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Items: 1 to 50 of 366

1.

CFTR modulator theratyping: Current status, gaps and future directions.

Clancy JP, Cotton CU, Donaldson SH, Solomon GM, VanDevanter DR, Boyle MP, Gentzsch M, Nick JA, Illek B, Wallenburg JC, Sorscher EJ, Amaral MD, Beekman JM, Naren AP, Bridges RJ, Thomas PJ, Cutting G, Rowe S, Durmowicz AG, Mense M, Boeck KD, Skach W, Penland C, Joseloff E, Bihler H, Mahoney J, Borowitz D, Tuggle KL.

J Cyst Fibros. 2018 Jun 19. pii: S1569-1993(18)30585-X. doi: 10.1016/j.jcf.2018.05.004. [Epub ahead of print] Review.

PMID:
29934203
2.

Stochastic shielding and edge importance for Markov chains with timescale separation.

Schmidt DR, Galán RF, Thomas PJ.

PLoS Comput Biol. 2018 Jun 18;14(6):e1006206. doi: 10.1371/journal.pcbi.1006206. [Epub ahead of print]

3.

Welcome from the new Editor(s)-in-Chief.

Lindner B, Thomas PJ, Fellous JM.

Biol Cybern. 2018 Jun 7. doi: 10.1007/s00422-018-0760-3. [Epub ahead of print] No abstract available.

PMID:
29882190
4.

Pathogenic Signal Sequence Mutations in Progranulin Disrupt SRP Interactions Required for mRNA Stability.

Pinarbasi ES, Karamyshev AL, Tikhonova EB, Wu IH, Hudson H, Thomas PJ.

Cell Rep. 2018 Jun 5;23(10):2844-2851. doi: 10.1016/j.celrep.2018.05.003.

5.

Matador injury case report: Spermatic cord fat pad (SCFP) interposition to support complex pelvic reconstruction-a novel technique.

Zachou A, Mteta KA, Thomas PJ.

Urol Case Rep. 2018 Mar 31;18:87-88. doi: 10.1016/j.eucr.2018.03.016. eCollection 2018 May. No abstract available.

6.

Active nuclear import and passive nuclear export are the primary determinants of TDP-43 localization.

Pinarbasi ES, Cağatay T, Fung HYJ, Li YC, Chook YM, Thomas PJ.

Sci Rep. 2018 May 4;8(1):7083. doi: 10.1038/s41598-018-25008-4.

7.

Long-term Culture and Cloning of Primary Human Bronchial Basal Cells that Maintain Multipotent Differentiation Capacity and CFTR Channel Function.

Peters-Hall JR, Coquelin ML, Torres MJ, LaRanger R, Alabi BR, Sho S, Calva-Moreno JF, Thomas PJ, Shay JW.

Am J Physiol Lung Cell Mol Physiol. 2018 May 3. doi: 10.1152/ajplung.00355.2017. [Epub ahead of print]

PMID:
29722564
8.

Neonicotinoid detection in wild turkeys (Meleagris gallopavo silvestris) in Ontario, Canada.

MacDonald AM, Jardine CM, Thomas PJ, Nemeth NM.

Environ Sci Pollut Res Int. 2018 Jun;25(16):16254-16260. doi: 10.1007/s11356-018-2093-0. Epub 2018 Apr 27.

PMID:
29704179
9.

Enumeration of the constitutional isomers of environmentally relevant substituted polycyclic aromatic compounds.

Johnson W, Idowu I, Francisco O, Marvin C, Thomas PJ, Stetefeld J, Tomy GT.

Chemosphere. 2018 Jul;202:9-16. doi: 10.1016/j.chemosphere.2018.03.035. Epub 2018 Mar 6.

PMID:
29567615
10.

Heavy Rare Earth Elements Affect Sphaerechinus granularis Sea Urchin Early Life Stages by Multiple Toxicity Endpoints.

Gravina M, Pagano G, Oral R, Guida M, Toscanesi M, Siciliano A, Di Nunzio A, Burić P, Lyons DM, Thomas PJ, Trifuoggi M.

Bull Environ Contam Toxicol. 2018 May;100(5):641-646. doi: 10.1007/s00128-018-2309-5. Epub 2018 Mar 2.

PMID:
29500496
11.

Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance.

Weingarten RA, Johnson RC, Conlan S, Ramsburg AM, Dekker JP, Lau AF, Khil P, Odom RT, Deming C, Park M, Thomas PJ; NISC Comparative Sequencing Program, Henderson DK, Palmore TN, Segre JA, Frank KM.

MBio. 2018 Feb 6;9(1). pii: e02011-17. doi: 10.1128/mBio.02011-17.

12.

