chains.

Hutchins DA, Yang J, Akanji O, Thomas PJ, Davis LA, Freear S, Harput S, Saffari N, Gelat P.

Ultrasonics. 2016 Jul;69:215-23. doi: 10.1016/j.ultras.2015.10.018. Epub 2015 Nov 2.

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