Airborne polycyclic aromatic compounds contribute to the induction of the tumour-suppressing P53 pathway in wild double-crested cormorants.

Wallace SJ, de Solla SR, Thomas PJ, Harner T, Eng A, Langlois VS.

Ecotoxicol Environ Saf. 2018 Apr 15;150:176-189. doi: 10.1016/j.ecoenv.2017.12.028. Epub 2017 Dec 22.

13.

Validation of a simultaneous method for determining polycyclic aromatic compounds and alkylated isomers in biota.

Idowu I, Francisco O, Thomas PJ, Johnson W, Marvin C, Stetefeld J, Tomy GT.

Rapid Commun Mass Spectrom. 2018 Feb 15;32(3):277-287. doi: 10.1002/rcm.8035.

PMID:
29178235
14.

17β-Estradiol Dysregulates Innate Immune Responses to Pseudomonas aeruginosa Respiratory Infection and Is Modulated by Estrogen Receptor Antagonism.

Abid S, Xie S, Bose M, Shaul PW, Terada LS, Brody SL, Thomas PJ, Katzenellenbogen JA, Kim SH, Greenberg DE, Jain R.

Infect Immun. 2017 Sep 20;85(10). pii: e00422-17. doi: 10.1128/IAI.00422-17. Print 2017 Oct.

15.

Eupnea, tachypnea, and autoresuscitation in a closed-loop respiratory control model.

Diekman CO, Thomas PJ, Wilson CG.

J Neurophysiol. 2017 Oct 1;118(4):2194-2215. doi: 10.1152/jn.00170.2017. Epub 2017 Jul 19.

PMID:
28724778
16.

Comparative toxicity of seven rare earth elements in sea urchin early life stages.

Trifuoggi M, Pagano G, Guida M, Palumbo A, Siciliano A, Gravina M, Lyons DM, Burić P, Levak M, Thomas PJ, Giarra A, Oral R.

Environ Sci Pollut Res Int. 2017 Sep;24(25):20803-20810. doi: 10.1007/s11356-017-9658-1. Epub 2017 Jul 18.

PMID:
28721613
17.

The dynamic excitation of a granular chain: Contact mechanics finite element analysis and experimental validation.

Gélat P, Yang J, Akanji O, Thomas PJ, Hutchins D, Harput S, Freear S, Saffari N.

J Acoust Soc Am. 2017 Jun;141(6):4240. doi: 10.1121/1.4983466.

PMID:
28618797
18.

Direct Binding of the Corrector VX-809 to Human CFTR NBD1: Evidence of an Allosteric Coupling between the Binding Site and the NBD1:CL4 Interface.

Hudson RP, Dawson JE, Chong PA, Yang Z, Millen L, Thomas PJ, Brouillette CG, Forman-Kay JD.

Mol Pharmacol. 2017 Aug;92(2):124-135. doi: 10.1124/mol.117.108373. Epub 2017 May 25.

PMID:
28546419
19.

Characteristics of nanocrystalline thin films of cadmium sulphide deposited at the water-oil interface.

Albrasi E, Kelly AJ, Johal S, O'Brien P, Baxter SN, Thomas PJ.

J Colloid Interface Sci. 2017 Jun 15;496:474-478. doi: 10.1016/j.jcis.2017.02.044. Epub 2017 Feb 22.

PMID:
28257966
20.

Predictive meta-regressions relating mercury tissue concentrations of freshwater piscivorous mammals.

Eccles KM, Thomas PJ, Chan HM.

Environ Toxicol Chem. 2017 Sep;36(9):2377-2384. doi: 10.1002/etc.3775. Epub 2017 Mar 23.

PMID:
28224658
21.

Heavy rare earth elements affect early life stages in Paracentrotus lividus and Arbacia lixula sea urchins.

Oral R, Pagano G, Siciliano A, Gravina M, Palumbo A, Castellano I, Migliaccio O, Thomas PJ, Guida M, Tommasi F, Trifuoggi M.

Environ Res. 2017 Apr;154:240-246. doi: 10.1016/j.envres.2017.01.011. Epub 2017 Jan 17.

PMID:
28107742
22.

Robustness, flexibility, and sensitivity in a multifunctional motor control model.

Lyttle DN, Gill JP, Shaw KM, Thomas PJ, Chiel HJ.

Biol Cybern. 2017 Feb;111(1):25-47. doi: 10.1007/s00422-016-0704-8. Epub 2016 Dec 21.

23.

The Effect of Boundary Conditions on Resonant Ultrasonic Spherical Chains.

Akanji O, Yang J, Hutchins D, Thomas PJ, Davis LA, Harput S, Freear S, Gelat PN, Saffari N.

IEEE Trans Ultrason Ferroelectr Freq Control. 2016 Nov;63(11):1957-1966.

24.

Colorectal cancer screening patient education materials-how effective is online health information?

John ES, John AM, Hansberry DR, Thomas PJ, Agarwal P, Deitch C, Chokhavatia S.

Int J Colorectal Dis. 2016 Dec;31(12):1817-1824. Epub 2016 Sep 20.

PMID:
27649702
25.

B4GALNT2 (GALGT2) Gene Therapy Reduces Skeletal Muscle Pathology in the FKRP P448L Mouse Model of Limb Girdle Muscular Dystrophy 2I.

Thomas PJ, Xu R, Martin PT.

Am J Pathol. 2016 Sep;186(9):2429-48. doi: 10.1016/j.ajpath.2016.05.021.

26.

Assembly of Submicron Sized Ag, Co, and Ni Particles Into Thin Films at Liquid/Liquid Interfaces.

Al Chaghouri H, Malik MA, Thomas PJ, O'Brien P.

J Nanosci Nanotechnol. 2016 May;16(5):5420-5.

PMID:
27483942
27.

Characterization of novel small-molecule NRF2 activators: Structural and biochemical validation of stereospecific KEAP1 binding.

Huerta C, Jiang X, Trevino I, Bender CF, Ferguson DA, Probst B, Swinger KK, Stoll VS, Thomas PJ, Dulubova I, Visnick M, Wigley WC.

Biochim Biophys Acta. 2016 Nov;1860(11 Pt A):2537-2552. doi: 10.1016/j.bbagen.2016.07.026. Epub 2016 Jul 27.

PMID:
27474998
28.

Analysis of solitary wave impulses in granular chains using ultrasonic excitation.

Yang J, Hutchins DA, Akanji O, Thomas PJ, Davis LA, Harput S, Gelat P, Freear S, Saffari N.

Phys Rev E. 2016 Jun;93(6):063002. doi: 10.1103/PhysRevE.93.063002. Epub 2016 Jun 10.

PMID:
27415349
29.

Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization.

Conlan S, Park M, Deming C, Thomas PJ, Young AC, Coleman H, Sison C; NISC Comparative Sequencing Program, Weingarten RA, Lau AF, Dekker JP, Palmore TN, Frank KM, Segre JA.

MBio. 2016 Jun 28;7(3). pii: e00742-16. doi: 10.1128/mBio.00742-16.

30.

N-Alpha-Acetyltransferases and Regulation of CFTR Expression.

Vetter AJ, Karamyshev AL, Patrick AE, Hudson H, Thomas PJ.

PLoS One. 2016 May 16;11(5):e0155430. doi: 10.1371/journal.pone.0155430. eCollection 2016.

31.

Stochastic Network Models in Neuroscience: A Festschrift for Jack Cowan. Introduction to the Special Issue.

Bressloff PC, Ermentrout B, Faugeras O, Thomas PJ.

J Math Neurosci. 2016 Dec;6(1):4. doi: 10.1186/s13408-016-0036-y. Epub 2016 Apr 4.

32.

Comparative toxicities of selected rare earth elements: Sea urchin embryogenesis and fertilization damage with redox and cytogenetic effects.

Pagano G, Guida M, Siciliano A, Oral R, Koçbaş F, Palumbo A, Castellano I, Migliaccio O, Thomas PJ, Trifuoggi M.

Environ Res. 2016 May;147:453-60. doi: 10.1016/j.envres.2016.02.031. Epub 2016 Mar 10.

PMID:
26970899
33.

Ultrasonic propagation in finite-length granular chains.

Hutchins DA, Yang J, Akanji O, Thomas PJ, Davis LA, Freear S, Harput S, Saffari N, Gelat P.

Ultrasonics. 2016 Jul;69:215-23. doi: 10.1016/j.ultras.2015.10.018. Epub 2015 Nov 2.

34.

Analysis of online patient education materials in pediatric ophthalmology.

John AM, John ES, Hansberry DR, Thomas PJ, Guo S.

J AAPOS. 2015 Oct;19(5):430-4. doi: 10.1016/j.jaapos.2015.07.286.

PMID:
26486024
35.

Thomas and Lindner Reply.

Thomas PJ, Lindner B.

Phys Rev Lett. 2015 Aug 7;115(6):069402. Epub 2015 Aug 4. No abstract available.

PMID:
26296134
36.

Commentary on Structured chaos shapes spike-response noise entropy in balanced neural networks, by Lajoie, Thivierge, and Shea-Brown.

Thomas PJ.

Front Comput Neurosci. 2015 Mar 10;9:23. doi: 10.3389/fncom.2015.00023. eCollection 2015. No abstract available.

37.
38.

Surface properties of nanocrystalline PbS films deposited at the water-oil interface: a study of atmospheric aging.

Cant DJ, Syres KL, Lunt PJ, Radtke H, Treacy J, Thomas PJ, Lewis EA, Haigh SJ, O'Brien P, Schulte K, Bondino F, Magnano E, Flavell WR.

Langmuir. 2015 Feb 3;31(4):1445-53. doi: 10.1021/la504779h. Epub 2015 Jan 20.

PMID:
25557338
39.

Asymptotic phase for stochastic oscillators.

Thomas PJ, Lindner B.

Phys Rev Lett. 2014 Dec 19;113(25):254101. Epub 2014 Dec 15.

PMID:
25554883
40.

Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics.

Anderson DF, Ermentrout B, Thomas PJ.

J Comput Neurosci. 2015 Feb;38(1):67-82. doi: 10.1007/s10827-014-0528-2. Epub 2014 Nov 19.

PMID:
25408289
41.

Isotopic discrimination and kinetic parameters of RubisCO from the marine bloom-forming diatom, Skeletonema costatum.

Boller AJ, Thomas PJ, Cavanaugh CM, Scott KM.

Geobiology. 2015 Jan;13(1):33-43. doi: 10.1111/gbi.12112. Epub 2014 Oct 10.

PMID:
25302659
42.

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae.

Conlan S, Thomas PJ, Deming C, Park M, Lau AF, Dekker JP, Snitkin ES, Clark TA, Luong K, Song Y, Tsai YC, Boitano M, Dayal J, Brooks SY, Schmidt B, Young AC, Thomas JW, Bouffard GG, Blakesley RW; NISC Comparative Sequencing Program, Mullikin JC, Korlach J, Henderson DK, Frank KM, Palmore TN, Segre JA.

Sci Transl Med. 2014 Sep 17;6(254):254ra126. doi: 10.1126/scitranslmed.3009845.

43.

The significance of dynamical architecture for adaptive responses to mechanical loads during rhythmic behavior.

Shaw KM, Lyttle DN, Gill JP, Cullins MJ, McManus JM, Lu H, Thomas PJ, Chiel HJ.

J Comput Neurosci. 2015 Feb;38(1):25-51. doi: 10.1007/s10827-014-0519-3. Epub 2014 Sep 4.

44.
45.

The BiP molecular chaperone plays multiple roles during the biogenesis of torsinA, an AAA+ ATPase associated with the neurological disease early-onset torsion dystonia.

Zacchi LF, Wu HC, Bell SL, Millen L, Paton AW, Paton JC, Thomas PJ, Zolkiewski M, Brodsky JL.

J Biol Chem. 2014 May 2;289(18):12727-47. doi: 10.1074/jbc.M113.529123. Epub 2014 Mar 13.

46.

Inefficient SRP interaction with a nascent chain triggers a mRNA quality control pathway.

Karamyshev AL, Patrick AE, Karamysheva ZN, Griesemer DS, Hudson H, Tjon-Kon-Sang S, Nilsson I, Otto H, Liu Q, Rospert S, von Heijne G, Johnson AE, Thomas PJ.

Cell. 2014 Jan 16;156(1-2):146-57. doi: 10.1016/j.cell.2013.12.017.

47.

Herbicide impact on non-target plant reproduction: what are the toxicological and ecological implications?

Boutin C, Strandberg B, Carpenter D, Mathiassen SK, Thomas PJ.

Environ Pollut. 2014 Feb;185:295-306. doi: 10.1016/j.envpol.2013.10.009. Epub 2013 Dec 5.

48.

Intensive care unit mobility practices in Australia and New Zealand: a point prevalence study.

Berney SC, Harrold M, Webb SA, Seppelt I, Patman S, Thomas PJ, Denehy L.

Crit Care Resusc. 2013 Dec;15(4):260-5.

PMID:
24289506
49.

Regulatory R region of the CFTR chloride channel is a dynamic integrator of phospho-dependent intra- and intermolecular interactions.

Bozoky Z, Krzeminski M, Muhandiram R, Birtley JR, Al-Zahrani A, Thomas PJ, Frizzell RA, Ford RC, Forman-Kay JD.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):E4427-36. doi: 10.1073/pnas.1315104110. Epub 2013 Nov 4.

50.

Rare earth elements (REEs): effects on germination and growth of selected crop and native plant species.

Thomas PJ, Carpenter D, Boutin C, Allison JE.

Chemosphere. 2014 Feb;96:57-66. doi: 10.1016/j.chemosphere.2013.07.020. Epub 2013 Aug 23.

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